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Group I Dehydrogenases
NADH dehydmgenase FAD 47 Cloned, sequenced, not transmembrane
Succmate dehydrogase FAD (covalently, linked), 64,26,14.13 Cloned, sequenced, contams cytochrome bsse as one of two small
non-heme non. heine b 'anchor' subumts to which the larger catalytic subumts me bound
D-Lactate dehydrogenate FAD 65 Cloned, sequenced
t-Lactate dehydmgenase FMN 43 Induced
Py~vate oxldased FAD 60 (teiramer) Cloned, sequenced, hpld-reqmnngperipheral membrane enzyme
sn-Glyceml-3-phosphate FAD 58(d;mer) Penpberal membrane enzyme
dehydrogenase (aerobic)
D-An'unoacid dehydrogenase FAD, non-heine iron 55,45 D-Alanlne is best subslrate
Prohne oxldased FAD 130 (dlmer) Cloned, penpheral membrane enzyme
M~cellaneous
Cytochrome b~l heine b 18 Cloned, sequenced
aData from Ref 30
bHeme b denotes protoheme IX. heme d is a chlonn
cpenpberal membrane enzyme denotes a protein that is easily dislodged from the membrane and can be isolated as a water-soluble spemes
dThese are dehydrogenases and not true oxldases since they do not directly interact with 0 ,
and this group does not appear to bind to 75% right-side-out, that is, similar to the very smnlar to those obtained w~th the
CO or to O 2 onentaaon m the E coh membranO 92o cytochrome d complex The maxamal
(3) Cytochrome d (Em -- + 2 6 0 m V ) By prepanng vesicles incorporating turnover m the reconsututed system is
There are two chlonn molecules present ublquinone-8 in the bdayer and mare- over 500 e -t using ublqmnol-8 as a sub-
in the enzyme 14 The structure of cyto- taming this qumone in the reduced state strate 24 Despite the apparent functional
chrome d has recently been elucidated by using an excess of the flavoprotem equivalence, the structures of the two
(Fig 2), and it appears to be denved pyruvate oxtdase, it was shown that the oxtdases appear to be very different The
from protoheme IX by a reductwe cytochrome d complex utilizes ublqui- cytochrome 0 complex contains two to
dlhydroxylatlon in pyrrole nng C (Ref nol-8 as a substrate. The maximal turn- four subunits by SDS-PAGE analysis 21-23.
17). Optical and electron spin resonance over of the complex observed in this sys- There appear to be two protoheme IX
(ESR) studies clearly show that the tem is about 150 e -1, which is faster than groups (cytochrome bss5 and b562) and
cytochron ~ d component of the complex the rate observed m either intact cells or two Cu 2+ atoms per complex 22,23. The
binds to 0 2 and CO, and is directly in membrane preparations Turnover of two berne-two Cu 2÷ structure Is more
involved in the activation of 0 2 and its the cytochrome d complex tn these vest- reminiscent of the mttochondrial oxldase
reduction to water (see Refs 14 and 18). des generates a voltage difference across than the cytochrome d complex. The cvo
The redox r e a s o n catalysed by the the bilayer of at least 180 mV (negative gene which encodes the cytochrome o
cytochrome d complex generates an inside) and results in the translocauon of complex has been cloned and DNA
electrochemical proton gradient of 150- oae H + per electron from inside to out- sequencing is m progress (Genres et al,
180 mV (negative inside), across the side, comparable to the values associated unpublished) Questmns concerning
membrane, indicating that the complex with the respiratory chain in the E cob potential sequence homologies will be
serves as a coupling site of oxldatwe membrane addressed m the near future
phosphorylatlonn,tg.20 The purified The cytochrome o complex has also
cytochrome d ~omplex can be reconsti- been purified and proved to be a coup- Biophysical studies of the cytochromes in
tuted m umlamellar phosphohpld vesi- ling site for oxtdatlve phosphoryla- the oxidase complexes
cles with an cnentatlon which is at least uon 2t-26 The reconstltuuon results are The avatlablhty of the punfied
enzymes as well as membranes enriched
Tablelll Enzyoumcpropernes of Otetwo ternunal~~adases
m either oxldase has facthtated btophysl-
Cytochrome ocomplex Cytochmme d complex f:al approaches, m particular ESR For
Substrate (Kin, pM) example, ESR signals from each of the
Ublqumol-! 48 230 cytochrome components of the cyto-
