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Confocal Microscope
— the ultimate confocal microscope
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Capturing high-quality images of cells and molecular events at high speed,
Nikon’s superior A1 confocal laser microscope series, with ground breaking technology,
enables you to bring your imaging aspirations to life.
A1 with high performance and A1R with additional high-speed resonant scanner
The new A1 series dramatically improves confocal performance and ease of operation. The A1R with a hybrid
scanner supports advanced research methods using photo activation fluorescence protein. The new ergonomic
user-friendly design facilitates live-cell work and a huge array of new imaging strategies.
Dynamics
A high-speed resonant scanner allows imaging of intracellular dynamics at 30 frames per
second (fps). Moreover, image acquisition of 230 fps is possible.
Interaction
Simultaneous imaging and photo activation with the proprietary hybrid scanner reveal
intermolecular interaction. Analysis software for FRAP and FRET is provided as standard.
Spectrum
Fast spectral image acquisition for 32 channels at a maximum of 16 fps is possible. New real-
time spectral unmixing and the V-filtering functions expand the range of use of spectral images.
Image Quality
Fluorescence efficiency is increased by 30 percent, and S/N ratio of images is also increased.
With diverse new technologies such as the VAAS pinhole unit, superior image quality has been
achieved.
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Dynamics & Interaction
A1R’s hybrid scanner for ultrahigh-speed imaging and photo activation
A1R incorporates two independent galvano scanning systems: high-speed resonant and high-resolution
non-resonant. This allows ultrafast imaging and photo activation imaging required to unveil cell
dynamics and interaction.
World’s fastest 230 fps (512 x 64 pixels) Optical output ports Continuous variable hexagonal pinhole (page 12)
A resonant scanner with ultrahigh resonance frequency of A detector port for the 4-PMT
7.8kHz is simultaneously mounted with a non-resonant detector, spectral detector port
scanner that is capable of high-resolution (4096 x 4096 pixels) and optional detector port is
image capture. incorporated. Resonant scanner
1D scanning 15,600 lps Resonant scanner Non-resonant scanner For high-speed imaging of 230 fps.
2D scanning 230 fps (512 x 64 pixels)
During photo activation imaging, it is
used for image capture.
Full frame scanning 30 fps (512 x 512 pixels)
Simultaneous photo activation and fluorescence imaging is conducted using non-resonant and resonant scanners.
ch:1
Because the resonant scanner can capture images at 30 fps, image acquisition of high-speed biological processes 4000
Photo activation laser
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after photo activation is possible.
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Hyper selector
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Frame Line
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HeLa cells expressing PA-GFP are excited with 488nm laser light. Directly after photo-activation (using 405nm laser light) of a region of interest, green emission (shown in grayscale) by photo- 3000
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activated PA-GFP is detected and the subsequent distribution of the photo-activated protein is recorded at high speed. Please note that photo-activation (with the 405nm laser) and image acquisition 2000
(with the 488nm laser) is performed simultaneously. Both XYt and Xt recordings are displayed. Graphs show fluorescence intensity (vertical) versus time (horizontal). 1000
Activation laser wavelength: 405nm, Imaging laser wavelength: 488nm 0/4000
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Photos courtesy of: Dr. Tomoki Matsuda and Prof. Takeharu Nagai, Research Institute for Electronic Science, Hokkaido UniversityProf.
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Kaede photo conversion fluorescence protein 3000
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Kaede changes fluorescence colors irreversibly from green to red due to fluorescence spectral conversion when it is exposed to light with 0/4000
The graph indicates the changes of
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a spectrum from ultraviolet to violet. 2000 fluorescence intensity in each ROI.
1000 The blue line indicates the changes of
2000 0 fluorescence intensity of the CFP
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variant and the red line indicates the
Frame changes of fluorescence intensity of
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the PA-GFP variant.
1000 While imaging a HeLa cell expressing photo conversion protein with blue and green fluorescence using 457nm laser as excitation light, the PA-GFP variant in an ROI
is continuously activated with the 405nm laser. The activated part observed in blue fluorescence (shown in monochrome in the images) emits green fluorescence
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(shown in red in the images). And the dispersion of photo conversion protein indicated by this green (shown in red in the images) is observed.
