Professional Documents
Culture Documents
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Key concepts
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Detect a virus, and the antibodies
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Polymerase chain reaction
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Antibody (Ig)
An antibody (Ab), also
known as
an immunoglobulin (Ig)
Immunoglobulin M
(IgM): Found mainly in
blood and lymph fluid, this
is the first antibody the
body makes when it fights
a new infection.
Immunoglobulin G
(IgG): This is the most
common antibody. It's
in blood and other body
fluids, and protects
against bacterial and
viral infections. IgG can
take time to form after
an infection.
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Structure of the antibody
(Fab)
(Fc)
Covid antigen
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Aptamer
https://doi.org/10.1016/j.omtn.2018.08.023
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Antibody vs Aptamer
https://www.basepairbio.com/aptamers-vs-antibodies/
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ELISA (Enzyme-linked Immunosorbent Assay)
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Direct ELISA
Ref: https://www.youtube.com/watch?v=ohIDilaG16I&t=1s
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Indirect ELISA
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Elements of a biosensor
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Being small and wearable is the trend
system miniaturization
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Being small and wearable is the trend
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Biosensors
International Union of Pure and Applied Chemistry (IUPAC) definition:
“A self-contained integrated device which is capable of providing specific quantitative
or semi-quantitative analytical information using a biological recognition element
which is in direct spatial contact with a transducer element.”
• http://www.who.int/news-room/fact-sheets/detail/dengue-and-severe-dengue
• Dengue: a continuing global threat, Nature Reviews microbiology, S7, 2010
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Example: Diagnosis of dengue infection
RT-PCR CRISPR
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Components of a Biosensor
provides selective molecular recognition
Enzyme
Antibody
Microorganis
m
Cell
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Another common classification of biosensors
• Catalytic biosensors:
– Measure steady-state concentration of a transducer-detectable species formed/lost
due to a biocatalytic reaction
– Monitored quantities: (i) rate of product formation, (ii) disappearance of a reactant,
(iii) inhibition of a reaction
– Biocatalysts used: (i) enzymes (ii) microorganisms, (iii) organelles
– E.g. blood glucose biosensor
• Affinity biosensors:
– Devices in which receptor molecules bind
analyte molecules “irreversibly”, causing a
physicochemical change that is detected by
a transducer
– Receptor molecules: i) antibodies ii) nucleic
acids iii) hormone receptors
– E.g. Immunoassay, DNA microarray
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Catalytic biosensors:
e.g. Electrochemical biosensors
Analyte Product
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Affinity biosensors :
Immobilization of biorecognition element
• Biological recognition element (ligand) can be immobilized directly to the sensor
surface, or indirectly via an immobilized capturing molecule.
analyte
analyte
biorecognition
element
biorecognition
element capturing
molecule
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Streptavidin-biotin binding -
A “molecular glue” widely used in biotechnology
Microfluidic flow
“biotinylated” ligand analytes
(contains analytes)
Streptavidin (a protein)
Biotin (vitamin H)
Frequency
change
Equilibrium
dissociation
Time Time Time
Analytes
luminescence/
Fluorescence
Enzymes,
antibodies
Transmitted light
• Based on the measurement of luminescence, light absorbance, reflectance, or
fluorescence emissions that occur in the ultraviolet (UV), visible, or near-infrared
(NIR) → both in solution assays and in test strips.
• Changes in light intensity correlate with the dynamics (binding) and quantity of the
analytes in the biosensor.
• Light signal may come from:
• Directly the light-analyte interaction → “Label-free” techniques
• the optical labels and probes which are specifically tagged to the analytes for
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identification → “labeled” technique
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Optical biosensor
• Key components: Analytes
• Light sources: LEDs, lasers, Arc lamps….
