Professional Documents
Culture Documents
The atom, the molecule, and the covalent organic framework. Since the discussion of strong chemical interactions between atoms by Gilbert
N. Lewis in 1916, covalent organic chemistry has progressed from discrete molecules to porous covalent organic frameworks such as COF-1, the first
COF, illustrated here in the traditional Lewis dot structure.
A chronology of chemistry
SYNTHETIC CHEMISTRY beyond molecules
Since Lewis’ conceptual paper on the covalent
The atom, the molecule, and the bond, the systematic development of synthetic
organic methodologies has led to several impor-
tant advances in chemistry, a few of which are
covalent organic framework depicted in Fig. 1. The discovery of large macro-
molecular structures (1D polymers) opened up
the field of organic performance materials (8).
Christian S. Diercks and Omar M. Yaghi*
Another major milestone was the retrosynthesis
of complex organic natural products and their
Just over a century ago, Lewis published his seminal work on what became known as the
use in the pharmaceutical industry (2). Improve-
covalent bond, which has since occupied a central role in the theory of making organic
ments in synthetic methodology resulted in the
molecules. With the advent of covalent organic frameworks (COFs), the chemistry of the
realization of elaborate molecules, but the prob-
covalent bond was extended to two- and three-dimensional frameworks. Here, organic
lem remained of how to get these molecules to
molecules are linked by covalent bonds to yield crystalline, porous COFs from light
assemble in a regular fashion into more complex,
elements (boron, carbon, nitrogen, oxygen, and silicon) that are characterized by high
G
molecules, but also as a means of templating the
ilbert N. Lewis’ seminal work on chemical ganic chemists are masterful at exercising control synthesis of molecular macrocycles and cages (11),
bonding, “The Atom and the Molecule,” in zero dimensions. One subculture of organic and led to the templated synthesis of catenanes—
introduced the concept of what would be- chemists has learned to exercise control in one molecules held together by mechanical interlock-
come known as the covalent bond (1). He dimension. These are polymer chemists, the chain ing of molecular rings (12). The manner in which
outlined a conceptual approach for addres- builders. … But in two or three dimensions, it’s a mechanical bonds are introduced into frame-
sing the fundamental questions of how atoms synthetic wasteland.” works is discussed below.
can be joined to make molecules, and how to The challenge of making 2D and 3D covalent The knowledge of specific interactions can
describe the bonding of the atoms within these organic solids was addressed in the discovery and furthermore be used for the design of systems
molecules and its impact on reactivity and molec- development of covalent organic frameworks that undergo self-organization—that is, well-defined
ular properties. Chemists have since exploited (COFs), where extended structures are made by extended supramolecular architectures produced
these concepts in their efforts to master the craft stitching organic molecules together through by virtue of having selective weak interactions
of synthesizing specific molecules of varying struc- strong covalent bonds in a process termed retic- built into their molecular components (13, 14).
