Professional Documents
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Techniques in Biotechnology
MA. JOY O. JOCOSOL
EASTERN SAMAR STATE UNIVERSITY
• Tissue Culture
• DNA Extraction
• DNA Cloning
TOPICS • Gene Coding
• Gene Gun and Alternative
Techniques
• Backcross Breeding
• Cloning
• DNA Sequencing
DNA Extraction is a
technique in
biotechnology which
involves isolation of
DNA in an organism.
• Importance
The extraction of DNA is pivotal to biotechnology. It is
the starting point for numerous applications, ranging
from fundamental research to routine diagnostic and
therapeutic decision-making. Extraction and purification
are also essential to determining the unique
characteristics of DNA, including its size, shape and
function.
2021 Techniques in Biotechnology 15
2. DNA EXTRACTION
• DNA was first isolated by the Swiss physician, Friedrich Miescher, in
1869 while working in the laboratory of the biochemist Felix Hoppe-
Seyler. This he did as part of a project to determine the chemical
composition of cells which he saw as the means to unravelling the
fundamental principles of the life of cells. Initially, he began this research
by using lymphocytes drawn from lymph nodes but was unable to get
sufficient quantities for analysis so switched to using leucocytes, white
blood cells, which he gathered from pus found on fresh surgical
bandages collected from a nearby surgical clinic. In the course of his
work on leucocytes he noticed the precipitation of a substance when
acid was added and that this dissolved following the addition of alkali.
Application
The ability to extract DNA is of primary importance to
studying the genetic causes of disease and for the
development of diagnostics and drugs. It is also
essential for carrying out forensic science,
sequencing genomes, detecting bacteria and viruses
in the environment and for determining paternity.
• Before discussing the major role of DNA, it is important to discuss DNA’s first cousin, ribonucleic acid or RNA. Besides
its chemical composition, RNA has important similarities and differences with DNA. First, like DNA, RNA has four and
only four nucleotides. But unlike DNA, RNA uses the nucleotide uracil (abbreviated as U) in place 7 In addition to
physically supporting and organizing DNA, proteins in the chromosomes may also have a functional role in gene
expression. Thus, the four RNA nucleotides are adenine (A), cytosine (C), guanine (G), and uracil (U). Second, the
nucleotides in RNA also exhibit complementary base pairing. The RNA nucleotides may pair with either DNA or other
RNA molecules. When RNA pairs with DNA, G always pairs with C, 8 T in DNA always pairs with A in RNA, but A in DNA
pairs with U in RNA. When RNA pairs with RNA, then G pairs with C and A pairs with U. Third, RNA is single-stranded
while DNA is double-stranded. That is, RNA does not have the ladder-like structure of the DNA. Instead, RNA would look
like after the ladder was sawed down the middle and one half of it discarded (with, of course, the added proviso that U
would substitute for T in the remaining half). Fourth, while there is one type of DNA, there are several different types of
RNA, each of which perform different duties in the cell. Think of DNA as the monarch of the cell, giving all the orders.
Unlike human monarchs, however, king DNA is unable to leave the throne room (i.e., the cell’s nucleus) and hence, can
never execute his own orders. The different types of RNA correspond to the various types of henchmen who carry out
the King’s orders. Some occupy buildings in outlying districts (ribosomal RNA), others transport material to strategic
locations (transfer RNA), while yet others act as messengers to give instructions on what to build (messenger RNA).
Promoter:
Promoters control the location and magnitude of gene expression and function as “the steering wheel
and gas pedal” of a gene. Promoters precede the gene of interest in the DNA construct and can be
changed through laboratory design to fine-tune transgene expression. The 35S promoter from
Cauliflower mosaic virus is an example of a commonly used promoter that results in robust constitutive
gene expression within plants.
Terminator sequences are required for proper gene expression and are placed after the coding
region of the gene of interest within the DNA construct. A common terminator for biolistic
transformation is the NOS terminator derived from Agrobacterium tumefaciens. Due to the high
frequency of use of this terminator in genetically engineered plants, strategies have been
developed to detect its presence within the food supply to monitor for unauthorized GE crops.
Reporter gene:
A gene encoding a selectable marker is a common element within DNA constructs and is used to
select for properly transformed cells. The selectable marker chosen will depend on the species
being transformed, but it will typically be a gene granting cells a detoxification capacity for certain
herbicides or antibiotics such as kanamycin, hygromycin B, or glyphosate.
Biolistics has proven to be a versatile method of genetic modification and it is generally preferred to
engineer transformation-resistant crops, such as cereals. Notably, Bt maize is a product of
biolistics.Plastid transformation has also seen great success with particle bombardment when
compared to other current techniques, such as Agrobacterium mediated transformation, which
have difficulty targeting the vector to and stably expressing in the chloroplast. In addition, there are
no reports of a chloroplast silencing a transgene inserted with a gene gun. Additionally, with only
one firing of a gene gun, a skilled technician can generate two transformed organisms. This
technology has even allowed for modification of specific tissues in situ, although this is likely to
damage large numbers of cells and transform only some, rather than all, cells of the tissue.
Biolistics introduces DNA randomly into the target cells. Thus the DNA may be transformed into
whatever genomes are present in the cell, be they nuclear, mitochondrial, plasmid or any others, in
any combination, though proper construct design may mitigate this. The delivery and integration of
multiple templates of the DNA construct is a distinct possibility, resulting in potential variable
expression levels and copy numbers of the inserted gene. This is due to the ability of the constructs
to give and take genetic material from other constructs, causing some to carry no transgene and
others to carry multiple copies; the number of copies inserted depends on both how many copies of
the transgene an inserted construct has, and how many were inserted. Also, because eukaryotic
constructs rely on illegitimate recombination—a process by which the transgene is integrated into the
genome without similar genetic sequences—and not homologous recombination, they cannot be
targeted to specific locations within the genome, unless the transgene is co-delivered with genome
editing reagents.
• Sequencing DNA means determining the order of the four chemical building blocks - called "bases" -
that make up the DNA molecule. The sequence tells scientists the kind of genetic information that is
carried in a particular DNA segment. For example, scientists can use sequence information to
determine which stretches of DNA contain genes and which stretches carry regulatory instructions,
turning genes on or off. In addition, and importantly, sequence data can highlight changes in a gene
that may cause disease.
• In the DNA double helix, the four chemical bases always bond with the same partner to form "base
pairs." Adenine (A) always pairs with thymine (T); cytosine (C) always pairs with guanine (G). This
pairing is the basis for the mechanism by which DNA molecules are copied when cells divide, and the
pairing also underlies the methods by which most DNA sequencing experiments are done. The
human genome contains about 3 billion base pairs that spell out the instructions for making and
maintaining a human being.
2021 Techniques in Biotechnology 53
8. DNA SEQUENCING
• How new is DNA sequencing?