• Light delivery: free space or optical fibers
(or in general optical waveguides)
• Light detection: photodiodes, image
sensors (CCDs/CMOSs) , PMTs, eyes. Optical transducer
Light delivery
media (light intensity signals:
(free space or fibers) fluorescence, reflectance,
absorbance…)
Surface Plasmon
Resonance (SPR) biosensor Fiber optic biosensor (fluorescent,
(reflectance signal) reflected, transmitted light signal) DNA microarray
(fluorescent light signal)
• Optical Biosensors for the Detection of Pathogenic Microorganisms, Trend in Biotech., 34, 1, P7-25, 2016
• Sensitive optical biosensors for unlabeled targets: A review, analytica chimica acta 620 (2008) 8–26 32
MEDE 4500 • Optical biosensors in drug discovery, Nature Reviews Drug Discovery volume 1, pages 515–528 (2002)
Example:
Surface Plasmon Resonance (SPR) biosensor
formerly
https://www.cytivalifesciences.com/en/us/shop/protein-analysis/spr-
label-free-analysis/systems/biacore-t200-p-05644
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Surface Plasmon Resonance (SPR)
•Plasmons:
–collective oscillations of the “free electron gas”
density, often at optical frequencies.
•Surface Plasmons:
–plasmons confined to surface (interface)
–propagating electron density waves occurring at
the interface between metal and dielectric.
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SPR Principle
https://www.youtube.com/watch?v=sM-VI3alvAI
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Surface Plasmon Resonance (SPR)
Sample Surface Plasmon
medium Wave
Glass
•When the wave vector (kx) closely matches that of the surface plasmon (ksp) at the
metal-sample interface, reflected light is significantly attenuated.
•Within such angle range, significant energy is transferred from the light to the
surface plasmon → resonance effect.
•The resonance angle depends on the local refractive index (n2)
•n2 depends on the local mass density of the sample medium surface.
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SPR Biosensor
Working priniciples:
Resonance angle changes upon
ligand-analyte interaction
→local mass density change
→refractive index change
→ resonance angle change
→ Reflected intensity change
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SPR Biosensor
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• In real applications, we often look at populations of proteins, peptides and
nucleic acids
→ Monitor interactions between protein-protein, protein-peptide and
protein-nucleic acid
→ Multiple measurements are required!
→ So, how should we speed up the entire measurement if we have, e.g. 400
different conditions to look into?
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Biacore sensor chip
A full interaction profile from every spot
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Key metrics of a biosensor
1. LINEARITY
Linearity of the sensor should be high for the detection of high
analytes concentration.
Measurement
accuracy 2. SENSITIVITY
Ability of detecting minute quantity (concentration) of the
analytes.
A trade-off very 3. SPECIFICITY
common to many Detected signal should solely come from the analytes (or the
biosensors corresponding reactions/bindings). Chemical interference must
be minimized for obtaining the correct result.
Examples:
• SPR sensor •ELISA
→Analysis time: 10s → Analysis time: 60 min
→Limit of detection: 3nM →Limit of detection: 0.1 pM
J.L. Arlett, et. al. NATURE NANOTECHNOLOGY ,6, pp. 203, 2011 41
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Sensitivity versus time (cost) –
A lesson learnt from COVID-19
• Clinical tests are designed for use with symptomatic people, do not need to be low-cost, and require high
analytic sensitivity to return a definitive clinical diagnosis given a single opportunity to test.
• Transmission of SARS-CoV-2 appears to occur days after exposure, when the viral load peaks
➔ This timing increases the importance of high test-frequency and LOW cost.
➔ test must be used at the beginning of an infection to stop onward spread,
➔ reduces the importance of (very) high sensitivity detection
• Tests used in effective surveillance regimens (e.g. intended to reduce the population prevalence of a
respiratory virus during this COVID-19), need to return results quickly to limit asymptomatic spread
➔ sufficiently inexpensive and easy to execute to allow frequent testing (multiple times per week)
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The importance of early detection
https://www.mdpi.com/2072-666X/11/3/306/htm
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Immunoassay
• An analytical method using antibodies as reagents to quantitate specific analytes.
