arrangement of the atoms that constitute a molecule.
• It includes the general shape of the molecule
as well as bond lengths, bond angles, torsional angles and any other geometrical parameters that determine the position of each atom. • Molecular geometry influences several properties of a substance including its reactivity, polarity, phase of matter, color, magnetism and biological activity.
• The angles between bonds that an atom forms
depend only weakly on the rest of molecule. • Molecules, by definition, are most often held together with covalent bonds involving single, double, and/or triple bonds, where a "bond" is a shared pair of electrons (the other method of bonding between atoms is called ionic bonding and involves a positive cation and a negative anion).
• Molecular geometries can be specified in terms of
bond lengths, bond angles and torsional angles. • The bond length: is defined to be the average distance between the nuclei of two atoms bonded together in any given molecule. • A bond angle: is the angle formed between three atoms across at least two bonds. • Molecular geometry is determined by the quantum mechanical behavior of the electrons. Using the valence bond approximation this can be understood by the type of bonds between the atoms that make up the molecule. • When atoms interact to form a chemical bond, the atomic orbitals of each atom are said to combine in a process called orbital hybridisation. • Electron Geometry vs Molecular Geometry • Molecular geometry is described as the 3D arrangement of atoms in a molecule, normally relative to a single central atom. • Whereas, electron geometry is the 3D arrangement of electron pairs around a central atom, whether bonding or non-bonding. • A lone (non-bonding) pair refers to a pair of valence electrons that are not shared with another atom in a covalent bond. And a bond pair is a pair of electrons in a bond. • These arrangements are illustrated below with balloons and models of molecules for each. • Determination of molecular geometry • Several methods have developed to determine the distance between the various atoms in a molecule and also the angle in the bond involved. However, the geometries and observed shape of the covalent molecules can be predicted theoretically with the help of valence shell electron pair repulsion theory (VSEPR theory). The VSEPR model • The valence shell electron pair repulsion model assumes that electron pairs repel one another. • This produces a set of molecular geometries which depend only on the number of valence shell electron pairs and not on the nature of the atoms present. VSEPR theory The main features of VSEPR theory are: • The shape of a molecule depends upon the number of valence shell electron pairs (bonded or non-bonded) around the central atom. • Pairs of electrons in the valence shell repel one another since their electron clouds are negatively charged. • The positions of the electron pairs in space around the central atom are such that they minimize repulsion and thus maximize distance between them. • These repulsive forces alter the bond angles of the molecule or ion. • The electronic repulsion between two pairs of electrons will be minimum if they are as far apart as possible. On this basis, the following geometrical arrangements are most suited. • It is well known that the electron pairs, being negatively charged, repel each other. This repulsion causes the electron pairs around the central atom to arrange as far apart from each other as possible. This minimizes the repulsion. • Under the influence of a single nucleus, a lone pair offers more repulsion than a bond pair which is influenced by two nuclei. This causes a slight decrease in bond angles (angles between bonds or bond pairs). • If all of the electron groups are bond pairs (no lone pairs), the molecular geometry and electron geometry are the same. An example is a methane molecule, CH4 with 4 bond pairs and no lone pairs, all 4 of carbon’s valence electrons are bonded with hydrogen atoms. Its molecular, as well as electronic geometry, is tetrahedral. • An example with differing molecular and electron geometries is that of ammonia, NH3. With the central atom nitrogen having 5 valence electrons, it possesses 3 bond pairs and a lone pair of electrons. Its molecular geometry is trigonal pyramidal while its electron geometry is tetrahedral. Types of molecular structure • A bond angle is the geometric angle between two adjacent bonds. Some common shapes of simple molecules include: • Linear: In a linear model, atoms are connected in a straight line. The bond angles are set at 180°. Ex: carbon dioxide and nitric oxide have a linear molecular shape.
• Trigonal planar: Molecules with the trigonal planar shape
are somewhat triangular and in one plane (flat). Consequently, the bond angles are set at 120°. For example, boron trifluoride. • (iii) Tetrahedral molecular geometry: • In a tetrahedral molecular geometry, a central atom is located at the center with four substituents that are located at the corners of a tetrahedron. • The bond angle of the structure 109028’. • Example: CH4, CCl4 etc. • (iv) Trigonal Bipyramidal molecular geometry: • Let’s take an example of PF5. Here, repulsion can be minimized by even distribution of electrons towards the corner of a trigonal pyramid. In a trigonal bipyramid, three positions lie along the equator of the molecule. The two positions lie along an axis perpendicular to the equatorial plane. • The bond angle are 900 and 1200 • (v) Octahedral molecular geometry: • Octahedral molecular geometry describes the shape of compounds with six atoms or groups of atoms or ligands symmetrically arranged around a central atom, defining the vertices of an octahedron. • The bond angle is 900. • Example: SF6, TeF6 etc.