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Antivirals
Antivirals
• Antiviral drugs are a class of medication used specifically for treating viral infections.
– Like antibiotics for bacteria, specific antivirals are used for specific viruses.
– Unlike most antibiotics, antiviral drugs do not destroy their target pathogen; instead
they inhibit their development.
• Antiviral drugs are one class of antimicrobials, a larger group which also includes
antibiotic, antifungal and antiparasitic drugs.
– They are relatively harmless to the host, and therefore can be used to treat infections.
– They should be distinguished from viricides, which are not medication but destroy virus
particles outside the body.
• Most of the antivirals now available are designed to help deal with
– HIV
– Herpes viruses
– Hepatitis B and C viruses
– Influenza A and B viruses.
• Designing safe and effective antiviral drugs is difficult, because viruses use the host's
cells to replicate.
– This makes it difficult to find targets for the drug that would interfere with the virus without
also harming the host organism's cells.
• The emergence of antivirals is the product of a greatly expanded knowledge of the
genetic and molecular function of organisms, allowing biomedical researchers to
understand the structure and function of viruses, major advances in the techniques
for finding new drugs, and the intense pressure placed on the medical profession to
deal with the human immunodeficiency virus (HIV), the cause of the deadly acquired
immunodeficiency syndrome (AIDS) pandemic.
• Almost all anti-microbials, including anti-virals, are subject to drug resistance as the
pathogens mutate over time, becoming less susceptible to the treatment.
– A recent study published in Nature Biotechnology emphasized the urgent need for
augmentation of oseltamivir (Tamiflu) stockpiles with additional antiviral drugs including
zanamivir (Relenza) based on an evaluation of the performance of these drugs in the
scenario that the 2009 H1N1 'Swine Flu' neuraminidase (NA) were to acquire the tamiflu-
resistance (His274Tyr) mutation which is currently widespread in seasonal H1N1 strains.
History
• Once attached to
its specific target
cell, virus injects
its DNA (or RNA)
into the host cell.
• Once inside the
'infected' cell, this
viral DNA (or RNA)
replicates itself as
well as using the
existing machinery
within the 'infected'
cell to make more
viral proteins.
• It then assembles
itself and can now
leave this cell to
infect other cells.
The structure and workings
of DNA (or RNA)
• All the DNA strand consists of are 5-carbon
deoxyribose (or ribose) sugars linked together
by phosphate groups.
– Additionally, each 5-carbon sugar has one of four
possible bases attached: A, G, C, or T.
– So in order to elongate a strand of DNA (or RNA),
the cell simply links the 'sugar-base-phosphate'
unit onto the existing 'sugar-base-phosphate' units
already linked together forming the strand of DNA.
– We oversimplify this by saying that the DNA strand
grows by adding additional bases.
• For example, our simplified explanation says
that the DNA strand grows by adding an "A", or
"G", or "C", or "T" base, one at a time.
• Remember that this "A", or "G" or "C" or "T" is
the 'sugar-base-phosphate' unit with the base
being either A, G, C, or T.
• This is an oversimplified but essentially
accurate explanation of how several antiviral
drugs work.
– The antiviral drug will be incorporated into the
growing DNA (or RNA) strand as if it were another
'sugar-base-phosphate' unit.
– Once this drug is incorporated into the growing
DNA strand, no other 'sugar-base-phosphate' units
can be attached, and so any further grows stops.
Hence, terminating the growth of viral DNA within
the infected cell.
• Acyclovir is an antiviral drug for herpes simplex
infection.
– Acyclovir is an analog of 2-deoxyguanosine ("G").
– The acyclovir is in fact modified by enzymes made
only by the virus so that the acyclovir can now be
incorporated into the growing viral DNA strand
instead of the "G".
– Once incorporated, any further elongation stops
because unlike "G" that should be there, the
acyclovir cannot attach any further nucleoties
(acyclovir cannot attach any further "A"'s, or "G"'s,
or "C"'s, or "T"'s).
• A herpes simplex virus attaches to a susceptible host cell (seen on
the right), fusing its envelope with the cell membrane, and releasing
naked capsids that deliver viral DNA into the nucleus of the host cell,
where it initiates the synthesis of viral DNA.
• Acyclovir molecules entering the cell are converted to acyclovir
monophosphate by virus induced thymidine kinase enzyme.
Host-cell enzymes add two more phosphates to form acyclovir
triphosphate, which is transported to the nucleus.
Shown in red is the cleavage of phosphate from the acyclovir
triphosphate by the herpes simplex's own enzymes, the herpes
simplex's DNA polymerase enzyme incorporates the acyclovir
monophosphate into the growing DNA strand as if it were 2-
deoxyguanosine monophosphate (a "G" base).