• The analytes being measured may be
• those are naturally present in the body (such as a thyroid hormone),
• those that the body produces but are not typically present (e.g. cancer antigen)
• those that do not naturally occur in the body (such as an abused drug).
• Highly specific “lock and key” system: antibody – antigen reaction
• Highly sensitive: can detect proteins at picomolar to nanomolar (10-12 -10-9 moles/liter).
• Simple, precise, and inexpensive(?)
Clinical applications:
• Detecting potential food allergens
• milk, peanuts, walnuts, almonds and eggs
• Disease outbreaks- tracking the spread of disease
• e.g. Zika, Ebola, HIV, bird flu, SARS, colds, STD etc
• Detections of antigens
• e.g. pregnancy hormones, drug allergen, genetically modified organism (GMO),
mad cow disease
• Detection of antibodies in blood sample for past exposure to disease
• e.g. Lyme Disease, trichinosis, HIV, bird flu
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Some key (layman) definitions
• An antibody is a protein that is produced by the body in
response to an “invading” (foreign) substance. Antibodies are
produced as part of the body’s immune response to protect
itself, e.g. some immunoassays test for the presence of
antibodies to cancer molecules, i.e if the antibodies are
present→ invading cancer cells are, too.
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Common Testing Methods
• Two Primary Immunoassay Methods
– Immunochromatography - Lateral Flow Device
• Qualitative → Yes/No Results
• few minutes
• Simple procedure for on-site testing anywhere
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Immunoassay - Key components
• Specific Antibodies
– Example: differentiate between GMO proteins
• Pure Antigen (target compound/protein)
– Typical analytes in assay measurement
• Enzyme conjugate
– An identifying marker attached to the antibody, used to signal the antigen’s presence.
Enzymes provide detectable signal via their activity; reaction with a specific substrate
chemical yields a colored, light-emitting, or fluorescent product.
• Immobilization substrate
– A physical structure to adhere antibodies
substrate chemical
One example: enzyme
Antigen
Antibody
Immobilization substrate
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Generic ELISA protocol
1. Coat solid phase with either antibody or analyte.
2. Block remaining binding sites on the solid phase.
3. Add either analyte or “anti-analyte” antibody to be detected.
4. Wash out excess reagent. This separates bound from free analyte.
5. If reagent in step 4 is an analyte, add a second anti-analyte antibody with
detection molecule attached.
6. Wash out excess reagent.
7. Add substrate chemical. The color change or amount of light emitted is
proportional to the level of target analyte.
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Common types of ELISA:
Immobilization (capture) methods
• Direct - immobilization of the antigen of interest can be done by direct
adsorption to the assay plate
• Indirect - immobilization of the antigen of interest can be done indirectly via
a capture antibody that has been attached to the plate.
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Common types of ELISA: Detection methods
• Direct detection:
– It can be performed with antigen that is directly immobilized on the assay
plate or with the capture assay format.
– Direct detection is not widely used in ELISA but is quite common for
immunohistochemical staining of tissues and cells.
Direct capture Indirect capture
Direct detection Direct detection
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Chromogen and fluorochrome labels
• Labels are conjugated (joined) to antibodies in order to visualize the binding of the
antibody. Detection methods include:
• Fluorescence: Fluorescent labels emit light in the visual range when excited by light of a
specific wavelength.
• Colored precipitate: when combined with the appropriate substrate the enzymatic
labels HRP and AP form a colored precipitate.
• ELISA signals could be interpreted by eye or analyzed by spectrophotometer
(spectrophotometry).
