This document discusses key concepts in phylogenetic taxonomy and cladistics. It explains that only shared derived characteristics provide information about genealogical relationships within a clade. Features that evolved before a clade split do not carry information about internal relationships. The document uses marsupials as an example, noting that traits like pouches and dentition evolved within the mammal clade and can inform relationships there. For instance, wombats have posteriorly-facing pouches, supporting their proximity to other wombat species. Cladists rely on shared derived traits and assume convergence is rarer than non-change, taking phylogenies requiring fewer character changes to be more accurate.
This document discusses key concepts in phylogenetic taxonomy and cladistics. It explains that only shared derived characteristics provide information about genealogical relationships within a clade. Features that evolved before a clade split do not carry information about internal relationships. The document uses marsupials as an example, noting that traits like pouches and dentition evolved within the mammal clade and can inform relationships there. For instance, wombats have posteriorly-facing pouches, supporting their proximity to other wombat species. Cladists rely on shared derived traits and assume convergence is rarer than non-change, taking phylogenies requiring fewer character changes to be more accurate.
This document discusses key concepts in phylogenetic taxonomy and cladistics. It explains that only shared derived characteristics provide information about genealogical relationships within a clade. Features that evolved before a clade split do not carry information about internal relationships. The document uses marsupials as an example, noting that traits like pouches and dentition evolved within the mammal clade and can inform relationships there. For instance, wombats have posteriorly-facing pouches, supporting their proximity to other wombat species. Cladists rely on shared derived traits and assume convergence is rarer than non-change, taking phylogenies requiring fewer character changes to be more accurate.
lowed him, the only characters that matter in identifying genealogical
relationships are shared derived characteristics. Marsupials, for exam- ple, have many of their similarities not in virtue of being marsupials but in virtue of their membership of the larger clade of the mammals: most obviously their fur and the capacity of females to lactate. These are inheritances derived from a deeper ancestor than the Mother-of-all- Marsupials. Hence they tell us nothing about relationships within the mammal clade; a character trait that evolves before a clade splits from its ancestral stock cannot carry information about relationships within that clade (though subsequently evolving modifications might do so). This is a conceptual point; it does not depend on controversial claims about evolutionary mechanisms. We illustrate it with a few antipodean examples. The marsupials’ pouch, together with various aspects of their dentition and physiology, are inheritances from the Marsupial Mother, and hence those traits are informative about relationships within the mammal clade. They are shared and derived. They evolved within the mammal clade (they are derived) and they are shared across the spe- cies descending from their point of origin in the mammal tree (hence they are shared). Marsupials’ pouches mostly open toward the front of the animal. Thus when a female kangaroo is at rest, the pouch opens upward, and her joey is in no danger of falling out. But not all marsu- pials have front-opening pouches. The opening of a wombat’s pouch is posterior rather than anterior (otherwise it would tend to fill with dirt as the wombat burrowed into the earth). This character is shared and derived within the marsupials, and hence is evidence supporting the genealogical proximity of the common wombat and the southern and northern hairy-nose wombats. The pointy ears of the two hairy- nosed species is a derived character that supports their status as sister taxa, more closed related to each other than either is to the common wombat. Unlike evolutionary taxonomists, cladists did not expect shared derived similarities between organisms to have special embryological or ecological markers. Instead, they proposed to rely on the idea that similarities due to convergent and parallel evolution would be rare compared to similarities due to inheritance. Change is rare compared to nonchange. This is an empirical but relatively uncontroversial claim about evolutionary processes. On the basis of these assumptions, cla- dists take it that phylogenetic hypotheses that minimize the number of changes needed to account for observed patterns of similarity and dif- ference have the best chance of being right. This method of detecting phylogeny is known as parsimony analysis.8 A phylogenetic hypothesis that minimizes the number of character state changes among (say) the