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DBS Survey - Study Design-Version 9
DBS Survey - Study Design-Version 9
LOCAL CONTACTS:
The table below summarises the key roles of each organisation and the responsibilities of PSI/PSK
research staff involved in the study.
Monitoring the spread of resistant genetic backgrounds to identify areas of future emergence. 1
Identification of gene flow patterns between populations, and of transmission hotspots where
strains tend to admix, to help identify high-priority elimination targets.
Assessment of genetic similarity to assess geographical provenance of imported strains, and the
contribution of cross-border travel.
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Identification of locally expanding highly inbred populations of resistant parasites 11 to help
monitor the emergence and spread of new resistant strains.
The goal of this study is to contribute knowledge to National Malaria Control Programmes and other
groups in the GMS through the genetic surveillance of P. falciparum, in order to inform the inventions
above.
3. RESEARCH OBJECTIVES
The study aims to determine the prevalence and geographical distribution of antimalarial drug
resistance-linked genetic mutations, the genetic structure of the parasite population, likely routes of
gene flow between populations, and geographic origins of parasites in the GMS.
Primary Objective
To determine the prevalence and Annual maps and reports on the Annually, starting
geographical distribution of antimalarial prevalence of drug resistance-linked 12 months after the
drug resistance-linked genetic mutations in genetic mutations in P. falciparum and project start
clinical P. falciparum and mixed infections in mixed parasites in the GMS, and in
the GMS, and in particular in Cambodia particular in Cambodia
Secondary Objectives
1. To determine the genetic population Annual analysis reports on Annually, starting
structure and degree of differentiation Genetic population structure and 12 months after the
of P. falciparum parasites within and degree of differentiation of P. project start
between different regions in the GMS, falciparum parasites within and
and in particular in Cambodia between different regions in the
2. To estimate gene flow patterns and GMS, and in particular in Cambodia
likely geographic origin of P. falciparum Gene flow patterns and likely
malaria parasites in the GMS, and in geographic origin of P. falciparum
particular in Cambodia malaria parasites in the GMS, and in
particular in Cambodia
4. COUNTRY/HEALTH CONTEXT
Although considerable progress has been made in malaria control in the GMS during the past 10 years,
malaria remains a major concern for the international community and ministries of health in the region.
This is due primarily to the development and possible spread of resistance to artemisinin drugs, the
principal component of the combination therapies for malaria that now are the first-line treatment for
malaria throughout the GMS and the world. Plasmodium falciparum resistance to artemisinin drugs was
first confirmed in western Cambodia; treatment failures to artemisinin-based combination therapy (ACT)
have been reported from multiple sites on the Thai-Cambodian border; and an early warning sign of
3 Cambodia, 2017
artemisinin resistance – prolongation of parasite clearance times – has been reported throughout the
region.
Over the last decade, many of Cambodia’s key health indicators have improved as the country’s
economy has developed. Significant progress has also been achieved in malaria prevention and control;
since 2009, malaria incidence, malaria cases, and malaria deaths have all decreased. Despite the
successes, artemisinin resistance and mobile at-risk populations remain challenges to reaching national
elimination goals. Malaria predominantly affects adult males, many of whom are workers who move
from low to high transmission areas and lack access to malaria services and education, which makes
them more vulnerable to infection. In 2014, Cambodia developed a Malaria Elimination Action
Framework, the goal of which is to eliminate P. falciparum by 2020. This framework lays out a phased
approach whereby districts progressively transition from implementing burden control activities to
malaria elimination activities.
While the Thai/Cambodian border has historically been the epi-centre of drug resistance, today, there is
evidence that artemisinin resistance is appearing de novo across the GMS. In light of the significant
number of patients who seek care for suspected malaria from the private sector, outlets in PSK’s Public
Private Mix program (~700 outlets) and its Worksite program (~130 sites) provide an opportunity to
provide samples to the GenRe-Mekong program in addition to those already being supplied through
Cambodia’s NMCP public sector facilities as part of the same program.
