Uploads by Lokosoo

Wanzhong He, Pamela Cowin and David L. Stokes- Untangling Desmosomal Knots with Electron Tomography

Kenneth C. Millett- Knots, Slipknots, and Ephemeral Knots in Random Walks and Equilateral Polygons

Xia Hua and Mariel Vazquez- Modelling State Transitions in Knot Space Motivated by Type II Topoisomerase Action

Wenjing Zheng, Christine Galloy, Bernard Hallet and Mariel Vazquez- The Tangle Model for Site-specific Recombination

T. Blackstone, P. McGuirk, C. Laing, M. Vazquez, J. Roca and J. Arsuaga- The Role of Writhe in DNA Condensation

Dorothy Buck and Cynthia Verjovsky Marcotte- Classification of Tangle Solutions for Integrases, a Protein Family that Changes DNA Topology

Isabel K Darcy et al- Coloring the Mu transpososome

Mariel Vazquez, Sean D. Colloms and De Witt Sumners- Tangle Analysis of Xer Recombination Reveals only Three Solutions, all Consistent with a Single Threedimensional Topological Pathway

Soojeong Kim- A 4-string tangle analysis of DNA-protein complexes based on difference topology

Isabel K. Darcy, John Luecke and Mariel Vazquez- Tangle Analysis of Difference Topology Experiments

Junalyn Navarra-Madsen- A Topological Model of a “Jumping Gene” Machine

Robert Planque- The role of knot theory in DNA research

Helen Farrell- Knots

Louis H. Kauffman and Sofia Lambropoulou- Hard Unknots and Collapsing Tangles

Xia Hua, Diana Nguyen, Barath Raghavan, Javier Arsuaga and Mariel Vazquez- Random state transitions of knots

Sonia Trigueros and Joaquim Roca- Production of highly knotted DNA by means of cosmid circularization inside phage capsids

Stefan Wallin, Konstantin B Zeldovich, and Eugene I Shakhnovich- The folding mechanics of a knotted protein

Zoya M. Petrushenko, Chien-Hung Lai, Rachna Rai, and Valentin V. Rybenkov- DNA Reshaping by MukB

Dorothy Buck and Mauro Mauricio- Tangle Solutions for Composite Knots

Isabel Darcy, John Luecke and Mariel Vazquez- Mu Transpososome

Dorothy Buck and Erica Flapan- A Model of DNA Knotting and Linking

Sergio Ardanza Trevijano- Excursiones matemáticas en biología

Angel Ferrandez, Maria A. Hernandez Cifre y Jose A. Pastor- Algunos aspectos matematicos de la doble estructura helicoidal del adn

Kenny Hunt and Eric Lunde- Interactive Scientific Visualization of Polygonal Knots

J. C. Gomez Larranaga and H. Cabrera Ibarra- Nudos en Biologia

Mousa Rebouh- Topological Analysis of a Site-Specific Recombination Reaction

Javier Arsuaga, Mariel Vazquez, Sonia Trigueros, De Witt Sumners and Joaquim Roca- Knotting probability of DNA molecules confined in restricted volumes

Steven A. Wasserman and Nicholas R. Cozzarelli- Determination of the stereostructure of the product of Tn3 resolvase by a general method

Steven A. Wasserman and Nicholas R. Cozzarelli- Supercoiled DNA-directed Knotting by T4 Topoisomerase

Karen A. Heichman, Ivan P.G. Moskowitz and Reid C. Johnson- Configuration of DNA strands and mechanism of strand exchange in the Hin invertasome as revealed by analysis of recombinant knots

James H. White, K.C. Millett and Nicholas R. Cozzarelli- Description of the Topological Entanglement of DNA Catenanes and Knots by a Powerful Method Involving Strand Passage and Recombination

Isabel K. Darcy- Biological Distances on DNA Knots and Links

Isabel K Darcy, John Luecke and Mariel Vazquez- Tangle analysis of difference topology experiments

Todd O. Yeates, Todd S. Norcross and Neil P. King- Knotted and topologically complex proteins as models for studying folding and stability

Dorothy Buck and Cynthia Verjovsky Marcotte- Tangle Solutions for a Family of DNA-Rearranging Proteins

James H. White and Nicholas R. Cozzarelli- A simple topological method for describing stereoisomers of DNA catenanes and knots

Anna L. Mallam, Shimobi C. Onuoha, J. Gunter Grossmann and Sophie E. Jackson- Knotted Fusion Proteins Reveal Unexpected Possibilities in Protein Folding

Quan Du, Alexei Livshits, Agnieszka Kwiatek, Makkuni Jayaram and Alexander Vologodskii- Protein-induced Local DNA Bends Regulate Global Topology of Recombination Products

Dorothy Buck and Cynthia Verjovsky Marcotte- Classification of Tangle Solutions for Integrases, A Protein Family that Changes DNA Topology

Patrick Plunkett, Michael Piatek, Akos Dobay, John C. Kern, Kenneth C. Millett, Andrzej Stasiak and Eric J. Rawdon- Total Curvature and Total Torsion of Knotted Polymers

J. Arsuaga, T. Blackstone, Y. Diao, K. Hinson, E. Karadayi and M. Saito- Sampling Large Random Knots in a Confined Space

Dorothy Buck and Erica Flapan- A Topological Characterization of Knots and Links Arising from Site-Specific Recombination

Mariel Vazquez- Analyzing DNA topology with Mathematical and Computational Methods

Roland van der Veen- Knots, Continued Fractions and DNA

Stanley Y. Shaw and James C. Wang- Chirality of DNA trefoils

Xiaoyan Robert Bao- Lost in a Crowd

Bojan Durickovic- Elastic helices

M. E. Cates and J. M. Deutsch- Conjectures on the statistics of ring polymers

Edward N. Trifonov and Igor N. Berezovsky- Evolutionary Aspects of Protein Structure and Folding