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OPINION Genetic origins of low birth weight
Hanieh Yaghootkar a and Rachel M. Freathy a,b
Purpose of review
Smaller size at birth is associated with a higher risk of type 2 diabetes in later life, but the mechanisms
behind this association are poorly understood. Genetic variants which influence susceptibility to type 2
diabetes via effects on insulin secretion or action are good candidates for association with birth weight
because foetal insulin is a key foetal growth factor. This review will focus on recent progress in identifying
associations between common genetic variants and birth weight.
Recent findings
Foetal genetic variants at two loci (near CCNL1 and in ADCY5) were robustly associated with birth weight
via the foetal genotype in the first genome-wide association study of birth weight. The birth weight-lowering
allele at ADCY5 also predisposes to type 2 diabetes. In addition, evidence from studies of other type 2
diabetes loci is accumulating for association between the foetal risk alleles at CDKAL1 and HHEX-IDE and
lower birth weight, and the maternal risk alleles at GCK and TCF7L2 and higher birth weight.
Summary
The associations with birth weight at ADCY5, CDKAL1 and HHEX-IDE support the foetal insulin hypothesis,
which proposed that type 2 diabetes and lower birth weight could be two phenotypes of the same
genotype. The associations at GCK and TCF7L2 illustrate that maternal genes are also important
determinants of birth weight.
Keywords
birth weight, genome-wide association, single nucleotide polymorphism, type 2 diabetes
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Genetic origins of low birth weight Yaghootkar and Freathy
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Paediatrics
an effect size similar to that of the FTO locus on BMI candidate gene studies that foetal variants in the
[14]. Effect size estimates of the associations CDKAL1 gene and near the HHEX and IDE genes are
between rs900400 and head circumference or birth also associated with birth weight. Several groups of
length were comparatively much smaller, sug- investigators have performed large genetic associ-
gesting this locus influences soft tissue, rather than ation studies of birth weight using risk variants
skeletal, mass. An independent follow-up study by discovered in GWA studies of type 2 diabetes
& &
Ryckman et al. [15 ] showed that the same SNP was ([17 ,21–23] Table 1). These are considered good
associated with birth weight in a study of preterm candidates for association with birth weight due
neonates, thus demonstrating a clear influence on to their potential effects on insulin secretion or
birth weight irrespective of gestational age. In action. Evidence of association between the type 2
another follow-up study of repeated foetal ultra- diabetes risk alleles at CDKAL1 or HHEX-IDE and
&
sound examinations, Mook-Kanamori et al. [16 ] lower birth weight has been reported in a number of
&
found evidence of association between rs900400 independent studies [17 ,21,24–26], with the larg-
and foetal growth measures from the second trimes- est and most recent meta-analyses showing associ-
ter onward, demonstrating its effects on growth ations of 20 g (95% CI: 29 to 11 g) (P ¼ 5 10 –6)
from early in pregnancy. Despite the very strong and -16 g (95% CI: 24 to 8 g) (P ¼ 8 10 –5) per risk
&
evidence of association with birth weight, the allele, respectively [17 ]. As with the association at
CCNL1 and LEKR1 genes have no known link with ADCY5, these associations between lower birth
foetal growth, and the biological mechanism has yet weight and type 2 diabetes risk alleles support the
to be elucidated. foetal insulin hypothesis [7]. Both the CDKAL1 and
The second cluster of SNPs to be robustly associ- HHEX-IDE have been associated with reduced
ated with birth weight centred on the ADCY5 gene pancreatic b-cell function and reduced insulin
& &
[13 ,17 ]. Each additional foetal C-allele at SNP secretion in studies of nondiabetic adults [27,28].
rs9883204 is associated with a lower birth weight Further studies will be needed to confirm their
by approximately 30 g (95% CI: 23–38 g) associations with birth weight at genome-wide sig-
(P ¼ 7 10 –15 [13 ]). Importantly, this SNP is in link-
&
nificance and to determine whether they influence
age disequilibrium with SNP rs11708067 (r2 ¼ 0.75), foetal insulin secretion.
which was previously shown to predispose to type 2
diabetes (P ¼ 1 10 –20 [18]). The C-allele of
rs9883204 is associated both with lower birth weight NOT ALL TYPE 2 DIABETES LOCI ARE
and an increased risk of type 2 diabetes. Therefore, ASSOCIATED WITH BIRTH WEIGHT
genetic variation at ADCY5 must explain part of the It is clear that association with birth weight is not a
observed correlation between lower birth weight characteristic of all type 2 diabetes loci (Table 1).
