Professional Documents
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J Ijporl 2019 04 041
J Ijporl 2019 04 041
Michael W. Mather, MRes, Michael Drinnan, PhD, John D. Perry, PhD, Steven
Powell, MRes, Janet A. Wilson, MD, Jason Powell, PhD
PII: S0165-5876(19)30211-3
DOI: https://doi.org/10.1016/j.ijporl.2019.04.041
Reference: PEDOT 9490
Please cite this article as: M.W. Mather, M. Drinnan, J.D. Perry, S. Powell, J.A. Wilson, J. Powell, A
Systematic Review and Meta-Analysis of Antimicrobial Resistance in Paediatric Acute Otitis Media,
International Journal of Pediatric Otorhinolaryngology, https://doi.org/10.1016/j.ijporl.2019.04.041.
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A Systematic Review and Meta-Analysis of
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Affiliations:
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1
Institute of Cellular Medicine, Newcastle University, Framlington Place, Newcastle upon
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Tyne, NE2 4HH, UK.
2
Department of Otolaryngology, Freeman Hospital, Freeman Road, Newcastle upon Tyne,
7DN, UK.
4
Institute of Health and Society, Newcastle University, Richardson Road, Newcastle upon
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Competing interests Statement: The authors have no conflicts of interest relevant to this
article to disclose.
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Full title: A Systematic Review and Meta-Analysis of Antimicrobial Resistance in
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Michael W. Mather1,2 MRes, Michael Drinnan1 PhD, John D. Perry3 PhD,
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Steven Powell2 MRes, Janet A. Wilson2,4 MD, Jason Powell*1,2 PhD
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Affiliations:
1
Institute of Cellular Medicine, Newcastle University, Framlington Place, Newcastle upon
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Tyne, NE2 4HH, UK.
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2
Department of Otolaryngology, Freeman Hospital, Freeman Road, Newcastle upon Tyne,
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Department of Microbiology, Freeman Hospital, Freeman Road, Newcastle upon Tyne, NE7
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7DN, UK.
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4
Institute of Health and Society, Newcastle University, Richardson Road, Newcastle upon
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Abstract:
Objective of review: Acute otitis media (AOM) is the largest cause of antimicrobial
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prescribing is known to drive antimicrobial resistance, but less is known of antimicrobial
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Type of review & search strategy: We conducted a systematic review and meta-analysis of
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bacterial prevalence and antimicrobial resistance in studies of paediatric AOM identified
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Results: From 48 unique studies, 15,871 samples were included. Only 0.67 (CI 0.63–0.71) of
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all ear samples grew a bacterial pathogen. The most common bacterial causes of AOM in
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children were Streptococcus pneumoniae 0.30 (CI 0.27-0.32), Haemophilus influenza 0.23
(CI 0.20–0.26), and Moraxella catarrhalis 0.05 (CI 0.04–0.06). Resistance patterns varied
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amongst organisms and antimicrobial agents. The pooled proportion of bacterial culture-
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positive episodes of AOM that could be effectively treated with amoxicillin was 0.85 (CI
0.76–0.94), erythromycin was 0.64 (0.48–0.78) and amoxicillin-clavulanate was 0.95 (CI
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0.85–0.98).
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stewardship.
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Five succinct key points:
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1. Two in three samples from middle ear sampling in AOM grew a bacterial pathogen
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2. Common bacterial causes of AOM include Streptococcus pneumoniae, Haemophilus
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3. Antimicrobial resistance to first-line antibiotics is common
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4. Amoxicillin-clavulanate offers a higher chance of bacterial eradication than current
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first-line agents
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Main text –
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Introduction
Acute otitis media (AOM) is defined as the presence of inflammation in the middle ear
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associated with an effusion, and accompanied by the rapid onset of signs and symptoms of an
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ear infection1. It is the single largest cause of infections amongst children 2
and is the most
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countries 1.
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Many national guidelines for AOM recommend either immediate or delayed antimicrobial
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3 4 5 6
prescribing (amoxicillin in most circumstances), or observation with close follow-up .