ture and complexity, which has led to the art and ular synthesis (5–7). The molecular units used in However, such supramolecular assemblies are dif-
science of total synthesis (2, 3). Today, the preci- reticulation possess the functionality necessary ficult to modify without losing their structure, be-
sion with which organic molecules can be func- to form specific linkages in a chemically and geo- cause (i) modification of the building blocks will
tionalized and their geometry controlled has metrically defined fashion to construct the frame- alter the interactions between the constituents
matured to the point of rational synthesis. work. In the synthesis of crystalline COFs and the and thus lead to different assemblies, (ii) perform-
However, such methods are not useful in con- application of precision organic chemistry to their ing chemistry on these assemblies is difficult
trolling how molecules link together by covalent structures without losing crystallinity, covalent without destroying their structural integrity, and
bonds to design extended structures. Such a retic- bonds create robustness and directionality (nec- (iii) the thermal and chemical robustness of their
ulation process must be carried out under syn- essary to control the spatial orientation of the structure puts a limit on their applications. Al-
thetic conditions that maintain the integrity of building blocks), achieve well-defined crystalline though nature uses self-organization to assemble
the molecule while allowing for microscopic re- solids, and ultimately introduce variations and complex architectures such as those of enzymes
versibility in order to afford ordered, crystalline complexity. In the context of Lewis’ original work, or DNA, these assemblies generally have a 1D
products. The chemistry of such extended organic COFs become the natural extension of the mole- covalent backbone that plays a crucial role in
solids remained largely undeveloped throughout cule. In a manner akin to how molecules are geo- maintaining their overall structural integrity. Thus,
the 20th century, most likely because reticulat- metric constructs of atoms, COFs are geometric it is essential to develop strategies that align
ing molecules formed through covalent bonds constructs of molecules linked by covalent bonds. molecular building blocks not by weak interac-
were amorphous materials, thus precluding their Furthermore, just as the molecule positions atoms, tions, but rather by those based on strong co-
structural characterization by x-ray crystallogra- COFs position molecules in a specific spatial orien- valent interactions in a geometrically well-defined
phy. This was especially true for two-dimensional tation to encompass space into which the reactivity manner. When this goal is achieved, it becomes
(2D) and 3D covalent organic solids, as high- of the atom and the molecule are revealed and possible to introduce functionalities and com-
lighted by an article published in 1993 (4): “Or- used in ways not possible in discrete molecules. plexity within the backbone of such covalent
Here, we highlight the theoretical basis for de- frameworks.
Department of Chemistry, University of California, Berkeley,
signing the framework and show how the covalent Inspired by the underlying dynamic processes
CA 94720, USA; Materials Sciences Division, Lawrence backbone allows for organic chemistry to be that form the basis for supramolecular chemistry,
Berkeley National Laboratory, Berkeley, CA 94720, USA; Kavli exercised beyond the molecule. We also describe extensive research has been devoted to the forma-
Energy NanoSciences Institute, Berkeley, CA 94720, USA; the emerging union of the covalent and the me- tion of covalent bonds under thermodynamic con-
Berkeley Global Science Institute, Berkeley, CA 94720, USA;
and King Abdulaziz City for Science and Technology, Riyadh
chanical bond in the framework and demonstrate trol (15, 16). This area has received widespread
11442, Saudi Arabia. how this leads to frameworks of mechanical en- attention during the past decade, as such control
*Corresponding author. Email: yaghi@berkeley.edu tanglements, including interlocking and weaving would facilitate the formation of interlocking
molecules, shape-persistent organic cage com- Conceptual basis of covalent out the framework. Specific parts of these mol-
pounds, and other complex molecular architec- organic frameworks ecules can function as the sites of reactivity in
tures (17–20). In 2005, the strategy of forming Organic chemistry offers an extensive library of catalytic transformations, binding of gases for ap-
covalent bonds reversibly, which provides for er- molecules that can be synthesized to serve as plications in storage and separations, and modu-
ror correction, was used to reticulate molecular building blocks in the construction of COFs. A lation of electronic properties affecting the entire
building blocks into extended, crystalline covalent framework, whether a COF or any other covalent framework.
organic frameworks (6). The advantages of re- extended structure, is composed entirely of two In terms of the underlying net, the geometry of
ticular synthesis were apparent: The strong distinct components: linkers (building units) and the molecular building block is represented as a
bonding allowed for the removal of residual sol- linkages (bonds formed between those units upon vertex figure to be linked into what is described
vent molecules from these organic solids, resulting reticulation). Thus, the organic synthesis of COFs as the augmented net. From the large number of
in highly porous crystalline 2D and 3D frameworks starts with the synthesis of the building blocks possible structures that could result, which ones
(Fig. 1). The architectural and chemical robustness and ends with the reticulation of these building are likely to form? For example, linking of tetra-
of these COFs meant that precision organic and blocks by stitching them together in a designed hedra may result in one or more structures from a
inorganic chemistry could be carried out on a way into an extended framework. The general large number of possible structures (as many as
COF while maintaining its crystallinity, thus com- approach for the reticular synthesis of COFs is several million). Among this vast structure space,
mencing the development of the chemistry of the illustrated in Fig. 2. In step 1, a target network which will form? It has been the thesis of retic-
framework. The same chemistry used to make the topology is identified and deconstructed into its ular synthesis that the most symmetric structures
COF backbone can be deployed along with metal- fundamental geometric units (23). In step 2, these are the most likely to form when high-symmetry
ion templates to make metallated COFs, which constituents are evaluated according to their points building blocks are used. Indeed, this has been
Fig. 1. Chronology of advances from Lewis’ original concept of the covalent bond. Shown are important advances in synthetic organic chemistry
that have led to the development of 2D and 3D covalent organic frameworks (COFs) and, more recently, weaving frameworks.
