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Artemis (protein)

Artemis is a protein that in humans


is encoded by the DCLRE1C (DNA
DCLRE1C
cross-link repair 1C) gene.[5][6] Available structures
PDB Ortholog search: PDBe (https://www.ebi.ac.uk/pdbe/search
Results.html?display=both&term=Q8K4J0%20or%20Q96SD
Contents 1%20or%20X6R9W9) RCSB (http://www.rcsb.org/pdb/searc
h/smartSubquery.do?smartSearchSubtype=UpAccessionId
Function
Query&accessionIdList=Q8K4J0,Q96SD1,X6R9W9)
Immune response
Repair of DNA breaks List of PDB id codes

Clinical significance
3W1B (https://www.rcsb.org/structure/3W1B), 3W1G
Interactions (https://www.rcsb.org/structure/3W1G), 4HTP (https://
References www.rcsb.org/structure/4HTP)
Further reading
Identifiers
External links
Aliases DCLRE1C (https://www.genenames.org/data/gene-symb
ol-report/#!/hgnc_id/17642), A-SCID, DCLREC1C, RS-
Function SCID, SCIDA, SNM1C, DNA cross-link repair 1C
External OMIM: 605988 (https://omim.org/entry/605988) MGI:
Artemis is a nuclear protein that is IDs 2441769 (http://www.informatics.jax.org/marker/MGI:244
involved in V(D)J recombination and 1769) HomoloGene: 32547 (https://www.ncbi.nlm.nih.go
DNA repair. The protein has
v/entrez/query.fcgi?cmd=Retrieve&db=homologene&dopt
endonuclease activity on 5' and 3'
=HomoloGene&list_uids=32547) GeneCards: DCLRE1C
overhangs and hairpins when
complexed with PRKDC.[7] (https://www.genecards.org/cgi-bin/carddisp.pl?gene=DC
LRE1C)

Gene location (Human)


Immune response

Artemis plays an essential role in


V(D)J recombination, the process by
which B cell antibody genes and T
cell receptor genes are assembled
from individual V (variable), D
(diversity), and J (joining) Chr. Chromosome 10 (human)[1]
segments.[8] For example, in joining
a V segment to a D segment, the
RAG (recombination activating
gene) nuclease cuts both DNA
strands adjacent to a V segment and Band 10p13 Start 14,897,359 bp[1]
adjacent to a D segment. The End 14,954,432 bp[1]
intervening DNA between the V and
D segments is ligated to form a Gene location (Mouse)
circular DNA molecule that is lost
from the chromosome. At each of the
two remaining ends, called the
coding ends, the two strands of DNA
are joined to form a hairpin structure.
Artemis nuclease, in a complex with
the DNA-dependent protein kinase
(DNA‑PK), binds to these DNA Chr. Chromosome 2 (mouse)[2]
ends and makes a single cut near the
tip of the hairpin. The exposed 3'
termini are subject to deletion and
addition of nucleotides by a variety
of exonucleases and DNA Band 2|2 A1 Start 3,424,131 bp[2]
polymerases, before the V and D End 3,464,130 bp[2]
segments are ligated to restore the
integrity of the chromosome. The RNA expression pattern
exact site of cleavage of the hairpin
by Artemis is variable, and this
variability, combined with random
nucleotide deletion and addition,
confers extreme diversity upon the
resulting antibody and T-cell receptor
genes, thus allowing the immune
system to mount an immune response
to virtually any foreign antigen.[9] In
Artemis-deficient individuals, V(D)J
recombination is blocked because the
hairpin ends cannot be opened, and
so no mature B or T cells are
produced, a condition known as
severe combined immune deficiency
(SCID). Artemis was first identified
as the gene defective in a subset of
SCID patients that were unusually
sensitive to radiation.