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These guidelines are, in part, based on work which has shown that after two to three days of
exceptions to this include; children younger than 2 years, those with bilateral AOM, and
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those with AOM and otorrhoea, where antibiotics may be more beneficial 8. Despite these
9 10 11
evidence-based guidelines, large scale studies from North America , Europe , and the
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UK have demonstrated excessive and inconsistent antimicrobial prescribing in paediatric
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Europe alone infections due to drug-resistant bacteria cause in excess of 25,000 deaths and
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cost at least 1.5 billion euros each year in direct healthcare costs and lost productivity .
Furthermore, there is also evidence that specifically associates antimicrobial use to the
development of antimicrobial resistance in AOM, and demonstrates that this increases the
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Recent studies have sought to identify the pathogens responsible for paediatric acute otitis
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media , and older studies have also investigated the overall effectiveness of antibiotics in
children with acute otitis media 8. We present a comprehensive review and meta-analysis, of
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both the microbiology and antimicrobial resistance of AOM organisms to commonly used
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antimicrobial agents, with the aim of informing responsible antimicrobial stewardship.
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Methods
Systematic review
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A comprehensive literature search was performed using Medline, Embase and the Cochrane
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library up to and including January 2017. A keyword search was undertaken using the search
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terms ‘otitis media’ AND each of the following search terms: ‘aetiology’, ‘otopathogens’,
Search results were limited to those that were in the English language, human-only studies,
and published from 1980 onwards. Duplicated articles were removed and abstracts were
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screened for relevance to bacteriology and/or antimicrobial resistance in acute otitis media in
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Relevant articles were read in full to extract data for the meta-analysis. Inclusion criteria
comprised all studies which provided original, non-duplicated quantitative data about the
prevalence of bacteria with or without the number of susceptible, intermediate, and resistant
strains of each species. Sampling methods included those obtained by tympanocentesis and
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otorrhoea from an acute tympanic membrane perforation, or combination of these sampling
techniques.
studies with overlapping data (in which case we include the most recent report), studies
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exclusively sampling tympanostomy tube otorrhoea (except in mixed methods studies in
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which we only included series where tympanostomy tube otorrhoea comprised a small,
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demographic information (e.g. number of participants in study). No studies were excluded on
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the basis of their chosen method of culturing pathogens. Where AOM data was part of a
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larger study, only data relating to AOM was extracted. In drug trials, only the initial
tympanocentesis data (i.e. before participants received the antimicrobial drug under
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Meta-analysis
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All extracted data from the literature was included in the quantitative analysis. Data was
tabulated in Microsoft Excel, then analysed using R (Vienna, Austria), version 3.3.1. Meta-
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analysis was performed using function metaprop and reported using function forest from the
meta library.
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Pooled statistics were created from random-effects and fixed effects (inverse variance) meta-
analyses. Heterogeneity was consistently extremely high (median I2 > 90%), and therefore we
discuss results on the basis of the random-effects meta-analysis. Each study is given a similar
weight, whereas in the fixed-effects analysis all patients are weighted equally and large
studies dominate the analysis. The random effect analysis is the more conservative approach,
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with wider confidence intervals. The methods are described below, with notes on the specific
complicating factors:
Positive culture: For each species separately and for all species together, we report the
number of positive cultures as a proportion of all children assessed. Since some children are
positive for more than one species, or are positive for a rare bacterial species not included in
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our data, the species totals are not necessarily additive to give the overall total.
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Antimicrobial susceptibility: We calculated the antimicrobial susceptibility of three bacterial
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strains, to four common antimicrobials: penicillin; amoxicillin; amoxicillin-clavulanate; and
erythromycin. For the relevant subset of species we also assessed beta-lactamase production
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as a surrogate for resistance to penicillin and amoxicillin.
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In a number of studies, only a subgroup of all positive cultures was assessed for antimicrobial
susceptibility; the size of this subgroup was used as the denominator in the meta-analysis.