5. SUMMARY OF PROGRAM
The study is a genetic reconnaissance activity to be conducted in Cambodia in partnership with the
GenRe-Mekong project, described above. It is proposed that dried blood spot (DBS) samples will be
collected along with short surveys on patient demographics and population movement from every
confirmed case of P. falciparum and mixed malaria presenting to – initially – 100 PSK/PSI Cambodia
health outlets across 8 12 selected provinces in Cambodia: (1) Banteay Meanchey, (2) Kampong
Chhnang, (3) Kampong SpeuCham, (4) Kampong Thom, (5) Koh Kong, (6) Kratie, (7) Mondul Kiri, and
(8) Steung Treng, (9) Rattanak Kiri, (10) Tboung Khmom, (11) Preah Sihanouk and (12) Preah Vihear . The
study objective is to determine, for P. falciparum and mixed infections, the prevalence and geographic
distribution of antimalarial drug resistance-linked genetic mutations, as well as the genetic structure of
the parasite population, likely routes of gene flow between populations, and geographic origins of
parasites.
4 Cambodia, 2017
strains were to spread to other endemic regions, particularly to Africa. Historical evidence supports
these concerns: P. falciparum drug resistance originated and spread from the GMS on multiple
occasions, causing high global levels of resistance to important antimalarials such as chloroquine,
sulfadoxine-pyrimethamine and mefloquine. Countries in the GMS region have been repeatedly at the
epicentre of drug resistance emergence, and there is mounting evidence that some parasite populations
from this region carry a genetic background, which facilitates the development of multidrug resistance. 1
Because of the recurring emergence of antimalarial resistance, the WHO and major funders have
identified as a the elimination of P. falciparum malaria in the GMS as a public health emergency, and
have planned intensified and accelerated elimination efforts. 10 However, the resistant nature of strains
circulating in the GMS makes it increasingly difficult to select effective frontline treatments that can be
relied on for such elimination efforts. 6 In addition, drug resistance is causing parasite populations to
evolve and expand in complex patterns, such as independently-emerging founder populations which
carry distinct resistant mutations, making it harder to implement simple monitoring of genetic markers
to support the planning of intervention strategies. 1,11,12
7. RESEARCH DESIGN
This is a prospective observational study of patients with confirmed P. falciparum and mixed infection
using parasite DNA obtained from point-of-care finger prick dried blood spot samples and a short survey
on patient demographics, employment, and travel, and mobile phone use to study P. falciparum
parasite genotypes, population characteristics, and gene flow patterns.
The total duration of the study is expected to be 36 months following ethical approval. Training will
precede sample collection by up to 1 month. DBS sample and survey data processing, analysis, and
reporting are planned to take place on a rolling basis throughout the study.
Description of subjects
Study subjects are patients aged 5 years and above who present to one of initially 100 purposefully
selected PSK-supported sites in the 8 12 target provinces with P. falciparum or a Pf mixed infection. PSK-
supported sites are Public Private Mixed health providers (PPM) and Mobile Malaria Workers in
plantations (MMW).
Existing Standard Operating Procedures (SOPs) for PPM and MMW sites stipulate that patients
presenting with symptoms of suspected malaria and/or patients who have visited a forested area in the
past 2 weeks are tested for malaria by trained providers. These SOPs are in line with the most recent
National Malaria Treatment Guidelines for Cambodia. These SOPs further require that children under
age five, pregnant women and severe cases are referred to the nearest public facility; these categories
of patients will be excluded from this study. Patients who test positive for Pf or mixed infection by RDT
(or microscopy where available) will be eligible for this study. Full informed consent will be obtained
before any study-specific procedures are conducted.
All study participants must satisfy the applicable inclusion and exclusion criteria, as follows:
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Inclusion criteria Exclusion criteria
Male or female age 5 years and above. Children age <5 years of age.
P. falciparum or mixed malaria as confirmed by Pregnant women.
positive RDT or asexual forms of P. falciparum Patients with severe symptoms who require
on blood smear microscopy, where performed immediate referral.
(may be mixed with non-falciparum Patients with RDT negative results.
Plasmodium species). Patients with microscopy negative results.
Written informed consent to participate by
patient, or oral assent combined with written
consent from parent, guardian or legally
authorised representative for patients aged 14
to 17 years inclusive.
This is a surveillance study in an elimination setting. As such, there is no formal sample size calculation;
rather the study will seek to capture samples from all consenting eligible cases during the study period.
It is estimated that approximately 3,000 dried blood spots per annum will be collected from 100 sites,
based on PPM and MMW monitoring data from 2016.