the thermodynamics (microscopic reversibility Indeed, it is often the practice that a PXRD pat- following the concepts outlined above and il-
of the linkages between the building units) and tern is calculated for the expected structure and lustrated in Fig. 2. Table 1 summarizes the con-
the kinetics (appropriate rate of the reaction) compared to the experimentally acquired data. nectivity, vertex figure, resulting topology, and
of the COF-forming reaction, crystalline 2D and Such comparison, which facilitates the determi- first reported example of various COFs. Thus far,
3D frameworks can be made (6, 7). Finally, in nation of the structure, would not be possible all known COFs are based on a total of eight com-
step 5, if the product is single-crystalline in na- without knowledge of the targeted framework, mon topologies. In the case of 2D COFs, there are
ture, the material is characterized by x-ray or elec- so COFs are illustrative examples of true design five possible topologies for which the vertices are
tron diffraction techniques. When suitable single in making solid-state materials. connected by one kind of edge (fig. S1) (23–27).
crystals cannot be achieved, powder x-ray diffrac- At present, more than 100 COF structures have Four of these have already been made as COFs
tion (PXRD) is used to evaluate whether the tar- been reported, with at least twice that number in (Table 1 and figs. S2 to S5) (6, 28–30). For 3D to-
geted structure has been successfully obtained. derivatives. All of these structures were prepared pologies, there are many more possibilities, but
only four of these have been reported in COFs
(Table 1 and figs. S6 to S10) (7, 31, 32).
COFs of varying linker connectivity, linker size,
and character of the linkages have been reported
(Fig. 3). In general, the reactions that are used in
the formation of COFs can be classified in terms
of the linkages they form. These are (i) B–O (boro-
xine, boronate ester, borosilicate, and spiroborate)
opening reactions of hydroxyl groups on the link- 3,4 ctn Triangle, tetrahedron 2122 2007 (7)
.....................................................................................................................................................................................................................
er with maleic anhydride. This synthetic strategy 3,4 bor Triangle, tetrahedron 2122 2007 (7)
.....................................................................................................................................................................................................................
was essential, as presynthetic installation of car- 4,4 pts Square, tetrahedron 2122 2016 (32)
.....................................................................................................................................................................................................................
proline moieties within the framework’s pores. Pore aperture HHTP-DPB COF 4.7 nm (71)
.....................................................................................................................................................................................................................
The resulting material showed high activity in SA BET for 3D COFs COF-103 4210 m2 g−1 (7)
.....................................................................................................................................................................................................................
catalytic enantioselective Michael additions (51). SABET for 2D COFs TPB-DMTP-COF 2015 m2 g−1 (72)
.....................................................................................................................................................................................................................
Interestingly, immobilizing catalytic units on this Excess CO uptake (273 K)
2 [HO] 50% -H P-COF
2 174 mg g−1 (34)
.....................................................................................................................................................................................................................