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antimicrobial choice will be made without any prior knowledge of the organism involved. We
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therefore assessed the potential effectiveness of each common antimicrobial agent against an
unknown pathogen. For each study, we estimated the overall susceptibility to a specific
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antimicrobial as reported in that study. This was estimated as the susceptibility of a given
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pathogen, weighted by the proportion of cases where that pathogen was present. We
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acknowledge that under this model, bias can be introduced where a particular antimicrobial
agent is not used uniformly against all pathogens, or where multiple pathogens are present in
Results
The literature search yielded 7,598 articles following the key-word search. Studies were
limited to English language, human only studies, and studies from 1980-present day.
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Following deduplication this provided 4,249 unique articles. Abstracts were screened for
identified 204 articles. The full texts and bibliographies were read, and 48 articles 17, 18, 19, 20,
21 22 23 24 25 26 27 28
, , , , , , , , 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52,
53 54 55 56 57 58 59 60 61 62 63 64
, , , , , , , , , , , had quantitative data that could be included in the analysis
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(Figure 1, Table 1). Of these, 8 were retrospective studies, 27 were prospective studies, 4
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were a combination of both prospective and retrospective analysis, and 9 were drug trials. In
total these articles provided data for 15,871 unique episodes of AOM.
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Microbiology
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Our best estimate demonstrated a positive culture in 0.67 (CI 0.63 – 0.71) of all samples. The
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most commonly isolated bacterial species was Streptococcus pneumoniae; a Gram-positive
diplococcus well-known to colonize upper respiratory tract mucosa 65, found in 0.30 (CI 0.27
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- 0.32) of samples. The second most prevalent species was Haemophilus influenzae, a Gram-
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negative coccobacillus 66, which was isolated in 0.23 (CI 0.20 – 0.26) of samples. At 0.05 (CI
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frequent participant, but was the third most commonly isolated species. These are
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summarised in Fig. 2. The frequency of co-detection of multiple species for each sample was
rarely reported in the original studies thereby precluding further analysis of this.
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Antimicrobial susceptibility
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Streptococcus pneumoniae
reported the proportion of samples resistant to penicillin. Testing for other specific drugs,
even commonly used compounds such as amoxicillin, was much less frequent. It is important
to note that whilst amoxicillin is a penicillin-based compound, some work suggests penicillin
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resistance is not fully predictive of resistance to related drugs, such as amoxicillin 40, which
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resistance was most often reported as the proportion of isolates capable of beta-lactamase
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lactam ring structure of commonly used penicillin-based drugs, including amoxicillin,
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thereby conferring a resistant phenotype 67 (Table 2).
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We have demonstrated variable resistance against commonly used antimicrobial agents by
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different AOM-causing bacteria. In most cases antimicrobial prescription decisions will be
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made without knowledge of the causative organism. We therefore assessed the effectiveness
of each antimicrobial agent against all positive bacterial cultures (Table 2). We also examined
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We were unable to identify any obvious trends towards changes in antimicrobial resistance or
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bacteriology of AOM over the period covered in this meta-analysis. Subgroup analysis of
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study cohort age, sampling method and geographical location was severely limited by the
data available.
Discussion
Even when a bacteriological cause for AOM is confirmed, many first-line antimicrobial
treatments for AOM demonstrate drug-resistance. Whilst the analysed data indicates a
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pathogenic bacterial species was isolated in two out of every three cases of AOM, it is
possible that the children in the studies analysed are at the more severe end of the AOM
spectrum as they have engaged with medical services and had an intervention, such as
tympanocentesis.
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pneumoniae and Haemophilus influenzae. Non-susceptibility to commonly used first-line
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agents was found to be high in both Streptococcus pneumoniae and Haemophilus influenzae.