Activation laser wavelength: 405nm, Imaging laser wavelength: 457nm, Image size: 512 x 512 pixels, 1 fps
Photos courtesy of: Dr. Tomoki Matsuda and Prof. Takeharu Nagai, Research Institute for Electronic Science, Hokkaido University
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While imaging a HeLa cell expressing Kaede with green and red fluorescence using 488nm and 561nm lasers as excitation lights, Kaede in a ROI is continuously 2 4 6 8
Frame
activated with the 405nm laser for photo conversion. The dispersion of Kaede red fluorescence produced by photo conversion is observed. The horizontal axes of
two graphs indicate time and the vertical axes indicate fluorescence intensity (pixel intensity). The green line and red line in the graph respectively indicate
intensity change of Kaede green and red fluorescence in the ROI.
Activation laser wavelength: 405nm, Imaging laser wavelength: 488nm/561nm, Image size: 512 x 512 pixels, 1 fps
Four-color imaging
Photos courtesy of: Dr. Tomoki Matsuda and Prof. Takeharu Nagai, Research Institute for Electronic Science, Hokkaido University
FRET is a physical phenomenon that occurs when there are at least two fluorescent molecules within a range of approximately 10nm. When the
emission spectrum of a fluorescent molecule overlaps with the absorption spectrum of another fluorescent molecule and the electric dipole directions
of the two molecules correspond, radiationless energy transfer from a donor molecule to an acceptor molecule may occur.
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HeLa cells expressing Yellow Cameleon 3.60 were excited with 457nm laser light. After stimulation with histamine, calcium ion concentration dynamics were 500
observed. The (blue) emission of CFP and the (yellow) emission of YFP are shown as green and red channels respectively. The graph displays fluorescence Image of a zebra fish labeled with four probes
intensity (vertical) versus time (horizontal). The green and red lines in the graph indicate the intensity change of CFP emission (green) and YFP emission (red) Nucleus (blue): Hoechst33342, Pupil (green): GFP, Nerve (yellow): Alexa555, Muscle (red): Alexa647
from the region of interest (ROI). Along with the increase of calcium ion concentration in the cell, the intermolecular FRET efficiency between CFP and YFP within 0 Photographed with the cooperation of: Dr. Kazuki Horikawa and Prof. Takeharu Nagai,
Yellow Cameleon 3.60 increases, the CFP fluorescence intensity decreases, and the YFP fluorescence intensity increases. 10 20 30 40 50 60 Research Institute for Electronic Science, Hokkaido University
8 Imaging laser wavelength: 457nm, Image size: 512 x 512 pixels, 30 fps Frame 9
Photos courtesy of: Dr. Kenta Saito and Prof. Takeharu Nagai, Research Institute for Electronic Science, Hokkaido University
Spectrum
Enhanced spectral detector
Nikon’s original spectral performance is even further enhanced in the A1 series, allowing high-speed spectral
acquisition with a single scan. In addition, new functions including a V-filtering function are incorporated.
Optical fiber
The wavelength resolution is
Fast 32-channel imaging at 16 fps DEES system independent of pinhole diameter.
High diffraction efficiency is achieved by
New signal processing technology and high-speed AD conversion circuit allow acquisition of a 32-channel matching the polarization direction of
Unpolarized light
spectral image (512 x 512 pixels) in 0.5 second. Moreover, acquisition of 512 x 64 pixels images at 16 frames light entering a grating to the polarizing
per second is realized. Polarized beam splitter
light beam S.
S2
Polarization rotator P S1
S2
Nikon’s original algorithms and high-speed data processing enable fast and accurate unmixing during image
acquisition in less than a second. Coupled with high-speed spectral imaging, an image with no crosstalk can
be created in real time.
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32-channel detector
0.25
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The intensity of each wavelength 1 4 7 10 13 16 19 22 25 28 31 1 4 7 10 13 16 19 22 25 28 31
400 Wavelength (nm) 750 (Channel) (Channel)
range is adjustable.
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Image Quality
Key Nikon innovations for improving image quality
A best ever image quality is realized by an increased light sensitivity resulting from comprehensive technological
innovations in electronics, optics and software.
Low-angle incidence dichroic mirror realizes 30% increase in fluorescence efficiency VAAS pinhole unit transcends the existing concept of a confocal microscope
With the A1series, the industry’s first low-angle incidence method is employed on dichroic mirrors. It is commonly known that reducing pinhole size to eliminate flare light from non-focal plane causes darker images.