• Further elongation of the chain is impossible because acyclovir
monophosphate lacks the attachment point necessary for the
insertion of any additional nucleotides.
• I. The acyclovir (as do other antiviral drugs) is mistakenly
incorportated into the growing DNA strand. The enzymes adding in
"A"'s, or "G"'s, or "C"'s, or "T"'s recognize acyclovir as a "G" and add
it in.
• II. The acyclovir does not have the proper structure to add any
additional "A"'s, or "G"'s, or "C"'s, or "T"'s to it, and so the DNA
strand cannot continue to elongate or grow. Once the acyclovir is
incorporated, any further growth of viral DNA is terminated.
• III. If I swallow my acyclovir drugs, isn't acyclovir going into all of my
cells, and blocking the growth (or replication) of all my cell's DNA,
not just the cells infected with virus? Not necessarily. As you read,
the conversion of the original acyclovir into the form that is
incorporated into the DNA is carried out by the virus's own enzyme.
Therefore, only those cells that are infected with the virus will have
this specific enzyme and convert the original acyclovir into the
acyclovir that can be incorporated as a "G" base. Also, only the cells
infected with virus have the enzyme that mistakenly recognizes
acyclovir as a "G" base and puts it into the growing DNA strand. So,
again, all of your non-virally infected cells will not that this viral
enzyme and so not put acyclovir into growing DNA.
• As new viruses emerge from the host
cell, they are coated in a layer of
glycolipid originating from the cell
membrane. Haemagglutinin receptors
from the virus are bound to these
glycolipids. Neuraminidase cleaves the
glycolipid from the haemagglutinin
thus releasing the virus completely
from the host cell.
• The surfaces of influenza viruses are
dotted with neuraminidase proteins.
Neuraminidase, an enzyme, breaks
the bonds that hold new virus particles
to the outside of an infected cell. Once
the enzyme breaks these bonds, this
sets free new viruses that can infect
other cells and spread infection.
Neuraminidase inhibitors block the
enzyme's activity and prevent new
virus particles from being released,
thereby limiting the spread of infection
Induced fit of an
enzyme inhibitor
Uncoating inhibitor
• Inhibitors of uncoating have also been investigated
• Amantadine and rimantadine, have been introduced to
combat influenza. These agents act on
penetration/uncoating.
• Pleconaril works against rhinoviruses, which cause the
common cold, by blocking a pocket on the surface of the
virus that controls the uncoating process.
– This pocket is similar in most strains of rhinoviruses and
enteroviruses, which can cause diarrhea, meningitis, conjunctivitis
, and encephalitis.
Viral Penetration/Fusion
inhibitors
•
After attachment is completed, viral penetration
occurs.
• Penetration allows the nucleocapsid - the
genetic core - of the virus to be injected directly
into the cell's cytoplasm.
• gp120 actually contains three sugar-coated
proteins (glycoproteins) and, once gp120
attaches itself to CD4, these three proteins
spread apart.
• This allows the gp41 protein, which is normally
hidden by the gp120 proteins, to become
exposed and bind to the chemokine receptor.
• Once this has occurred, the viral envelope and
the cell membrane are brought into direct
contact and essentially melt into each other.
• Drugs called fusion inhibitors prevent the binding
of gp41 and the chemokine receptor.
• T-20 (Enfuvirtide, Fuzeon), an experimental
fusion inhibitor that is nearing FDA approval,
binds to a portion of gp41, preventing it from
binding to the chemokine receptor.
Uncoating inhibitor
• Once HIV has penetrated the cell
membrane, it is ready to release its
genetic information (RNA) into the cell.
• The viral RNA is protected in the
nucleocapsid.
• The nucleocapsid needs to be partially
dissolved so that the virus's RNA can be
converted into DNA, a necessary step if
HIV's genetic material is to be
incorporated into the T-cell's genetic
core.
• Inhibitors of uncoating have also been
investigated
• Amantadine and rimantadine, have been
introduced to combat influenza. These
agents act on penetration/uncoating.
• Pleconaril works against rhinoviruses,
which cause the common cold, by
blocking a pocket on the surface of the
virus that controls the uncoating
process.
– This pocket is similar in most strains
of rhinoviruses and enteroviruses,
which can cause diarrhea,
meningitis, conjunctivitis, and
encephalitis.
• The process by which HIV's RNA is converted to
Reverse Transcription DNA is called reverse transcription.
• This transcription process happens in almost
every human cell, but in the opposite direction
- from DNA to RNA.
• DNA from the cell nucleus is transcribed into
messenger RNA, which then directs the cell's
various metabolic functions needed to do its job in
the body.
• HIV uses an enzyme called reverse transcriptase
to accomplish this transcription.