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universal production of beta-lactamase and resistance to amoxicillin. Streptococcus
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pneumoniae demonstrated high resistance to erythromycin; a common first-line agent in
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penicillin allergy. A promising finding was that, whilst studies were limited, susceptibility of
The strengths of this meta-analysis include its comprehensive nature. We included 48 studies
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and some 15,871 unique episodes of AOM. However, there are a number of considerations
required when interpreting these finding. The International Organisation for Standardisation
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intermediate, and resistant categories 68. ‘Susceptible’ bacteria are inhibited in vitro by a drug
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are associated with an uncertain clinical effect. ‘Resistant’ bacteria are associated with a high
likelihood of therapeutic failure. Based on these definitions, we took all samples reported in
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‘breakpoints’. However, as there is geographical variation in these breakpoints comparison
In terms of sampling, most (n=30, 62.5%) studies sampled exclusively via tympanocentesis,
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which has been identified as the ‘gold standard’ for middle ear fluid culture . Some (n=3,
6.3%) studies also identified bacteria exclusively by sampling otorrhoea from the external
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auditory canal following acute tympanic perforation; which potentially risks contamination
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with the native flora of the external auditory canal . The remaining 15 studies (31.3%)
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Studies exclusively examining tympanostomy tube otorrhoea were excluded on the basis that
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they reflect a chronically perforated tympanic membrane and will likely be contaminated
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with migration of commensal species from the external auditory canal . Data from
nasopharyngeal swabs were also excluded as they are felt to be unrepresentative of the
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middle ear70: indeed a recent systematic review found a wide range of concordance between
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nasopharyngeal samples and middle ear samples - from 68 up to 97% 73. Studies specifically
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investigating recurrent or ‘treatment failure’ AOM were excluded on the basis that they
introduce a confounding variable to the analysis and would likely warrant specific
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Whilst most studies to date utilised culture-based methods of bacterial identification, one
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more recent study (Yatyshina et al. 2016) used polymerase chain reaction (PCR) technology
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. This study appeared to have higher rates of bacterial detection compared to the average
over all studies, which suggests that culture-dependent detection might underestimate the
PCR may alter the detection of bacteria, this technique will not alter the ways in which
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There is also inconsistency between included studies in terms of diagnostic criteria for AOM.
Other studies have found that diagnoses of AOM are not always supported by positive
physical examination findings74; and therefore it is plausible that a number of studies which
did not demonstrate a positive bacterial culture result were not in fact AOM. The possibility
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Consideration also ought to be given to the lack of quantification of variables known to alter
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antimicrobial resistance, such as previous antimicrobial therapy13. Indeed, a substantial
problem affecting all studies of antimicrobial resistance is that whilst a prescription may have
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been provided to a patient; few studies confirm that the antibiotics were actually dispensed
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and administered. As such, the stated rates of antimicrobial prescribing may be overstated
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compared to the true figures.
Further confounding factors include the different geographical locations of the studies; each
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perform subgroup analysis of antimicrobial resistance by continent but, whilst effects were
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suggested, the small group sizes and potential confounding factors preclude drawing reliable
different locations at different points in time precluded further analysis of this, but would be
Another consideration is the variable rates of, and often lack of documentation of,
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pneumococcal (PCV) and Haemophilus influenzae type B (Hib) vaccination and the impact
on resistance. Although we were unable to control for this variable in countries with universal
vaccination against Haemophilus influenzae it may be that other species are relatively more
prevalent causes of AOM, which will have correspondingly different levels of antimicrobial
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available without prescription, one may find higher levels of drug-resistant bacteria compared
to our pooled data, however we were unable to control for these factors.
There is also the challenge of consistent patient selection across so many studies. Although a
definition of AOM is provided1, not all papers had identical inclusion criteria. Two large
trials (Hoberman NEJM 2016 & Tahtinen NEJM 2011) suggested that use of very stringent
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inclusion criteria revealed a high percentage of pathogen isolated compared to the mean
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values reported in this analysis.
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Whilst we were unable to identify a statistically significant rise in non-susceptibility to
penicillin over time amongst all species tested (Figure 3) factors such as disparate geography
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and variable vaccination schedules may reduce the reliability of this for any one specific
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location and time point. The introduction of different guidelines over time may also affect the
estimate.