−4
well-defined COF made this transformation ame- Proton conductivity (373 K) TPB-DMTP-COF 7.0 × 10 S (73)
.....................................................................................................................................................................................................................
nable to continuous flow conditions. Recently, me- Charge mobility COF-366 8.1 cm2 V−1 s−1 (48)
.....................................................................................................................................................................................................................
tallation of the porphyrin building block resulted Earliest report
.....................................................................................................................................................................................................................
in a cobalt-functionalized derivative, COF-366-Co Capacitance DAAQ-TFP COF 2013 (40)
.....................................................................................................................................................................................................................
(52). This framework and other derivatives showed Heterogeneous catalysis Pd/COF-LZU1 2011 (47)
.....................................................................................................................................................................................................................
high activity and selectivity for the electrocatalytic Electrocatalysis COF-366-Co 2015 (52)
.....................................................................................................................................................................................................................
reduction of CO2 to CO in water with improved Photocatalysis TFPT-COF 2014 (57)
.....................................................................................................................................................................................................................
performance (factor of 26 increase in activity) over Postsynthetic modification COF-LZU1 2011 (47)
.....................................................................................................................................................................................................................
the molecular catalyst. This example shows how Oriented thin films COF-5 2011 (74)
.....................................................................................................................................................................................................................
the intrinsic properties of the structure (high charge- Photoluminescence TP-COF 2008 (75)
.....................................................................................................................................................................................................................
carrier mobility and permanent porosity) in com- Photoconduction TP-COF 2009 (76)
.....................................................................................................................................................................................................................
bination with the functionalization of the framework
.....................................................................................................................................................................................................................
(metallation with cobalt) result in a highly tunable
material, leading to higher performance. In sum,
modification of COFs with a large number of dif-
ferent functionalities has been used to adjust pore covalent bonds, whereas the secondary and to each other. Traditional covalent organic frame-
metrics (45), to stabilize the framework itself (53, 54), tertiary structure—those parts that are respon- works suffer from a common problem in covalent
to improve interactions with gases (49, 50, 55), for sible for the spatial orientation of the system— extended solids: When they are flexible, they ulti-
applications in energy storage (40), and for a man- typically arise from noncovalent interactions, such mately fail. Large-amplitude motions in covalent-
ifold of catalytic transformations as summarized as hydrogen bonding. Large-amplitude structural ly linked frameworks lead to breaking of bonds,
in Table 2 (47, 51, 52, 56, 57). These modifications motions can occur repeatedly and reversibly with- which results in defects and consequently structur-
of COFs can be done without losing crystallinity out loss of structural integrity. It would be desira- al collapse. One strategy used to enable motions
or porosity, giving credence to the notion of frame- ble to achieve this dynamic resilience in solid-state on the molecular level is mechanical interlock-
works being used in chemical transformations as materials, especially in the chemistry of the frame- ing, in which two molecules are mechanically en-
molecules (58). work; practical applications often put materials tangled in such a manner that they cannot part
under cycles of stress and strain that can lead to company without the breaking of at least one co-
The union of the covalent and fatigue and damage. However, to date, there has valent bond.
mechanical bonds in the framework been no advance in developing a viable concep- To appreciate the power of combining the co-
An intriguing feature of biological macromole- tual approach to tackle this issue. Supramolecular valent and the mechanical bonds, it is helpful to
cules such as nucleic acids and proteins is that assemblies suffer from structural degradation upon consider the evolution of the latter. The first suc-
they have a primary structure formed by strong large motions of their building blocks with respect cessful synthesis of a molecule held together by
Future prospects
The reticular synthesis of covalent organic frame- Fig. 5. Four modes of entanglement in frameworks. The entanglement of 3D or 2D structures is
works is still at an early stage of its development. referred to as interpenetrating, the formation of mechanical bonds between 1D chains is referred to
Currently, the field is mostly driven by potential as weaving, and interlocking structures are obtained by the entanglement of 0D rings.
future applications, often at the expense of de- interface, is no longer true in the framework. 20. J.-F. Ayme et al., A synthetic molecular pentafoil knot. Nat. Chem.