No. of
Total Total 2016 Positive Estimated Estimated
Providers for
Number Number Cases case load case load
N DBS
Provinces PPMs in MMW in From From
°
province province selected selected
PPM MMWs PPM MMWs
(2016) (2016) PPM sites MMW sites
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in province MMW in PPMs selected selected selected
(Dec 2015) province selected PPM sites MMW
(Dec 2015) sites
Kampong Speu 0 NP 0 TBD 0 NP
Stueng Treng 34 13 13 3 1633 21
Kratie 0 64 0 4 0 34
Mondul Kiri 46 16 18 3 750 34
Kampong
27 NP 10 TBD 473 NP
Chhnang
Kampong Thom 0 20 0 3 0 54
Koh Kong 26 NP 7 TBD 157 NP
Banteay
NP 0 TBD 0 NP 0
Meanchey
Total 133 113 48+ 13+ 3013 143
NP: This type of network was not present / not established as of Dec 2015
8. STUDY PROCEDURES
Informed consent
The age of legal consent in Cambodia is 18 years. On confirmation of P. falciparum or mixed infection
malaria by RDT or microscopy, the patient - or their parent, guardian or legal representative when the
patient is under age 18 - will be informed about the study. Eligible patients - or their parent, guardian or
legal representative when the patient is under age 18 - must provide written consent before study-
specific procedures are performed. In addition, oral assent will be required from patients aged 14 to 17
years inclusive who have the cognitive capability to make decisions.
A printed Participant Information Sheet (PIS) and Informed Consent Form (ICF) will be presented in
Khmer to the participants, parent/guardian, or legally authorised representative detailing: the exact
nature of the study; what it will involve for the participant; the implications and constraints of the
protocol; and any perceived benefits or risks involved in taking part. It will be clearly stated that the
participant is free to not join the study for any reason without prejudice to future care, without affecting
their legal rights, and with no obligation to give the reason for declining to join the study. The PSI and
ICF will be read by the health provider in cases where the patient or their adult representative is not
able to read the printed version.
The participant, parent/guardian, or legally authorised representative will be allowed as much time as
they wish for to consider the information, and the opportunity to question the provider directly or
contact the local Co-Principal Investigator (Co-PI) before deciding whether they will participate in the
study.
Written informed consent will then be obtained, as appropriate, from the patient, their parent, guardian
or legally authorised representative. The provider will countersign the consent form. Illiterate patients
will be asked for their thumbprint in lieu of a signature and a witness will be asked to sign the ICF to
confirm that the participant has been administered informed consent verbally and has agreed to
7 Cambodia, 2017
participate. Oral assent will be sought from all patients aged 14 to 17 years inclusive after sharing the PIS
and after seeking consent from their parent, guardian or legally authorised representative.
The person obtaining consent will be suitably qualified and experienced, and have been authorised to do
so by the Chief Investigator (CI). PSK, represented by the local Co-PI, will ensure these criteria are met
through support to MORU for the training of PPM providers and PSK-led on-the-job training at the time
of recruiting PPM and MMWs into the study.
In order to have a greater understanding of the possible sites of malaria transmission and to relate
genetic diversity to geographic location, patients or their parents/guardians will also be asked a short set
of questions on demographics, their places of residence and work, recent mobile phone use, and their
history of travel. Location questions will capture information at the village-level and above: no uniquely
identifying addresses will be recorded in this study. The basic questions on phone utilisation will provide
information on the use of mobile phones in the study population, including which mobile phone
companies are used, and how many SIM cards and handsets each person carries. No identifying phone
data (such as personal numbers) will be collected through this study, rather the data collected will be
employed to derive information on population movement from anonymised, aggregated data on mobile
phone telephone use, i.e. call detail records (CDR), obtained from mobile phone companies in each
country. This will be used for the modelling of population movement, its impact on the distribution of
malaria and antimalarial drug resistance, and subsequent prediction of potential routes of spread of
malaria and antimalarial drug resistance.
As some of this information can be sensitive, during the consent process the patient will be given the
option of not providing some or all of this information without needing to provide a reason. For those
who do not wish to provide information, this will be documented in the survey form.
All patients in the study will receive standard care for P. falciparum or mixed infection including drug
therapy according to the National Treatment Guidelines.
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Following data collection, the DBS filter paper will be air-dried overnight at room temperature before
being stored in a zip-lock plastic bag packed with a desiccant sachet. All bagged samples and associated
forms will be stored in a secured area (either an existing lockable site or in a lock box provided by the
project) until they are collected by a PSK-employed medical rep once a month. At this time, groups of 10
plastic bags with one DBS paper each will be placed in an aluminium foil bag for transport. The foil bags,
together with all associated consent forms, survey forms and a complete sample manifest, will be
packed into one large-size zip-lock bag for transport to Phnom Penh and handover to a MORU
representative.