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We include children and adolescents up to 18 years because many of the published studies
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presented this range as their inclusion criteria. Furthermore, patient age was often not defined
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beyond the descriptor of less than 18 years so further data extraction and subgroup analysis
was not possible. AOM is most commonly a disease of early childhood 1. As anatomy and
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immunology changes during childhood, it is possible that these factors alter AOM
bacteriology and antimicrobial resistance patterns as a child ages, however such data was not
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Other important considerations are the paucity of data on biofilms in the included studies,
which have known importance in OM76. One must also consider the selection of only English
language studies which may have excluded relevant articles in other languages.
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It was been well-described that acute otitis media may be associated with diagnostic
uncertainty. Emphasis must therefore be made on treating true episodes of AOM with an
effective antimicrobial agent for an appropriate duration. However, this data suggests many
therefore of no clinical benefit. For example, our global estimates suggest that Erythromycin
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is frequently ineffective – and yet still confers risks of adverse drug reactions. This therefore
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suggests its role as a first line agent may be limited.
A meta-analysis by Rosenfeld et al. demonstrated that over 60% of cases of AOM resolve
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spontaneously after 24 hours, and 80% within 2-3 days, when not treated with antimicrobial
drugs 7. Some clinicians might consider prescribing them in an attempt to mitigate the risk of
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developing serious complications of AOM. However, a retrospective analysis of the records
of 2.5 million children found that while administration of antimicrobial therapy in primary
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care reduced the incidence of mastoiditis, 4,831 episodes of otitis media needed to be treated
Ineffective treatment of resistant bacteria confers all the risks of drug side-effects for the
patient without providing any benefits. These risks are not inconsiderable; a recent Cochrane
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review found that one in fourteen patients will experience an adverse event, including
vomiting, diarrhoea, or a rash78. Furthermore, continued use of these agents may continue to
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Conclusions
Commonly used first-line antimicrobial agents are unlikely to confer any positive effect in
many cases of paediatric AOM. Firstly, due to the frequently non-bacterial nature of the
condition; and secondly, the evidence of bacterial resistance to commonly used first-line
antimicrobial agents.
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Van Eldere, J., Slack, M. P. E., Ladhani, S. & Cripps, A. W. Non-typeable
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Haemophilus influenzae, an under-recognised pathogen. The Lancet Infectious Diseases 14,
1281-1292 (2014).
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68 ISO - "Clinical laboratory testing and in vitro diagnostic test systems — Susceptibility
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devices"
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cultures prior to and at onset of acute otitis media with middle ear fluid cultures. BMC
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71 Principi, N., Marchisio, P., Rosazza, C., Sciarrabba, C. S. & Esposito, S. Acute otitis
media with spontaneous tympanic membrane perforation. Eur J Clin Microbiol Infect Dis 36,
11-18 (2017).
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73 van Dongen, T. M. et al. Evaluation of concordance between the microorganisms
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detected in the nasopharynx and middle ear of children with otitis media. Pediatr Infect Dis J
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32, 549-552 (2013).
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(Phila) 58(1):60-65 (2019).
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national pharmaceutical sales data. Lancet Infect Dis 14, 742-750 (2014).
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76 Vermee, Q., Cohen. R., Hays, C., Varon, E., Bonacorsi, S., Bechet, S., Thollot,
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F., Corrard, F., Poyart, C., Levy, C., & Raymond, J. Biofilm production by Haemophilus
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influenzae and Streptococcus pneumoniae isolated from the nasopharynx of children with
a retrospective cohort study using the United kingdom general practice research database.
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Antibiotics for acute otitis media in children. Cochrane Database of Systematic Reviews
(2015).
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Author contributions: MM was responsible for the conception and content of the article,
the database searches, data interpretation, and preparation of the manuscript. MD performed
the statistical analysis, data interpretation, and assisted in manuscript preparation. JDP
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interpretation of data and manuscript preparation. JP was responsible for the conception and
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content of the article, data interpretation, and preparation of the manuscript. All authors
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Data availability: The datasets generated during and/or analysed during the current study are
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available from the corresponding author on reasonable request.