veloping the basic chemistry of the framework or Here, the surface can be 2D, but more important, 4, 15–20 (2011). doi: 10.1038/nchem.1193; pmid: 22169866
21. Y. Liu et al., Weaving of organic threads into a crystalline
its design principles. However, there is no doubt it can also assume various different 3D surface covalent organic framework. Science 351, 365–369 (2016).
that the ability to build frameworks by covalently geometries, each of which may have a hierarchi- doi: 10.1126/science.aad4011; pmid: 26798010
stitching together organic molecules will contin- cal arrangement of pores capable of confining 22. J. Jiang, Y. Zhao, O. M. Yaghi, Covalent chemistry beyond
ue to be important because of the precision of the substrates to interacting with binding sites molecules. J. Am. Chem. Soc. 138, 3255–3265 (2016).
doi: 10.1021/jacs.5b10666; pmid: 26863450
this process and the control being exercised in of a specific size and geometry. The ability to 23. M. O’Keeffe, O. M. Yaghi, Deconstructing the crystal structures
placing molecules in specific geometric and spa- have a network interface within a 3D framework of metal-organic frameworks and related materials into their
tial arrangements. The power of this practice is construct that can be chemically modified, its underlying nets. Chem. Rev. 112, 675–702 (2012). doi: 10.1021/
already leading to unusual materials and proper- pore shape and size systematically varied, and cr200205j; pmid: 21916513
24. M. O’Keeffe, M. A. Peskov, S. J. Ramsden, O. M. Yaghi, The
ties with a wide range of applications in catalysis, the electronic and steric character of the designed Reticular Chemistry Structure Resource (RCSR) database of,
gas storage and separations, and electronics. We binding sites crafted to promote a specific bind- and symbols for, crystal nets. Acc. Chem. Res. 41, 1782–1789
anticipate that this will continue to be important ing, constitutes the emergence of shape-selective, (2008). doi: 10.1021/ar800124u; pmid: 18834152
well into the future because historically, the field size-selective, and electronically selective surfaces 25. O. Delgado-Friedrichs, M. O’Keeffe, O. M. Yaghi, Taxonomy of
periodic nets and the design of materials. Phys. Chem. Chem.
of chemistry has flourished as our skills to control and interfaces. Phys. 9, 1035–1043 (2007). doi: 10.1039/B615006C;
matter on the atomic and molecular level have pmid: 17311144
advanced. In the present context, the progression 26. N. W. Ockwig, O. Delgado-Friedrichs, M. O’Keeffe, O. M. Yaghi,
from atoms and molecules to assemblies and, more RE FERENCES AND NOTES Reticular chemistry: Occurrence and taxonomy of nets and
grammar for the design of frameworks. Acc. Chem. Res. 38,
recently, to frameworks is an intellectually engag- 1. G. N. Lewis, The atom and the molecule. J. Am. Chem. Soc. 38,
176–182 (2005). doi: 10.1021/ar020022l; pmid: 15766236
44. B. Nath et al., A new azodioxy-linked porphyrin-based through polarity engineering. Chem. Mater. 27, 7874–7881 chemistry. Coord. Chem. Rev. 246, 247–289 (2003).
semiconductive covalent organic framework with I2 doping- (2015). doi: 10.1021/acs.chemmater.5b02151 doi: 10.1016/S0010-8545(03)00126-7
enhanced photoconductivity. CrystEngComm 18, 4259–4263 56. Y. Wu, H. Xu, X. Chen, J. Gao, D. Jiang, A π-electronic covalent 69. A. F. Wells, Structural Inorganic Chemistry (Oxford Univ. Press,
(2016). doi: 10.1039/C6CE00168H organic framework catalyst: P-walls as catalytic beds for 2012).
45. R. W. Tilford, S. J. Mugavero 3rd, P. J. Pellechia, J. J. Lavigne, Diels-Alder reactions under ambient conditions. Chem. 70. Y.-B. Zhang et al., Single-crystal structure of a covalent organic
Tailoring microporosity in covalent organic frameworks. Adv. Commun. 51, 10096–10098 (2015). doi: 10.1039/ framework. J. Am. Chem. Soc. 135, 16336–16339 (2013).