Samples will be sent to the Wellcome Trust Sanger Institute (WTSI) in Hinxton, Cambridgeshire, UK for
genotyping and whole genome sequencing.
9. TRAINING
The MORU Chief Investigator and/or one or more MORU Investigators will travel from Thailand to
Phnom Penh to conduct a two-day training of trainers for selected PSK staff and PSK-employed medical
representatives. Training logistics will be supported and coordinated locally by PSK staff. The training of
trainers agenda will cover:
PSK medical representatives will cascade the training to PPM and MMW staff in their assigned provinces
during routine site visits.
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PPM providers and 3 mobile malaria workers, in separate provinces to the actual study. Insights from
the pilot test will be used to make any necessary adjustments to the study SOPs and data collection
tools (to improve the reliability of recorded data).
Whole-genome sequencing data alignment and genotype calling from Illumina sequencing data,
using bespoke computing pipelines for quality control. 14
Clustering analyses to derive genotypes from Sequenom (mass-spectrometry) data, using both
manufacturer-provided and bespoke software.
Allele frequency estimations for drug resistance mutations and other genome-wide variations,
and analyses of differentiation between populations and geographies (e.g. F ST).14
Analyses of heterozygosity, both within the population and within individual samples (e.g. F WS
and complexity of infection).15
Genetic distance estimation (measuring the degree of genetic divergence between individuals)
and analyses of population structure (identification of genetic subpopulations), including but not
limited to Principal Component Analysis, Neighbour–joining and hierarchical trees, STRUCTURE
and chromosome painting.10,12
Genomic analyses of haplotype length, similarity and diversity, to locate regions under selective
pressure, assess haplotype origin,10,16 or identify genetic introgression and recombination
events.
Future extended analyses may include genotyping of human variations (restricted only to those
relevant to malaria epidemiology, disease severity and response to antimalarial treatments) and
analyses of their epidemiology and correlations with parasite genetic variants.
Geographical analyses and mapping; analyses and correlation of genetic data with geographic,
demographic, employment, travel, and mobile phone use information, as well as information on
population movement from aggregated, anonymised CDR to model population movement, its
impact on the distribution of malaria and antimalarial drug resistance and subsequent
prediction of potential routes of the spread of malaria and antimalarial drug resistance.
Data flow
Data collection in the field is described above. On every monthly visit to a participating study site, the
PSK-employed medical representative will collect the DBS package and transport it back to Phnom Penh
for quality assurance checks and storage at the PSK office. Per MORU’s QA procedures, samples will not
10 Cambodia, 2017
be shared if they are missing information on location or date of sampling. PSK will attempt to rectify any
such cases prior to sharing material with MORU.
Once a month the local MORU representative will collect the available packages from PSK’s Phnom Penh
office and transport them to MORU Bangkok for data entry and processing.
The Case Reporting Form will be used as the source document for demographic, employment, travel,
and mobile phone use data. The local Co-PI is responsible for ensuring the accuracy, completeness, and
legibility of the data reported. All source documents will be completed in a neat, legible manner to
ensure accurate interpretation of data. When making changes or corrections, the original entry will be
marked through with a single line, initialled, and dated. There will be no erasing, overwriting, or using
correction fluid or tape on original documents.
All study documents will be stored securely at all stages and will be accessible only to study staff and
other authorised personnel. Paper records and DBS will be temporarily stored in locked cabinets in the
local study office at PSK, and periodically transported MORU Bangkok, Thailand for storage for a period
of up to 10 years before being destroyed by shredding. On arrival at MORU, investigators will check that
each survey tool and DBS sample is accompanied by a completed consent form. MORU investigators will
then separate the consent form from the study tools and store then separately. These paper records will
be accessible only to the Chief Investigator in Bangkok and authorised study personnel responsible for
the entry of data into electronic databases, as well as study personnel performing quality assurance.
Study electronic databases will be located at MORU, password-protected and accessible only to the
Chief Investigator and authorised study personnel, including the Co-PIs from PSK and PSI.