Menadlol 38 17 chrome d complex have been assigned
O2 29 0 38 (Ref 18 and Memhardt, Genres and
inhibitor (mM)a Ohmshl, unpubhshed) As mentioned
KCN 0 01 2 previously, the ESR and optical data
NaN3 15 400 (Ref 27 and Lorence and Genres,
H202 300 120 unpubhshed) show that the cytochrome
HQNO 0 002 0 GO'/
I~enmchnA 0 002 0 015
d component of the complex is bound to
molecular oxygen at room temperature
~oncentration reqmred for 50% inhibition of ublqumol-I oxldase actlwly Furthermore, both ESR and optical data
TIBS 12-July 1987 265
suggest that the enzyme may pass fer reactions to the generation of a trans-
through a peroxy-mtermedtate bound to H/CH2 3 membrane electrochemical proton gra-
cytochrome d dunng the catalyUc cycle dient, and the terminal oxldases which
it Is also mdtcated by ESR expenments perform thts funcuon can contain hemes
that cytochromes b595 and d are physt- a, b or d (2) The resptratory chain of E
cally close (Ref 18 and Anraku et al, colt is mu:h less efficaent than the
unpubhshed) The probable sequence of mitochondnal chdln where at least three
electron flow ts as follows: protons are translocated per electron by
cyt bsss--+cyt b595---~cyt d---~O2 Complexes III and IV The E coh elec-
tron transfer system appears to be bruit
Quesuons concernmg the exact nature of for adaptabdlty rather than efficiency
~he mtermedtates revolved m the two-
electron ox~datton of ublqmnol and four- Condnsions
electron reduction of oxygen have yet to The apphcatlon of genetics, biochemi-
be addressed. cal and biophysical techmques has
The cytochrome o complex has also helped to answer many longstanding
been examined by both ESR ~s and res- questions concernmg the orgamzat~on of
onance Raman spectroscopy2S The data OJ~'CXOH o~C"~OH the aerobic resp]ratory cham m E coh
obtained are conssstent with a model that The two terminal oxldases clearly are at
Fig 2 The structure proposed for the heine d
has some SlnUlanty with the rmtochond- the heart of the E colt b~oenergeuc sys-
(chlorm) prosthenc group tn the cytochrome d com.
hal aa~-type ox~dase2~ It ~s suggested2s plex This ehlorm brads to 0 2 and Is presumably tem The proposed model ts not the only
that the cytochrome b~2 component of located near the msute surface of the cytoplasmic one that fits the data, and must be ver-
the complex ~s analagous to cytochrome membrane Thls group can be syntheslzed, m pnn- ified and filled m with cntscal detml con-
a and does not bind to CO or 02, ctple, from protoheme IX One of the pyrrole rings cermng the way m which these enzymes
whereas the cytochrome b~s5component ts reduced, defmtug th~sas a chlorm, and two hydro. carry out two- and four- electron cherms-
xyl groups have been added try with hemes The question of mter-
ss analagous to the 02 binding cyto-
chrome a3 component of the mltochond- mechate earner ~ystems serwng to fac~b-
nal ox~dase Further work ts necessary to difference across the membrane con- tate ubsqumone reducuon by some of the
test tlus model conutant with enzyme turnover Finally,
the reduct|on of 02 to H20 utdtzes one
Some functional aspects of the H + per electron on the cytoplasnuc
respiratory chain (tuner) side of the membrane The net
Figure 3 shows a stmple scheme for the reaeUon Is the electrogemc transfer of
functtonal organ~zatton of the compo- one H + across the membrane per elec-
nents of the resptratory chain and the tron In tins model, the enzyme does not
coupling sites for oxadatwe phosphoryla- funcUon as an ton pump, as the cyto-
uon m E. cob Dehydrogomses act on chrome c oxidases must, but, rather, as a
substrates on the inner surface of the transmembrane electron transferase m
cytoplasmic membrane, and transfer the which the proton translocatlon results
eqmvalent of two hydrogens (2e- plus from the chermcal reactmns that are
2H +) to ublqmnone-8 which ss vatlun the catalysed on the two sides of the mem-
membrane. brane. Note that m this model, ~t does
The ubzqumol-8 generated by the not matter whether the dehydrogenases
dehydrogenases ts presumably able to are located on the ms|de or outside of the
diffuse laterally wtthm the membrane membrane Tius is consment with the