• The single-stranded viral RNA is transcribed into a
double strand of DNA, which contains the
instructions HIV needs to hijack a T-cell's genetic
machinery in order to reproduce itself.
• Reverse transcriptase uses nucleotides - building
blocks of DNA - from the cell cytoplasm to make
this process possible.
• Drugs called reverse transcriptase inhibitors
block HIV's reverse transcriptase from using
these nucleotides.
• Nucleoside and nucleotide analog reverse
transcriptase inhibitors (NRTIs) - such as Zerit,
Epivir, and Viread - contain faulty imitations of the
nucleotides found in a T-cell's cytoplasm.
– Instead of incorporating a nucleotide into the
growing chain of DNA, the imitation building blocks
in NRTIs are inserted, which prevents the double
strand of DNA from becoming fully formed.
– Non-nucleoside reverse transcriptase inhibitors
(NNRTIs) - such as Viramune and Sustiva - block
reverse transcription by attaching to the enzyme in
a way that prevents it from functioning
Drugs acting during viral synthesis
• Reverse transcription
– One way of doing this is to develop nucleotide or
nucleoside analogues that look like the building
blocks of RNA or DNA, but deactivate the enzymes
that synthesize the RNA or DNA once the analogue
is incorporated.
– This approach is more commonly associated with
the inhibition of reverse transcriptase (RNA to
DNA) than with "normal" transcriptase (DNA to
RNA).
– The first successful antiviral, acyclovir, is a
nucleoside analogue, and is effective against
herpesvirus infections.
– The first antiviral drug to be approved for treating
HIV, zidovudine (AZT), is also a nucleoside
analogue.
• An improved knowledge of the action of reverse
transcriptase has led to better nucleoside
analogues to treat HIV infections.
• One of these drugs, lamivudine, has been
approved to treat hepatitis B, which uses reverse
transcriptase as part of its replication process.
Researchers have gone further and developed
inhibitors that do not look like nucleosides, but
can still block reverse transcriptase.
• Another target being considered for HIV antivirals
include RNase H - which is a component of
reverse transcriptase that splits the synthesized
DNA from the original viral RNA .
Nucleoside reverse transcriptase
inhibitors
• Abacavir
• Didanosine
• Lamivudine
• Stavudine
• Zalcitabine
• Zidovudine
Nonnucleoside reverse transcriptase
inhibitors
• Delavirdine
• Efavirenz
• Nevirapine
• Tenofovir
Drugs acting during viral synthesis
• If HIV succeeds in translating its
instructions from RNA to DNA, HIV must
then insert its DNA (also called the
preintegration complex) into the cell's
DNA.
– This process is called integration.
– In most human cells cell's DNA is
stored, in the nucleus
– In order for integration to occur, the
newly translated DNA must be
transported across the nuclear
membrane into the nucleus
• Once the viral RNA has successfully
bridged the nuclear membrane and been
escorted to the nucleus, HIV uses an
enzyme called integrase to insert HIV's
double-stranded DNA into the cell's
existing DNA. Integrase
• Another target for drugs is integrase,
which splices the synthesized DNA into
the host cell genome.
• Drugs that inhibit the HIV
preintegration complex from traveling
to the nucleus - integrase inhibitors -
are currently in early clinical trials
Viral Latency and Protein Synthesis
• Translation / ribozymes
– Yet another antiviral technique inspired by genomics is a set of drugs based on ribozymes,
which are enzymes that will cut apart viral RNA or DNA at selected sites. In their natural
course, ribozymes are used as part of the viral manufacturing sequence, but these synthetic
ribozymes are designed to cut RNA and DNA at sites that will disable them.
– A ribozyme antiviral to deal with hepatitis C has been suggested, and ribozyme antivirals are
being developed to deal with HIV.An interesting variation of this idea is the use of
genetically modified cells that can produce custom-tailored ribozymes.
– This is part of a broader effort to create genetically modified cells that can be injected into a
host to attack pathogens by generating specialized proteins that block viral replication at
various phases of the viral life cycle.
• Protease inhibitors
– Some viruses include an enzyme known as a protease that cuts viral protein chains apart so
they can be assembled into their final configuration. HIV includes a protease, and so
considerable research has been performed to find "protease inhibitors" to attack HIV at that
phase of its life cycle.
– Protease inhibitors became available in the 1990s and have proven effective, though they
can have unusual side effects, for example causing fat to build up in unusual places.
– Improved protease inhibitors are now in development.
– Protease inhibitors have also been seen in nature.
• A protease inhibitor was isolated from the Shiitake mushroom (Lentinus edodes).
• The presence of this may explain the Shiitake mushrooms noted antiviral activity in vitro.
