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Basic Structure of Nucleic Acids

Acid

5 4

Base

1 Adenine

Monophosphate Diphosphate Triphosphate


3

Sugar

Purine Guanine Thymine Pyrimidine Cytosine 2 Uracil


Juang RH (2004) BCbasics

Nucleotide (Adenosine monophosphate, AMP

Nucleoside (Adenosine)

Ribose, Deoxyribose

Nucleotides Linked by Phosphodiester Bond


2 -

PO4

1
3
O O-P=O O OH
2 -

PO4

2
3 OH

Phosphodiester bond

5 P 1 R P 2 R P 3 R P 4 R P 5 R P 6 R 3

Juang RH (2004) BCbasics

A kind of phospho-polysaccharides

The Notation for Nucleic Acids


A T C G A T C G

5
P OH

B R P 5

1 2 3

pApTpCpGpApTpCpG-OH 3
5 pATCGATCG-OH 3

ATCGATCG
Juang RH (2004) BCbasics

The Two Chains of DNA Are Antiparallel

5 5

pApTpCpGpApTpCpG-OH 3
5
5
Juang RH (2004) BCbasics

pCpGpApTpCpGpApT-OH 3
3

Characteristics of Double Helix

5
1 2 3 4 5

36

Small groove

6 7 8 9 10

Large groove

1 Twist = 10.5 bp

3
Juang RH (2004) BCbasics

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