and can also transfer reducing eqmva- observations that purified dehydro-
lents across the bdayer (see Ref 10) genases can be coupled to ~ . respiratory
Both of these features are built into the system when added to the outside of E
model tn Fig 3 Either of the two coh membrane vesicles, that ts, from the
oxMases will oxidize ubiqmnol-8 wrong stde (see Ref 30)
Ubtqumone serves as a branch pomt m Presumably, the stte of ubtqtanol oxi-
the respiratory system, and can prowde dation by the cytochrome o complex is
electrons to either oxadase The also near the outer surface of the mem-
ublqumol oxadal3on stte of the cyto- brane If the analogy with the
chron,e d complex is located near the mttochondnal oxldase ,s correct,
cyto-
penplasnuc (outer) surface of the mem- chrome b562 would be expected to be
brane and is assocaated primarily with ¢hrectly revolved m the oxzdatwe part of
subumt I (cytc~hrome b55s) The oxida- the reacuon on the outer surface of the Ftg 3 A modelfortheaeroblcresplratorvsvstemm
tion of ub|qumol releases two protons membrane Copper could serve an elec- the cytoplasmic membrane of E cob A series of
tron transfer anti/or O2-bmdmg function, dehydrogenases reduce ublqumone-8, the product,
(one H+/electron) The electrons are
ubtqumol-8, diffuses wuhm the bdayer and is
then transferred through cytochrome and cytochrome o (b555)would be on the
oxl(hzed by either ternunal oxutase It t~ proposed
b595 to the other s~de of the membrane inner surface More data are reqmred to that the two oxtdase enzymes serve as coupling sites
where the 0 2 reducuon site is located, test this model for oA~datl~e phosphoq'latlon and generate a proton
associated with subumt I! (cytochrome Two points are worth emphasizing motwe force by sepasatmg the two half reactwns on
d) The electrogenlc transfer of electrons (I) Nature has evolved several alternate opposue sutcs of the membrane, as dl~trated Q
mechamsms for couphng electron trans- and F denote ublqumone.8 and FAD, respecnvely
ts respons|ble for generating the voltage
266 TIBS 1 2 - July 1987
dehydrogenases ts another area winch 5 Kranz,R G andGennts,R B (1985)J Bac- Htyama,T, Komsln,K, Iota, K and Anraku.
should be addressed, though there ts no tenol 161,709-713 Y (1985)Bmchtm Btoph.vs Acta 810,62-72
6 IOta.K. Murakaml,H. Oya. H and Anraku. 19 Koland,J G, Mdler,M J and Gennls,R B
hard evadence for tins at the present
Y (1985)Bmchem Int 10,319-326 (1984)Bmchermstry23 445-453
time 7 Murakaml,H, IOta.K and Anraku.Y (1986) 20 Mtller,M J andGenms.R B (1985)3 Biol
The last few years have clanfied the J Bwl Chem 261.548--551 Chem 260. 14003--14008
overall orgamzattonal pattern of the 8 Mm'akam~, H , IOta, K and Anraku.Y (1984) 21 Matsushtta. K, Patel, L, Gennls.R B and
respiratory chain, and the system can Mol Gee Genet 198,1--6 Kaback, H R (1983)Proc Ned Acad Scl
now be genettcally mampulated It was 9 Wallace. B J and Young. J G (1977) USA 80, 4889-4893
100 years ago that German Imcro- B~och~m B~ophys Acta 461,84-100 22 Matsusluta.K Patel. L and Kaback H R
10 Hackenbrock,C R, Chazotte, B and Gupte, (1984) Bmchermstry23, 4703--4714
b~olog~st T Eschench found Bacterium
S S (1986)l Bwenerg Bwmembranes 18, 23 Iola, K, Komsht.K and Anraku,Y (1984)
cob commune (renamed Eschertchta colt 331-368 J Btol Chem 259,3368-3374
later) The next few years, at the very I I IOta.K. Komsht,K and Anraku,Y (1984)J 24 Carter, K and Genres, R B (1985)J Btol
begmmng of the second century for E Btol Chem 259,3375-3381 Chem 260. 10986-10990
cob, vail focus on testing models and 12 Mdler,M J andGenms,R B (1983)J Bwl 25 Ktta,K, Kasahara.M and Anraku.Y (1982)
addressing questtons pertatmng both to Chem 258, 9159-91o5 J Bml Chem 257,7933-7935
bacterial physiology and the enzymology 13 Green, G N. Kranz,J E and Genres, R B 27 Poole,R K ,Salmon I andChance.B (1983)
(1984)Gene 32, 99-106 J Gen Mtcroblol 129,1345-1355
of tlus complex system
14 Lorence, R M Koland,J G and Genres, 28 Uno.T. Ntshlmura Y. Tsubol.M. gata. K
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4 Au, D C-T, Lorence. R M and Genres, 6069-6075 (Netdhardt, F C, ed ), Vol 1, pp 31-35,
R B (1985)./ Baacnol 161,123--127 18 Hata, A, Ionno, Y, Matsuura. K, Itoh, S. AmencanSocietyof Mtcrotnology