High transmission rate of an average 98% and a 30% increase of fluorescence efficiency are realized. The VAAS (Virtual Adaptable Aperture System) provides a new confocal microscopy that can eliminate flare while
retaining image brightness.
Low-angle incidence method
Increased fluorescence efficiency
45º incidence angle method
100 Principle and features
Conventional 45º Low-angle
incidence angle method incidence method 90
80 Conventional confocal microscope VAAS pinhole unit
Transmission rate (%)
DISP
Integrator (1)
Integrator (2)
Pixel time
Integration Hold Reset
Two integrators work in parallel as the optical signal is read to ensure there are no gaps. Photographed with the cooperation of: Dr. Yasushi Okada, Cell Biology, Medical Dept. of Graduate School, Tokyo University
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Easy to Use
Increased flexibility and ease of use
Control software NIS-Elements C features easy operation and diverse analysis functions. Combined with a
remote controller and other hardware, it provides a comprehensive operational environment.
Superior operability based on analysis of every possible confocal microscope operation pattern realizes easy operation without In combination with four lasers, simultaneous observation of four
an instruction manual, satisfying both beginners and experienced confocal users. Taking advantage of the hybrid scanner, it fluorescence labels is possible as standard. Each of three filter wheels
enables a complicated sequence of experiments such as photo activation to be carried out with simple setting and operation. can mount six filter cubes that are commonly used for a microscope, and
are all easily changeable by users. This combines modularity, flexibility
with user friendliness.
Simple image acquisition
・ Basic operation ・ Optical setting
Parameters for basic image acquisition are integrated in a single By simply selecting a fluorescence probe, an appropriate filter and laser
window, allowing simple image acquisition. wavelength are set automatically. Microscope setup is also conducted
automatically.
During lengthy time-lapse imaging, cellular apoptosis caused by the exposure to light is a problem. The CLEM senses
the fluorescence signals and controls the on/off of the laser exposure depending on signal intensity. This reduces laser
exposure and alleviates the problem of cellular apoptosis.
Non-CLEM: Apoptosis occurs after a lapse of one hour
Reliable analysis functions
Real-time ratio display
Deconvolution
10 µm
High-speed 3D rendering
0 min 27 min 96 min 169 min
Multidimensional image display (nD Viewer)
Synchronized display of multidimensional images (View CLEM: Apoptosis doesn’t occur even after a lapse of 2.5 hours
synchronizer) Expression GFP in Histone 2B of HeLa cell
Diverse measurement and statistical processing Excitation laser wavelength: 488nm, Fluorescence acquisition
wavelength: 500-530nm, Single image acquisition time: 4
Powerful image database function seconds, Intervals: 1 minute, Total acquisition time: 3 hours
Colocalization and FRET Photos courtesy of: Dr. Merel Adjobo-Hermans, Department of Cell Biology,
0 min 27 min 96 min 169 min Amsterdam University, The Netherlands
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System components Recommended objective lenses
CFI Plan Apochromat 10x NA 0.45, W.D. 4.0mm
CFI Plan Apochromat 20xVC NA 0.75, W.D. 1.0mm NEW
Laser unit Detector unit Filter Cubes CFI Plan Apochromat 40xC NA 0.95, W.D.0. 14mm
LU-LR 4-laser CFI Plan Apochromat VC 60xWI NA 1.20, W.D. 0.27mm
Power Source Rack
CFI Apochromat TIRF 60x NA 1.49, W.D. 0.13mm
CFI Apochromat TIRF 100x NA 1.49, W.D. 0.12mm
CFI Plan Fluor 10x NA 0.30, W.D. 16.0mm
AOM
Filter Wheel
Unit A1 Scanning Head 4-detector Unit CFI Plan Fluor 20x NA 0.50, W.D. 2.1mm
for VAAS
CFI Plan Fluor 40x NA 0.75, W.D. 0.66mm
CFI S Fluor 10x NA 0.50, W.D. 1.2mm
Filter Cubes
Option CFI S Fluor 20x NA 0.75, W.D. 1.0mm
CFI S Fluor 40x NA 0.90, W.D. 0.3mm
A1-DUS Spectral Detector Unit A1-DU4 4-detector Unit CFI S Fluor 40x Oil NA 1.30, W.D. 0.22mm
CFI S Fluor 100x Oil with Iris diaphragm NA 0.5-1.30, W.D. 0.20mm
L4 L3 L2 L1
A1R Scanning Head Spectral Detector Unit Recommended filters
Excitation laser Channel 1 Channel 2 Channel 3 Channel 4
405/488/561/638 450/50 525/50 595/50 700/75
C-LU3EX 3-laser Unit EX LU4 4-laser Unit
405/488/543/638 450/50 515/30 585/65 700/75
457/514 482/35 540/30 — —
For filters other than the above, please consult your local Nikon representative.