Genetic data will be generated only in electronic form, and stored in bespoke database systems
implemented at the WTSI and University of Oxford. These systems will provide access to the genetic
data, and to its accompanying data on location and date of sampling, and will guarantee patient
anonymity (as no personal identifiers are captured as part of this study). Access to the genetic data will
be through anonymous sample barcode identifiers, which do not carry any information about the
patient. Access to the genetic data will be restricted to the Chief Investigator and authorised study
personnel, until the time when the data is made available for open access as stipulated by the data
sharing policy. Access restrictions will be implemented through password-protected access to the
systems.
Data may be used alone or in combination with data from related studies in secondary analyses
(following the necessary ethical approval for such secondary analysis).
11 Cambodia, 2017
After Genetic Report Cards are shared with Investigators, genetic data from the submitted samples,
together with geographical location and date of sampling, will be deposited in the SpotMalaria Parasite
Evolution Observatory, an open access database of worldwide genetic variation. These data are initially
password-protected until inclusion in the next available data release. Periodic data releases will make
the data open access following a period of analysis by analysis working groups. All data made public via
the SpotMalaria Observatory will be anonymous as no personal identifiers are captured through this
study.
Anonymised data recorded in the Case Reporting Forms will be shared by PSK via DataVerse generally,
and specifically referenced there for open access as per the requirements of any journal in which the
results of the study are published.
A partnership agreement covering data sharing, standard protocols for describing and acknowledging
the study partner roles and SOPs for publishing joint publications will be agreed between MORU and
PSK/PSI in writing.
Any proposed plans to use samples other than for those investigations detailed in this protocol will be
submitted to the relevant ethics committees prior to any testing.
13. LIMITATIONS
The study success depends primarily on provider commitment to and performance aligned with the
study SOPs. To that end the Co-PIs will closely monitor levels of client recruitment by comparing
monitoring data available through an existing routine electronic system with the number of participants
recruited to this study. Dependent on the outcome of this analysis, the local study team will investigate
the possible role of non-financial incentives for participation.
12 Cambodia, 2017
14. REGULATORY REQUIREMENTS/ HUMAN SUBJECTS PROTECTION
Risks and Mitigating Risks
Potential Risks
Risks to subjects are Psychological Discomfort/Stress and Breach of Confidentiality.
Psychological Discomfort/Stress: A finger prick is required for this study. This will be a second finger
prick following the one administered outside of the study as part of standard malaria case management.
Conducting a second finger prick could induce stress, discomfort or fear in a subject. However, the
process for the finger prick is identical to the one that will have been used to test the patient in the first
instance, and this will be clearly explained to the subject.
Breach of Confidentiality: In this study, a breach of confidentiality could occur if private information
from the study could be linked to an individual participant and this information was obtained by
person(s) outside of the study. However, the risks to participants of a breach of confidence are very
small. No full names will be recorded on survey tools; location information (home and place of work or
school) will only be recorded at the village level and above (village, commune, district and province); and
survey tools will be linked to dried blood spot samples only by use of an anonymous barcode. On arrival
at MORU, investigators will check that each survey tool and DBS sample is accompanied by a completed
consent form. MORU investigators will then separate the consent form from the study tools and store
then separately.
Breaches of Confidentiality
1. Identification on data sources.
2. Staff ethical training. All PPM providers and Mobile Malaria Workers will be recruited from the
existing PSK network. They will be trained in human subject’s protection by PSK-employed medial
represenatives who have participated in a training of trainers; this training will underline the
importance of protecting privacy and confidentiality.
3. Participants’ rights. Research participants will be informed of risks and protections in the consent
form. Participants will also be informed of their right to withdraw from the study and to not answer
any questions they do not feel comfortable answering. Respondents will be provided contact
information for a local PSK employee who will be available to answer any questions about the study.
13 Cambodia, 2017
4. Data collection procedures will maintain subject confidentiality. PPM providers and Mobile Malaria
Workers will be trained to conduct subject interviews in privacy and to keep all information
obtained confidential. Study materials will be kept in locked storage boxes at PPM and MMW sites
while awaiting collection by PSK medical reprentatives.
5. Data reporting. All results of this research will be reported in aggregate form. Where individual case
data is made available per existing data sharing agreements, no identifying data will be included in
the open access databases.
Psychological Discomfort/Stress
If the respondent expresses discomfort or stress during the study-required finger prick or subsequent
interview, the PPM/MMW provider will pause and remind the respondent they can end their
participation at any time without consequence, or refuse to answer any question they wish; the provider
will give the respondent time to recover before proceeding with data collection (if the respondent
wishes to continue).