Mater. 20, 2741–2746 (2008). doi: 10.1002/adma.200800030; C5CC03457D; pmid: 26000867 doi: 10.1021/ja409033p; pmid: 24143961
pmid: 25213899 57. L. Stegbauer, K. Schwinghammer, B. V. Lotsch, A hydrazone- 71. E. L. Spitler et al., A 2D covalent organic framework with
46. A. Nagai et al., Pore surface engineering in covalent organic based covalent organic framework for photocatalytic hydrogen 4.7-nm pores and insight into its interlayer stacking. J. Am.
frameworks. Nat. Commun. 2, 536 (2011). doi: 10.1038/ production. Chem. Sci. 5, 2789–2793 (2014). doi: 10.1039/ Chem. Soc. 133, 19416–19421 (2011). doi: 10.1021/ja206242v;
ncomms1542; pmid: 22086337 C4SC00016A pmid: 22014294
47. S.-Y. Ding et al., Construction of covalent organic framework 58. P.J. Waller et al., Chemical conversion of linkages in covalent 72. H. Xu, J. Gao, D. Jiang, Stable, crystalline, porous, covalent
for catalysis: Pd/COF-LZU1 in Suzuki-Miyaura coupling organic frameworks. J, Am. Chem. Soc. 138, 15519–15522 organic frameworks as a platform for chiral organocatalysts.
reaction. J. Am. Chem. Soc. 133, 19816–19822 (2011). (2016). doi: 10.1021/jacs.6b08377 Nat. Chem. 7, 905–912 (2015). doi: 10.1038/nchem.2352;
doi: 10.1021/ja206846p; pmid: 22026454 59. E. Wasserman, The preparation of interlocking rings: pmid: 26492011
48. S. Wan et al., Covalent organic frameworks with high charge A catenane. J. Am. Chem. Soc. 82, 4433–4434 (1960). 73. H. Xu, S. Tao, D. Jiang, Proton conduction in crystalline
carrier mobility. Chem. Mater. 23, 4094–4097 (2011). doi: 10.1021/ja01501a082 and porous covalent organic frameworks. Nat. Mater.
doi: 10.1021/cm201140r 60. H. L. Frisch, E. Wasserman, Chemical topology. J. Am. 15, 722–726 (2016). doi: 10.1038/nmat4611;
49. S. Zhao et al., Channel-wall functionalization in covalent Chem. Soc. 83, 3789–3795 (1961). doi: 10.1021/ pmid: 27043780
organic frameworks for the enhancement of CO2 uptake and ja01479a015 74. J. W. Colson et al., Oriented 2D covalent organic
CO2/N2 selectivity. RSC Advances 6, 38774–38781 (2016). 61. G. Schill, A. Lüttringhaus, The preparation of catena framework thin films on single-layer graphene. Science 332,
doi: 10.1039/C6RA04859E compounds by directed synthesis. Angew. Chem. Int. Ed. Engl. 228–231 (2011). doi: 10.1126/science.1202747;
50. N. Huang, R. Krishna, D. Jiang, Tailor-made pore surface 3, 546–547 (1964). doi: 10.1002/anie.196405461 pmid: 21474758
engineering in covalent organic frameworks: Systematic 75. S. Wan, J. Guo, J. Kim, H. Ihee, D. Jiang, A belt-shaped, blue
Editor's Summary
Article Tools Visit the online version of this article to access the personalization and
article tools:
http://science.sciencemag.org/content/355/6328/eaal1585
Science (print ISSN 0036-8075; online ISSN 1095-9203) is published weekly, except the last week
in December, by the American Association for the Advancement of Science, 1200 New York
Avenue NW, Washington, DC 20005. Copyright 2016 by the American Association for the
Advancement of Science; all rights reserved. The title Science is a registered trademark of AAAS.