and type 2 diabetes, which supports the foetal insu- Genetic studies of birth weight can, therefore, give
lin hypothesis [7]. It is not known how genetic clues as to whether a defect in b-cell function exists
variation at ADCY5 alters foetal growth or risk of early in development or appears later in life. For
type 2 diabetes. Robust associations (P < 5 10 –8) example, TCF7L2, which confers the largest risk of
have been demonstrated between the type 2 dia- type 2 diabetes in Europeans and strongly influences
betes risk allele and higher fasting glucose levels b-cell function and insulin secretion in adulthood,
[18], higher 2-h glucose during an oral glucose has been studied extensively in relation to birth
tolerance test [19] and lower Homeostatic Model weight and shows no association via the foetal
&
Assessment (HOMA)-derived index of beta-cell func- genotype [17 ,22,24,26,29]. This suggests that, in
tion (HOMA-B) [18] in adults, in addition to a strong contrast to the likely effects of ADCY5, CDKAL1
association (P ¼ 1 10 –6) with lower 2-h serum insu- and HHEX-IDE, any b-cell defect conferred by
lin levels, adjusted for 2-h plasma glucose levels [19]. TCF7L2 is not present in foetal life.
Together, these suggest a role in insulin secretion,
though it is unlikely that the locus is directly
involved in early insulin response to a glucose GENETIC LOCI ASSOCIATED WITH ADULT
challenge (P > 0.1 for insulinogenic index [19,20]). BMI DO NOT INFLUENCE BIRTH WEIGHT
Further studies will be needed to determine whether High birth weight is correlated with high BMI in
the ADCY5 locus influences birth weight by affect- adulthood [30]. To investigate whether common
ing foetal insulin secretion in utero. genetic variants are associated with body weight
No common genetic variants apart from those at in both foetal and adult life, two recent studies
the CCNL1 and ADCY5 loci have been associated tested associations with birth weight of loci known
with birth weight at genome-wide levels of signifi- to influence adult BMI and measures of adiposity.
cance. However, evidence is accumulating from Between 12 and 24 loci were tested in sample sizes
Copyright © Lippincott Williams & Wilkins. Unauthorized reproduction of this article is prohibited.
Table 1. Published associations between birth weight and common foetal genetic variants (primarily associated either with birth weight or type 2
diabetes in genome-wide association studies at P < 5 108), analysed in at least 10 000 individuals
Changec in birth Change in birth weight
weight per foetal per foetal risk allele in n in analysis
Known Total n in largest risk allele in grams grams, adjusted for adjusted for Source(s)
a
Gene(s) marking associated Risk Nonrisk reported (95% confidence maternal genotype maternal of data
association signal SNP(s) adult trait(s) allele allele meta-analysisb interval) P-value (95% confidence interval) genotype (references)
&
CCNL1 rs900400 – C T 37 745 42 (48 to 35) 2 1035 55 (72 to 39) 7659 [13 ]
15 &
ADCY5 rs9883204 T2D, FPG C T 38 214 30 (38 to 23) 7 10 43 (60 to 24) 7910 [13 ]
d 6 &
CDKAL1 rs10946398, T2D C A 24 885 20 (29 to 11) 5 10 36 (56 to 16) 5399 [17 ,21]
rs7756992,
rs7754840
&
HHEX-IDE rs1111875 T2D C T 25 164 16 (24 to 8) 8 10 – 5 29 (48 to 10) 5480 [17 ,21]
d e &
GCK rs4607517, T2D, FPG A G 10 623 21 (4–39) 0.01 18 (NA) 2102 [13 ], 23
rs1799884
&
TCF7L2 rs7903146 T2D, FPG T C 19 745 12 (3–22) 0.01 9 (9 to 31) 6044 [17 ,22]
&
CDKN2A,CDKN2B rs10811661 T2D T C 25 957 12 (2–22) 0.02 2 (27 to 23) 5493 [17 ,21]
&
MTNR1B rs10830963 T2D, FPG G C 10 623 16 (1–31) 0.04 NA NA [13 ]
&
SLC30A8 rs13266634 T2D, FPG C T 24 908 7 (2 to 15) 0.10 7 (28 to 14) 5342 [17 ,21]
&
CDC123,CAMK1D rs12779790 T2D G A 10 623 11 (5 to 27) 0.19 NA NA [13 ]
&
IGF2BP2 rs4402960 T2D T G 24 393 6 (3 to 14) 0.20 10 (31 to 10) 5507 [17 ,21]
&
GCKR rs780094 T2D, FPG C T 10 623 8 (21 to 5) 0.21 NA NA [13 ]
&
KCNQ1 rs2237892 T2D C T 10 623 12 (40 to 15) 0.37 NA NA [13 ]
NA, not available; SNP, single nucleotide polymorphism; T2D, type 2 diabetes; FPG, fasting plasma glucose.