The PSK Co-PI will lead a local spot check team that will present at an outlet during the data collection
timeline to ensure that appropriate data collection methodologies are being applied. The spot check
team will silently observe and will stop any data/sample collection they observe in which the study
process is not being followed and/or there is evident discomfort on the part of the respondent. In all
instances the team will offer feedback to the provider based on how they performed during the
observed encounter.
Benefits
There are no direct benefits to the participants for their participation in the study. There are indirect
benefits in that information collected will help the National Malaria Control Program in Cambodia,
MORU, PSK/PSI and partners strengthen their decision-making and implementation activities in light of
rapidly evolving artemisinin drug resistance within the country and the wider GMS.
Consent/Assent procedures
A written consent process will be used. The patient - or the parent, guardian or legal representative of a
legal minor patient - will be given copies of the information sheet and consent form to read. If unable to
read, the entire information sheet and consent form will be read to him/her by the PPM provider or
MMW. Once the consent is read, the participant will be given time to ask questions. The patient, or the
parent, guardian or legal representative of a legal minor patient, will be asked to either sign or
thumbprint on the consent form to proof the agreement to join the study. A copy of the consent form
will be given to the respondent to keep.
There is risk that those under 18 years may be forced to participate in studies by others who have
authority over them. In addition to parental/ guardian consent, assent will be obtained from the legal
minor patients aged 14 to 17 after obtaining adult consent and before study procedures begin.
No participants will be included without their informed consent (and assent where appropriate). The
information sheet will include the following points:
14 Cambodia, 2017
Explains the purpose of this research and the expected number of subjects involved;
Clarifies the expected duration of the subject’s participation and the procedure followed;
Explains how the research will benefit the target groups and/or the participant, or society;
Describes potential risks if any are anticipated or explains that there are no known risks;
Clarifies that the subject’s participation is anonymous and that individual responses will be
not be linked to identifying information;
States that the subject’s participation is voluntary and that refusal to participate will have
no consequences;
States that some questions may cause discomfort and that subjects may refuse to answer
individual questions or desist from the interview at any time;
Provides the name and telephone number of a local PSK/PSI staff member who the subject
may contact with any pertinent questions about the research, about the health topics
discussed, or to whom the subject may issue a complaint; explains how subjects provide
verbal consent
The information sheet and informed consent forms will be written at a readability level adapted to the
selected audience.
Subject Compensation
Respondents will receive a towel for their participation in the study. This compensation will be given to
the respondent after completion of the Case Reporting Form. As the value of the towel is small, it will
not result in coercion to participate in the study. The compensation will also be paid even if the
respondent decides that they do not want to complete the discussion.
The local PSK Co-PI will monitor study packages as they return from the field on a monthly basis and
perform quality spot checks on 10% on the case record forms and sample manifests.
16. REFERENCES
X1.Miotto O, Amato R, Ashley Ea, et al. Genetic architecture of artemisinin-resistant Plasmodium
falciparum. Nature Genetics. 2015.
15 Cambodia, 2017
2. Dondorp AM, Nosten F, Yi P, et al. Artemisinin resistance in Plasmodium falciparum malaria. N
Engl J Med. 2009;361(5):455-467.
3. Amaratunga C, Sreng S, Suon S, et al. Artemisinin-resistant Plasmodium falciparum in Pursat
province, western Cambodia: a parasite clearance rate study. The Lancet infectious diseases.
2012;12(11):851-858.
4. Phyo AP, Nkhoma S, Stepniewska K, et al. Emergence of artemisinin-resistant malaria on the
western border of Thailand: a longitudinal study. Lancet. 2012;379(9830):1960-1966.
5. Ashley EA, Dhorda M, Fairhurst RM, et al. Spread of artemisinin resistance in Plasmodium
falciparum malaria. The New England Journal of Medicine. 2014;371(5):411-423.
6. Amaratunga C, Lim P, Suon S, et al. Dihydroartemisinin-piperaquine resistance in Plasmodium
falciparum malaria in Cambodia: a multisite prospective cohort study. The Lancet. Infectious
diseases. 2016;16(3):357-365.
7. Leang R, Taylor WR, Bouth DM, et al. Evidence of Plasmodium falciparum Malaria Multidrug
Resistance to Artemisinin and Piperaquine in Western Cambodia: Dihydroartemisinin-Piperaquine
Open-Label Multicenter Clinical Assessment. Antimicrobial agents and chemotherapy.