A1R scanner set/A1 standard scanner set 4-laser Unit Diascopic Detector Unit
Controller
Scanning Head
Remote Controller
Either A1 standard scanner set or A1R scanner set can be chosen. 4-laser Power Source Rack
A1-TI Ti Adapter Set A1-TE TE Adapter Set A1-FN1 FN1 Adapter Set A1-90I 90i Adapter Set
3-laser Unit EX
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Specifications
Diverse peripherals and systems for pursuit of live cell imaging A1R A1
Input/output port Laser input port: 3 (FC x2, direct x1)
Signal output port: 4 (SMA x2, FC x1, VAAS x1)
CFI Plan Apochromat VC series objectives Laser Wavelength and power 405LD: max. 38mW, Multi-Ar (457/488/514): max. 65mW, 488DPSS: max. 75mW, 561DPSS: max. 25mW, 543HeNe: max.
The VC lens corrects aberrations up to the viewfield periphery 1mW, 638LD: max. 10mW
and eliminates shading, providing uniform high resolution 440LD: max. 15mW (available as option)
throughout the viewfield. Axial chromatic aberration is corrected
up to 405nm (h line), making this series perfect for confocal Modulation Method: AO (Acousto) device or drive current control
observations and photo activation with a semiconductor laser. Control: power control for each wavelength, Return mask, ROI exposure control
The frequently used 20x objective has been added recently to this Laser unit Standard: LU4 4-laser unit
series.
Optional: C-LU3EX 3-laser unit EX
Standard fluorescence detector Wavelength 485-650nm
Detector 4 PMT
Filter cube 6 filter cubes commonly used for a microscope mountable on each of three filter wheels
Recommended wavelengths: 450/50, 482/35, 525/25, 595/50, 700/75, 540/30, 515/30, 585/65
Diascopic detector Wavelength 440-700nm
CFI Plan Apo VC 100x Oil, NA 1.40
CFI Plan Apo VC 60x Oil, NA 1.40 Detector PMT
CFI Plan Apo VC 60x WI, NA 1.20
CFI Plan Apo VC 20x, NA 0.75 (NEW)
Scanning head Scanning Scanning range: square inscribed in a ø18mm circle
Standard image acquisition Standard image acquisition
Scanner: non-resonant scanner x2 Scanner: non-resonant scanner x2
Confocal microscope with Perfect Focus System Multi-mode imaging system—A1 with TIRF system Pixel size: max. 4096 x 4096 pixels Pixel size: max. 4096 x 4096 pixels
With the inverted microscopes Ti-E and TE2000, an automatic focus The laser TIRF system and the confocal microscope system A1 series can be Scanning speed: 4 fps (512 x 512 pixels) Scanning speed: 4 fps (512 x 512 pixels)
maintenance mechanism—Perfect Focus System (PFS) can be used. It mounted simultaneously on the inverted microscope Ti-E or TE2000-PFS. Zoom: 1-1000x continuously variable Zoom: 1-1000x continuously variable
continuously corrects focus drift during long time-lapse observation and The laser TIRF system incorporates an epi-fluorescence module. Switching Scanning mode: X-Y, XY rotation, Free line, Line Z Scanning mode: X-Y, XY rotation, Free line, Line Z
when adding reagents. and adjustment of alignment is easy between the two light sources. High-speed image acquisition
By combining the observations of single molecules with laser TIRF and the
Scanner: resonant scanner (X-axis, resonance frequency 7.8kHz),
sectioning capabilities of the A1, this system
allows for multi-perspective cellular analysis. non-resonant scanner (Y-axis)
Pixel size: max. 512 x 512 pixels
Concept of the Perfect Focus System Scanning speed: 30 fps (512 x 512 pixels) to 230 fps
(512 x 64 pixels),
Specimen 15,600 lines/sec (line speed)
Interface Zoom: 7 steps (1x, 1.5x, 2x, 3x, 4x, 6x, 8x)
Coverslip Motorized PFS nosepiece CFI Apochromat TIRF 60x Oil, NA 1.49 (left) Scanning mode: X-Y, Line
CFI Apochromat TIRF 100x Oil, NA 1.49 (right)
Oil, water (inverted microscope Ti-E) Acquisition method: Standard image acquisition,
Objective
Perfect Focus Nosepiece High-speed image acquisition, Simultaneous photo activation
LED and image acquisition
Near-IR light
Line-CCD Dichroic mirror Low-angle incidence method
Position: 8
Offset lens
Observation
Standard filter: 405/488, 405/488/561, 405/488/561/638, 405/488/543/638, 457/514, BS20/80
light path Pinhole 12-256µm variable (1st image plane)
Camera
Spectral detector Number of channels 32 channels
The diagram shows the case when an immersion type objective is used.