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Funding source: This work received no specific funding.
Competing interests Statement: The authors have no conflicts of interest relevant to this
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article to disclose.
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documented)
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Table 2 - Measures of antibiotic effectiveness for commonly tested antibiotic agents against
the most common acute otitis media pathogens. Each cell shows: (top) estimate of
effectiveness; (centre) 95% confidence intervals; (bottom) number of studies (st) and patients
(px) pooled.
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Table 1 - Descriptive statistics of studies included in quantitative analysis (ND=Not
documented)
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Reference
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Sakran 2006 Israel 100 - - 2002 2004 0 2 68
Patel 2007 USA 100 - - 1989 1998 2 84 982
Aguilar 2009 Costa Rica 100 - - 2002 2007 2 92 880
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Brook 2009 USA - 100 - 1998 2006 5 144 124
Yano 2009 Japan 100 - - 2002 2004 0 120 1092
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Grubb 2010 USA 100 - - 2005 2009 ND ND 184
Parra 2011 Mexico 82 18 - 2008 2009 3 60 121
Sierra 2011 Colombia 85 15 - 2008 2009 3 60 99
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Grevers 2012 Germany 24 76 - 2008 2010 3 60 100
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Naranjo 2012 Venezuela 90.1 9.9 - 2008 2009 0 60 91
Casey 2013 USA 100 - - 2008 2010 6 36 208
Chen 2013 Taiwan - 100 - 2011 2012 0 215 69
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Falup-Pecurariu
Romania 67.0 33.0 - 2009 2011 0 59 212
2013
Al-Mazrou 2014 Saudi Arabia 69 31.0 - 2009 2011 3 60 75
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Streptococcus [0.69 to 0.95] [0.51 to 0.68] [0.81 to 0.98] [0.48 to 0.78]
pneumoniae
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9 st, 1121 px 29 st, 2704 px 8 st, 888 px 14 st, 976 px
0.82 0.43 0.98 0.53 0.71
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Haemophilus [0.67 to 0.92] [0.05 to 0.92] [0.88 to 1.00] [0.30 to 0.74] [0.61 to 0.79]
influenza
5 st, 238 px 3 st, 46 px 7 st, 564 px 1 st, 17 px *** 25 st, 2280 px
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0.12 0.13 0.98 0.07
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Moraxella catarrhalis [0.01 to 0.65] [0.01 to 0.63] [0.91 to 1.00] [0.03 to 0.17]
3 st, 58 px 3 st, 63 px 3 st, 77 px 0 st, 0 px 13 st, 205 px
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0.85 0.56 0.95 0.64
All samples (excluding [0.73 to 0.93] [0.47 to 0.65] [0.85 to 0.98] [0.48 to 0.78]
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negative cultures)
11 st, 1417 px 29 st, 2813 px 10 st, 1529 px 14 st, 993 px
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Table 2 - Measures of antibiotic effectiveness for commonly tested antibiotic agents against the most common acute otitis media pathogens.
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Each cell shows: (top) estimate of effectiveness; (centre) 95% confidence intervals; (bottom) number of studies (st) and patients (px) pooled.
*** Data based on the single study entered into the meta-analysis.
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Identification
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(n = 7598) (n = 0)
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Records after duplicates removed
(n = 4249)
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Screening
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Abstracts screened Abstracts excluded
(n = 4249) (n = 4045)
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(n = 156)
(n =204)
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Studies included in
qualitative synthesis
(n = N/A)
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Included
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Studies included in
quantitative synthesis
(meta-analysis)
(n = 48)
From: Moher D, Liberati A, Tetzlaff J, Altman DG, The PRISMA Group (2009). Preferred Reporting Items for Systematic Reviews and Meta-
Analyses: The PRISMA Statement. PLoS Med 6(7): e1000097. doi:10.1371/journal.pmed1000097
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Figure 3: Time course of non-susceptibility to penicillin amongst all bacterial isolates (p=0.756, r2=0.003
37 studies; n=15,073 patients). Size of dot equates to number of participants in study.