2015;59(8):4719-4726.
8. Saunders DL, Vanachayangkul P, Lon C. Dihydroartemisinin-piperaquine failure in Cambodia. The
New England Journal of Medicine. 2014;371(5):484-485.
9. Carrara VI, Lwin KM, Phyo AP, et al. Malaria burden and artemisinin resistance in the mobile and
migrant population on the Thai-Myanmar border, 1999-2011: an observational study. PLoS
medicine. 2013;10(3):e1001398.
10. World Health Organization. Strategy for Malaria Elimination in the Greater Mekong Subregion
Geneva: World Health Organization;2015.
11. Miotto O, Almagro-Garcia J, Manske M, et al. Multiple populations of artemisinin-resistant
Plasmodium falciparum in Cambodia. Nature Genetics. 2013;45(6):648-655.
12. Takala-Harrison S, Jacob CG, Arze C, et al. Independent emergence of artemisinin resistance
mutations among Plasmodium falciparum in Southeast Asia. The Journal of Infectious Diseases.
2015;211(5):670-679.
16 Cambodia, 2017
Appendix 1: Participant information sheet and consent form
Study title: Genetic epidemiology of P. falciparum malaria and associated antimalarial drug
resistance
2. Purpose of Study
There is a group of drugs called artemisinins which are recommended by the World Health Organization
(WHO) and used all around the world in combination with a partner drug to treat people with malaria.
These artemisinin-combination therapies have always been considered to work very quickly, and are
very safe and effective at curing the disease.
However, in many places this treatment now takes longer to kill the parasites and in some cases the
treatment has not worked. This means that the artemisinins and their partner drugs may be becoming
less effective and the falciparum parasites are becoming resistant to treatment. There is a concern that
this resistance may be becoming more common in this region and may even spread to other parts of the
world. This has happened before with other antimalarial drugs.
It is important that we study the falciparum parasite and its genes to look for signs of resistance to
artemisinins and other antimalarial drugs, where these parasites with signs of resistance are, whether
these signs of resistance are spreading, as well as collect information to work out where you/your child
might have caught the falciparum infection. This would help with planning how best to treat and stop
the spread of falciparum malaria.
17 Cambodia, 2017
3. What Does Participation in the Study Involve?
You/your child will have a tiny blood sample taken from your/their finger which will be blotted onto a
small piece of paper. In total, we will collect approximately 1 large drop of your/their blood. It will be
the same as when I took your/your child’s blood for the blood test we just did to test for malaria.
We will also ask you about where you/your child live, where you/your child work, where you/your child
have travelled to recently, and how you/your child use your mobile phone to find out where you/your
child might have been infected by malaria. If you feel you do not want to answer some or all of the
questions asked for any reason, you do not have to do so and you do not need to provide a reason.
18 Cambodia, 2017
The risks are of blood being obtained with a finger prick which include discomfort, occasionally bleeding
or bruising of the skin at the site where the needle goes in, and rarely infection. If any of these occur,
they usually go away in a short period of time.
Participation to this study is voluntary and refusal to participate will have no consequence.
19 Cambodia, 2017
Informed Consent Form
Study title: Genetic epidemiology of P. falciparum malaria and associated antimalarial drug
resistance
I have/my child has been invited to participate in the study mentioned above.
I confirm that I have read the patient information sheet for the above study or someone else has read
this information to me. I have had the opportunity to consider the information and ask questions, and
have had these answered satisfactorily. I agree to/for my child _______________________________ to
take part in the above study. (print name of child)
In addition,
I give consent for my/my child’s data and samples to be shipped and stored overseas
I give consent for my/my child’s data and samples to be retained and used in future research
studies, including genetic studies, if approved by an ethics committee.
Date _______________________________
Date _______________________________
20 Cambodia, 2017
For patients who cannot read or sign the consent form, they can include their thumbprint in the
following box to indicate their consent.
I cannot read but the investigator/study staff have read the information in this informed consent form to
me and I have fully understood their explanation. Therefore, I provide my thumbprint to indicate my
voluntary consent to/for my child _______________________________ to take part in the above study.
(print name of child)
Date _______________________________
Right thumbprint of
patient
Date _______________________________
21 Cambodia, 2017
Appendix 2: Study gantt chart
Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar
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Long Case Record Form: Cambodia PSK
Have you visited the forest in the previous 2 months? YES NO I live in the forest
Did you frequently travel to another village/town/city for a purpose other than work / school? YES NO
If yes: Why did you travel? ………..………………………………………………..