a
The risk allele is the type 2 diabetes susceptibility allele. There are no known associations between common genetic variation at CCNL1 and traits other than birth weight, so the effect is reported for the birth weight-
lowering allele.
b & & & &
The samples meta-analysed [13 ,17 ] are not independent (83% of the individuals meta-analysed in [13 ] are also in [17 ]). Therefore, for each locus analysed in both studies (CDKAL1, HHEX-IDE, TCF7L2, SLC30A8,
www.co-clinicalnutrition.com
IGF2BP2, PPARG, KCNJ11 and JAZF1), the result with the larger sample size is presented.
c &
The effect sizes in [13 ] were reported as z-scores. To facilitate comparison, they have been converted to the equivalent effect sizes in grams by multiplying by 484, which is the median standard deviation of birth
&
weight in grams, from studies included in [13 ].
d
Different SNPs have been (meta)-analysed at the CDKAL1 and GCK loci, depending on the study. However, the SNPs within each locus are highly correlated: r2 > 0.67 at CDKAL1; r2 ¼ 1 at GCK. The risk/nonrisk
Genetic origins of low birth weight Yaghootkar and Freathy
261
alleles relate to the underlined SNPs.
e
The reported effect size in [23] compares birth weights of individuals who carried one or two risk alleles with those who did not (P > 0.05).
Copyright © Lippincott Williams & Wilkins. Unauthorized reproduction of this article is prohibited.
Paediatrics
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Genetic origins of low birth weight Yaghootkar and Freathy
References
[33,34 ]
[22,34 ]
&
&
.4
[21]
[21]
[21]
[21]
[21]
.3
Table 2. Published associations between birth weight and common maternal genetic variants, analysed in at least 5000 mother-offspring pairs
foetal genotype
n in analysis
adjusted for
>6500
6044
5480
5493
5342
5399
5507
.2
CDKAL1
HHEX-IDE
.1
weight per maternal
ADCY5
risk allele in grams,
confidence interval)
adjusted for foetal
31 (9–48)
7 (12 to 26)
16 (9 to 41)
20 (0–41)
21 (1–42)
7 (13 to 27)
b
GCK
26 (NA)
Change in birth
genotype (95%
The reported effect size in [33] compares birth weights of offspring born to mothers who carried one or two risk alleles with those born to mothers who had no risk alleles.
0
−40 −20 0 20 40
Change in birth weight per risk allele, in grams
–4
5 10
3 10
0.05
0.06
0.29
0.60
0.83
P-value
effect size (y-axis) against the birth weight effect size (x-axis).
White bars indicate associations with foetal genotype, and
shaded bars indicate associations with maternal genotype.
The underlined (ADCY5) locus is associated with birth
(95% confidence interval)
17 (1 to 35)
8 (7 to 23)
4 (11 to 19)
2 (13 to 17)
14 (28 to 0)
weight per maternal
intervals. The effect sizes for birth weight relate to the SNPs
risk allele in grams
Change in birth
G
C
C
C
C
&
T
C
C
T
T
T
T
T2D, FPG
T2D, FPG
T2D, FPG
adult trait
CONCLUSION
T2D
T2D
T2D
T2D
Known
rs4402960
IGF2BP2
CDKAL1
TCF7L2
1363-1950 ß 2012 Wolters Kluwer Health | Lippincott Williams & Wilkins www.co-clinicalnutrition.com 263
Copyright © Lippincott Williams & Wilkins. Unauthorized reproduction of this article is prohibited.
Paediatrics
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genotype [7]. However, as they explain only a small & LEKR1 and in ADCY5 and fetal growth characteristics in different trimesters.
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This study showed that the birth weight-associated variant near CCNL1 influences
type 2 diabetes correlation remains to be explained. foetal growth from early in pregnancy, as it is associated with anthropometric
It will be important to understand clearly the measures taken via foetal ultrasound from the second trimester.
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This is an important study because it meta-analyses previously published data on
strategies to prevent type 2 diabetes. associations between birth weight and foetal genotype at several type 2 diabetes
susceptibility loci. It shows that there is strong cumulative evidence of association
at the CDKAL1 and HHEX-IDE loci.
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