RNA motif discovery: a

computational overview
RNA structure
Representation of RNA structure
Elements of RNA structure
Function of RNA structure
 RNA structure vs. protein structure
 Predicting RNA structure is easier
 Predicting RNA structure is more difficult
 Methods for RNA structure
prediction
 Minimum free energy
 Alignment-based
 Methods for RNA motif discovery
 Stochastic
 Stem-based
 Alignment-based
 Miscellaneous
 Stochastic algorithms
 Probabilistic learning problem
 Covariance models
 Stochastic algorithms
 MEME algorithm
 MEMERIS algorithm
 Covariance models and COVE algorithm
 Cmfinder
 RNApromo
 Stem-based algorithms
 comRNA algorithm
 RNAmine algorithm
Alignment-based methods