Fluorochrome Excitation Emission
(nm) (nm)
Aminomethylcoumarin 353 440
Horseradish peroxidase Alkaline phosphatase (AMCA)
(HRP) (AP) Fluorescein (FITC) 495 528
AEC (red) Fast red (pink) Fluorescein (DTAF) 495 528
Rhodamine (TRITC) 550 570
DAB (brown) INT (yellow / brown)
Texas Redtm 596 620
NBT (brown / purple) Cy2tm 489 505
New Fuchsin (red) Cy3tm 552 565
Cy3.5tm 581 596
TNBT (purple)
Cy5tm 650 667
Vega red (pink) Cy5.5tm 678 703
Cy7tm 743 767
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Common types of ELISA: Detection methods
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ELISA read-out
Absorbance
• The color changes/fluorescence emission, and thus the associated binding activities,
are analyzed by spectrophotometry
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Lateral flow (immuno)assays (LFA)
• Mostly used for qualitative, semiquantitative and to some extent
quantitative monitoring in resource-poor or non-laboratory
environments.
• Applications include tests on pathogens, drugs, hormones and metabolites
in biomedical, veterinary, feed/food and environmental settings, e.g.
Detecting the hormone, human chorionic gonadotropin (hCG), which is the
biomarker for pregnancy and is found in urine and blood
• Key advantages:
• High sensitivity, specificity, good stability
• Relatively low cost and short timeline for development and approval
• Minimal education required for users and regulators
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Flow
General configuration
• Key feature of LFA is the movement of a liquid sample containing the analyte of
interest, along a membrane strip of polymeric material (e.g. nitrocellulose, nylon,
polyethersulfone, polyethylene or fused silica) thereby passing various zones where
molecules (mostly antibodies) have been attached that will have specific
interactions with the analyte.
• Typical LFA format consists of a surface layer to carry the sample from the sample
pad via the conjugate release pad along the strip crossing the detection zone (at
least has two “Read-out” lines: test line and control line) up to the absorbent pad.
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Lateral flow (immuno)assay (LFA)
• The particles are typically colloidal gold, or a colored,
fluorescent, or monodisperse latex microbead.
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LFA: Negative result
• Analytes (e.g. Antigen) not present in sample, conjugated particles pass
test/target line without being captured, but are caught by control line.
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LFA: Positive result
• Conjugated particles is remobilized and subsequently bind to antibodies at test line.
• Note that the conjugated particles will bind to control line whether or not the antigen is
present.
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Covid-19 LFA
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Diabetes No Longer A Rich-Country Problem
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Facts about diabetes
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The most successful biosensors…
• Glucose biosensors still account for >80% of the current world market for biosensors
– Global glucose monitoring device and diabetes management market was valued at USD
8.35 billion for 2017.
• Cornerstone of diabetes management in the past few decades.
– In 2017, the International Diabetes Federation (IDF) estimated that more than 425 million
people have been diagnosed with the disease.
– > 60% of adults with diabetes checked their blood glucose at least once a day.
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Insulin
• It helps the blood glucose regulation which is of paramount importance of
global human metabolism ➔ High blood glucose levels→ diabetes mellitus.
• Type 2 diabetes
– The pancreas does not produce enough insulin
or the body cells do not use insulin properly.
– 90% of people with diabetes have Type 2.
• Gestational diabetes
– Pregnant women, who have never had diabetes
before, have a high blood glucose level during
pregnancy.
– It may precede development of type 2 DM.
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Target Blood Glucose Ranges
• A fasting plasma glucose level : 70–130 mg/dL
(3.9-7.2 mmol/L)
• After meals: less than 180 mg/dL (10 mmol/L).
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Glucose biosensor types
• In general, most of them are based on enzymatic sensing
approach, i.e. use enzymes to act as catalysts for chemical
reactions involving glucose.
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Key components
• Blood lancet (or lancet), is a small scalpel but
with a double-edged blade or needle, that
are used to make punctures to obtain small
blood specimens, are generally disposable
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Basic mechanism
•Advance in direct measurement of blood glucose came in the late 1980’s,
when the enzyme glucose oxidase (GOx) became more widely available.