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How many times did you go in the last 2 months? |___I___| total times How long did you stay in total? |___I___|
nights
Where did you go? Village / Phum ……………………….. Commune / Sangkat ………..……………….
District / Srok / Khan ………..………………. Province / Khaet ………..……………….
Other than this regular travel, have you been to another village/town/city in this country in the past 2
months?
YES NO
If yes, please provide more information below and on the next page:
Trip 1: When did you go? 1-7 days ago 8-14 days ago 15-30 days ago 31-60 days ago
How long did you stay? |___I___| nights
Where did you go? Village / Phum ……………………….. Commune / Sangkat ………..……………….
District / Srok / Khan ………..………………. Province / Khaet ………..……………….
Trip 2: When did you go? 1-7 days ago 8-14 days ago 15-30 days ago 31-60 days ago
How long did you stay? |___I___| nights
Where did you go? Village / Phum ……………………….. Commune / Sangkat ………..……………….
District / Srok / Khan ………..………………. Province / Khaet ………..……………….
Trip 3: When did you go? 1-7 days ago 8-14 days ago 15-30 days ago 31-60 days ago
How long did you stay? |___I___| nights
Where did you go? Village / Phum ……………………….. Commune / Sangkat ………..……………….
District / Srok / Khan ………..………………. Province / Khaet ………..……………….
Have you been to another country between 2 months and 4 years ago? YES NO
If yes, how many times did you go to another country in this period? |___I___|
Which countries have you been to? Thailand Lao PDR Other – please specify:…………………………..
For the two longest trips:
Trip 1:
When did you go? 2-6 months ago 6-12 months ago 1-2 years ago 2-3 years ago 3-4 years ago
How long did you stay? |___I___I___| nights
Where did you go? Village / Town / City: ………………………... District / County: ……………………….
Province: ………..……………………. Country: ………..…………………….
Trip 2:
When did you go? 2-6 months ago 6-12 months ago 1-2 years ago 2-3 years ago 3-4 years ago
How long did you stay? |___I___I___| nights
Where did you go? Village / Town / City: ………………………... District / County: ……………………….
Province: ………..……………………. Country: ………..…………………….
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If you have any additional comments on your travel, please add them here: ……………………………………….
……………………………………………………………………………………………………………………………………….
……………………………………………………………………………………………………………………………………….
Do you use a mobile phone? YES NO Do you own a mobile phone? YES NO
If yes to either of these:
Is it a smartphone? YES NO Don’t know
Do you have internet on the phone? YES NO Don’t know
Who is your mobile phone provider? ……………………………….
How many people do you regularly share the mobile phone with? |___I___|
How many days per week do you carry a mobile phone with you? |___| days
How many mobile phone SIM cards do you own? |___I___|
How often do you use the mobile phone? Several times per day Daily Weekly Less
Do you change SIM cards if you travel to another country? YES NO
PARASITE GENOTYPING
|___I___|___I___|___I___|
Place
sticker
here:
- 27 - Cambodia, 2012
- 28 - Cambodia, 2012
Short Case Record Form: Cambodia PSK
Study Code |___I___| |___I___I___I___|
TRAVEL ABROAD:
Have you been to another country in the past 4 years? YES NO
If yes, how many times did you go to another country in this period? |___I___|
Which countries have you been to? Thailand Lao PDR Other – please specify:…………………………..
For the two most recent trips:
Trip 1:
When did you go? <2 months ago 2-6 months ago 6-12 months ago
1-2 years ago 2-3 years ago 3-4 years ago
How long did you stay? |___I___I___| nights
Where did you go? Village / Town / City: ………………………... District / County: ……………………….
Province: ………..……………………. Country: ………..…………………….
Trip 2:
When did you go? <2 months ago 2-6 months ago 6-12 months ago
1-2 years ago 2-3 years ago 3-4 years ago
How long did you stay? |___I___I___| nights
Where did you go? Village / Town / City: ………………………... District / County: ……………………….
Province: ………..……………………. Country: ………..…………………….
PARASITE GENOTYPING
Sample collected for parasite genotyping Sample barcode number: Place
Fingerprick: Yes No Unable to say sticker
Venepuncture: Yes No Unable to say |___I___|___I___|___I___| here:
- 29 - Cambodia, 2012