A dry type objective is also available.
Spectral image 4 fps (256 x 256 pixels), 1000 lps
acquisition speed
Maximum wavelength 80nm (2.5nm), 192nm (6nm), 320nm (10nm)
Motorized stages Stage incubation system INU series and resolution Wavelength range variable in 0.25nm steps
Motorized stage makes multipoint observation easy. It allows multipoint Temperature of the stage, water bath, cover, and objective lens is
XYt (4D), multipoint XYZ (4D), multipoint XYZt (5D) and multipoint XYZtλ controlled, allowing living cells to be maintained for a long period. A Unmixing High-speed unmixing, Precision unmixing
(6D, including spectral information) observations. By using the standard transparent glass heater prevents condensation, and focus drift due to heat Z step 0.025µm
motorized stage or motorized XY stage equipped with a linear encoder with expansion on the stage surface is prevented, making this system ideal for
Compatible microscopes ECLIPSE Ti-E inverted microscope,
enhanced positioning repeatability in combination with the optional lengthy time-lapse imaging applications.
motorized piezo Z stage with high-speed Z-direction scanning capability, Manufactured by Tokai Hit Co., Ltd. ECLIPSE TE2000-E inverted microscope,
high-speed line Z scans are possible. ECLIPSE 90i upright microscope,
ECLIPSE FN1 fixed stage microscope
Option Motorized XY stage, High-speed Z stage, VAAS, CLEM
Software Display/image generation 2D analysis, 3D volume rendering/orthogonal, 4D analysis, spectral unmixing
Image format JP2, JPG, TIFF, BMP, GIF, PNG, ND2, JFF, JTF, AVI, ICS/IDS
Application FRAP, FLIP, FRET, photo activation, three-dimensional time-lapse imaging, multipoint time-lapse imaging, colocalization
Control computer OS Microsoft Windows® XP 32bit SP (English version)
CPU Intel Xeon 5160 (3GHz/1333MHz/dual core) or higher
Standard motorized XY stage Memory 4GB or more
Hard disk SAS (15,000rpm), 160GB or more x2, RAID 0 configuration
Data transfer Dedicated data transfer I/F
Monitor 1600 x 1200 or higher resolution, 2 LCD monitor configuration recommended
Motorized Piezo Z stage
Installation condition Temperature 5 to 35°C, humidity 65% (RH) or less (non-condensing)
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Layout Unit: mm
4-detector Unit
4-laser Unit
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EMISSION POWER
○
LU4 4-laser unit 438(W) x 301(H) x 690(D)mm Approx. 35kg (without laser)
LU-LR 4-laser power source rack 438(W) x 400(H) x 800(D)mm Approx. 20kg (without laser power source)
Scanning head 276(W) x 163(H) x 364(D)mm Approx. 13kg
Power source
Specifications and equipment are subject to change without any notice or obligation
on the part of the manufacturer. February 2008 ©2008 NIKON CORPORATION
TO ENSURE CORRECT USAGE, READ THE CORRESPONDING
WARNING MANUALS CAREFULLY BEFORE USING YOUR EQUIPMENT.
* Monitor images are simulated.
Company names and product names appearing in this brochure are their registered trademarks or trademarks.
NIKON CORPORATION
6-3, Nishiohi 1-chome, Shinagawa-ku, Tokyo 140-8601, Japan
phone: +81-3-3773-8973 fax: +81-3-3773-8986
http://www.nikon-instruments.jp/eng/