GOx
Glucose + O2 Gluconic acid + H2O2
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Basic mechanism
Electrochemical detection of H2O2:
working reference
electrode electrode The roles of the anode:
A
(i) supplying electrons
(Pt) (Ag/AgCl) (conducting the circuit)
(ii) referencing potential
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First-generation Glucose biosensors
Glucose + GOx GOx-H2 + Gluconic acid
GOx-H2 + O2 GOx + H2O2
Electrode
Glucose Gox H2O2
(substrate) (Enzyme [Ox])
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Second-generation Glucose biosensors
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Second-generation Glucose biosensors
5-10 nm
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Second-generation Glucose biosensors
ECS Sensors Plus, 2022 1 031601 Current Opinion in Chemical Biology 2006, 10:664–672
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Second-generation Glucose biosensors
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How to extract the current? Electrochemical cell
(Pt) A
Working (Ag/AgCl)
electrode Counter electrode
The above circuit doesn’t tell us how to maintain the voltage across WE and RE …
This is done by a device called “Potentiostat”
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Potentiostat
Potentiostat
A
It controls the voltage difference between a CE
WE
working electrode and a reference electrode V
by negative feedback mechanism. RE
Control amp.
+
Vs – CE
RE
WE
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How does it perform the feedback?
Let’s look at this simplified equivalent circuit,
Interface impedance of
+ V1
the CE and solution
resistance between the
– ic CE and the RE.
First, Control amp. equation: Vs
Z1
V1 = A (VS − VR ) (1)
VR
Interfacial impedance of
Z2 the WE and the solution
resistance between WE
and RE.
The op-amp output current can be written as:
V1 Combining (1) and (2):
iC =
Z1 + Z 2
Z2 VR 1
VR = V1 = V1 (2) =
iC =
VR Z1 + Z 2 VS 1
Z2 +1
A
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Current-to-voltage converter
Control amplifier
+ Vout = −iE R f
Vs – CE Rf
RE
iE
WE – Vout
+
Current follower
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Electrochemical cell used in
blood glucose biosensor
•Working electrode – an inert material,
such as carbon, gold, or platinum.
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Glucose Monitoring - CGM
A typical CGM consists of:
•a disposable glucose sensor
•a link from the sensor to a transmitter;
•an electronic receiver that displays blood glucose levels as well as rising
and falling trends in glycemic (glucose level) excursions.
Sensor inserter
Sensor mount
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Example: Abbott FreeStyle Navigator®
http://www.abbottdiabetescare.co.uk/ 94
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Example: Abbott FreeStyle® Libre
Abbott FreeStyle® Libre
People using CGM system spent 38 % less time within hypoglycemia as compared with
those who managed their glucose with traditional self-monitoring glucose system.
https://www.abbott.com/corpnewsroom/diabetes-care/revolutionizing-cgm-with-freestyle-libre.html
Clinical study: “Bolinder, Jan, et al. Novel glucose-sensing technology and hypoglycemia in type 1 diabetes: a 95
multicentre,
MEDE 4500 non-masked, randomised controlled trial. The Lancet 388.10057 (2016): 2254-2263
Another example:
Medtronic MiniMed
https://www.medtronicdiabetes.com/treatment-and-products/minimed-530g-
diabetes-system-with-enlite
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Insulin Delivery Modes
Insulin Pens/Devices
•An easy-to-use, convenient, and accurate method
of insulin delivery.
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Insulin Delivery Modes
Insulin Pumps
The prototype of the first pump that Omni Pod - the world’s first tubing-free insulin pump.
delivered glucagon as well as insulin,
backpack style, was in the early '60s.
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Insulin Delivery Modes
Insulin Pumps
• Provide continuous insulin delivery
• Infusion site needs to be changed only every 2-3 days
• More reliable, precise insulin action
• Fewer missed doses
• Less insulin stacking
• Fewer social limitations
• Better data access for providers and patients
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Closed Loop – CGM →Insulin pump
• Still needed:
• Faster insulins
• Better CGM accuracy
• Less sensor lag time
Verio ®
iBGStar®
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