Protease inhibitors
• Indinavir
• Ritonavir
• Saquinavir
• Nelfinavir
• Amprenavir
• Lopinavir
Drugs acting during viral synthesis
• Translation / antisense
• Genomics has not only helped find targets for many antivirals, it has
provided the basis for an entirely new type of drug, based on "antisense"
molecules. These are segments of DNA or RNA that are designed as
complementary molecule to critical sections of viral genomes, and the
binding of these antisense segments to these target sections blocks the
operation of those genomes. A phosphorothioate antisense drug named
fomivirsen has been introduced, used to treat opportunistic eye infections in
AIDS patients caused by cytomegalovirus, and other antisense antivirals are
in development. An antisense structural type that has proven especially
valuable in research is morpholino antisense.
• Morpholino oligos have been used to experimentally suppress many viral
types:
• caliciviruses
• flaviviruses (including WNV)
• dengue
• HCV]
• coronaviruses
Drugs acting during viral synthesis
• Transcription
• Once a virus genome becomes
operational in a host cell, it then
generates messenger RNA
(mRNA) molecules that direct
the synthesis of viral proteins.
Production of mRNA is initiated
by proteins known as
transcription factors. Several
antivirals are now being
designed to block attachment of
transcription factors to viral
DNA.
Budding
• Cyclovir
• Herpex
• Acivir
• Acivirax
• Zovirax
• Zovir
Aciclovir
• Aciclovir is active against most known
species in the herpesvirus family.
• In descending order of activity:
– Herpes simplex virus type I (HSV-1)
– Herpes simplex virus type II (HSV-2)
– Varicella zoster virus (VZV)
– Epstein-Barr virus (EBV)
– Cytomegalovirus (CMV) – least activity
Aciclovir - Pharmacokinetics
• Aciclovir is poorly water soluble and has poor oral bioavailability
(15–30%), hence intravenous administration is necessary if
high concentrations are required.
• When orally administered, peak plasma concentration occurs
after 1–2 hours.
• Aciclovir has a high distribution rate
• Protein binding is reported to range from 9 to 33
• The elimination half-life of aciclovir is approximately 3 hours.
• It is renally excreted, partly by glomerular filtration and partly by
tubular secretion.
• The poor oral bioavailability may also be improved by
administering valaciclovir, which has an oral bioavailability of
about 55%.
• Valaciclovir is then converted to aciclovir by esterases via
Aciclovir -Dosage forms
• Topical therapy
• Acyclovir topical cream is commonly associated
(≥1% of patients) with:
– dry or flaking skin or transient stinging/burning
sensations.
• Infrequent adverse effects include erythema or itch.
• When applied to the eye, acyclovir is commonly
associated (≥1% of patients) with transient mild
stinging.
• Infrequently (0.1–1% of patients), ophthalmic
aciclovir is associated with superficial
punctate keratitis or allergic reactions.
Aciclovir -Toxicity
• Oseltamivir (Tamiflu)
• Zanamivir (Relenza)
Amantadine, Rimantadine
• Amantadine is no longer recommended for
treatment of influenza B infection.
• The mechanism of Amantadine's antiviral
activity involves interference with a viral
protein, M2 (an ion channel), which is
required for the viral particle to become
"uncoated" once taken inside a cell by
endocytosis.
Amantadine, Rimantadine - Adverse
effects
• Amantadine has been associated with several
central nervous system (CNS) side effects, likely due to
amantadine's dopaminergic and adrenergic activity, and to a lesser
extent, its activity as an anticholinergic.
• CNS side effects include nervousness, anxiety, agitation, insomnia,
difficulty in concentrating, and exacerbations of pre-existing seizure
disorders and psychiatric symptoms in patients with schizophrenia
or Parkinson's disease.
• The usefulness of amantadine as an anti-parkinsonian drug is
somewhat limited by the need to screen patients for a history of
seizures and psychiatric symptoms.
• Rare cases of severe skin rashes such as
Stevens Johnson Syndrome and suicidal ideation in patients treated
with amantadine have also been reported
• Livedo reticularis is a possible side effect of amantadine use for
Parkinson's disease
Oseltamivir
• Antiviral drug, slows the spread of influenza (flu) virus
between cells in the body by stopping the virus from
chemically cutting ties with its host cell
• Median time to symptom alleviation is reduced by 0.5–1
day.
• The drug is marketed under the trade name Tamiflu,
and is taken orally in capsules or as a suspension.
• It has been used to treat and prevent influenza A virus
and influenza B virus infection in over 50 million people
since 1999
• Oseltamivir is a prodrug, a (relatively) inactive chemical
which is converted into its active form by metabolic
process after it is taken into the body.
Oseltamivir - Mechanism of action