More reference expression data (http://biogps.org/gene/64421/)


Repair of DNA breaks
Gene ontology
Cells deficient in Artemis are more
Molecular • 5'-3' exonuclease activity (http://amigo.geneontolog
sensitive than normal cells to
function y.org/amigo/term/GO:0008409)
X‑rays[5] and to chemical agents that
induce double-strand breaks • 5'-3' exodeoxyribonuclease activity (http://amigo.gen
(DSBs), [10] and they show a higher eontology.org/amigo/term/GO:0035312)
incidence of chromosome breaks • damaged DNA binding (http://amigo.geneontology.or
following irradiation.[11] Direct g/amigo/term/GO:0003684)
measurement of DSBs by pulsed- • single-stranded DNA endodeoxyribonuclease activity
field electrophoresis indicates that in (http://amigo.geneontology.org/amigo/term/GO:00000
Artemis-deficient cells 75-90% of 14)
DSBs are repaired rapidly, just as in
• GO:0001948 protein binding (http://amigo.geneontol
normal cells. However, the remaining
10-20% of DSBs that are repaired ogy.org/amigo/term/GO:0005515,)
more slowly (2-24 hr) in normal • nuclease activity (http://amigo.geneontology.org/ami
cells, are not repaired at all in go/term/GO:0004518)
Artemis-deficient cells.[12] Repair of • endonuclease activity (http://amigo.geneontology.or
these presumably difficult-to-rejoin g/amigo/term/GO:0004519)
breaks also requires several other • exonuclease activity (http://amigo.geneontology.org/
proteins, including the
amigo/term/GO:0004527)
Mre11/Rad50/NBS1 complex, the
ataxia telangiectasia mutated ATM • hydrolase activity (http://amigo.geneontology.org/ami
kinase, and 53BP1. Because Artemis go/term/GO:0016787)
can remove damaged ends from Cellular • nonhomologous end joining complex (http://amigo.g
DNA,[10] it has been proposed that component eneontology.org/amigo/term/GO:0070419)
these DSBs are those whose • nuclear chromosome, telomeric region (http://amigo.
damaged ends require trimming by
geneontology.org/amigo/term/GO:0000784)
Artemis. However, evidence that
both ATM and Artemis are • cell nucleus (http://amigo.geneontology.org/amigo/te
specifically required for repair of rm/GO:0005634)
DSBs in heterochromatin,[13][14] has • nucleoplasm (http://amigo.geneontology.org/amigo/t
called this interpretation into erm/GO:0005654)
question. • Golgi apparatus (http://amigo.geneontology.org/amig
o/term/GO:0005794)
Artemis functions in the repair of
DNA double-strand breaks that arise Biological • response to ionizing radiation (http://amigo.geneonto
by induced oxidative reactions, or by process logy.org/amigo/term/GO:0010212)
endogenous reactions.[15] Such • DNA recombination (http://amigo.geneontology.org/a
DNA repair occurs in migo/term/GO:0006310)
heterochromatin as well as in • adaptive immune response (http://amigo.geneontolo
euchromatin. gy.org/amigo/term/GO:0002250)
• interstrand cross-link repair (http://amigo.geneontolo
Clinical significance gy.org/amigo/term/GO:0036297)
• protection from non-homologous end joining at
Mutations in this gene cause telomere (http://amigo.geneontology.org/amigo/term/
Athabascan-type severe combined GO:0031848)
immunodeficiency (SCIDA).[16] • immune system process (http://amigo.geneontology.
org/amigo/term/GO:0002376)
Interactions • chromosome organization (http://amigo.geneontolog
y.org/amigo/term/GO:0051276)
DCLRE1C has been shown to • cellular response to DNA damage stimulus (http://am
interact with DNA-PKcs.[17] igo.geneontology.org/amigo/term/GO:0006974)
• V(D)J recombination (http://amigo.geneontology.org/
References amigo/term/GO:0033151)
• B cell differentiation (http://amigo.geneontology.org/a
1. GRCh38: Ensembl release
migo/term/GO:0030183)
89: ENSG00000152457 (htt
p://May2017.archive.ensemb • double-strand break repair via nonhomologous end
l.org/Homo_sapiens/Gene/Su joining (http://amigo.geneontology.org/amigo/term/G
mmary?db=core;g=ENSG000 O:0006303)
00152457) - Ensembl, May • telomere maintenance (http://amigo.geneontology.or
2017
g/amigo/term/GO:0000723)
• nucleic acid phosphodiester bond hydrolysis (http://a
migo.geneontology.org/amigo/term/GO:0090305)
• double-strand break repair (http://amigo.geneontolo
2. GRCm38: Ensembl release gy.org/amigo/term/GO:0006302)
89: ENSMUSG00000026648 • DNA repair (http://amigo.geneontology.org/amigo/ter
(http://May2017.archive.ense m/GO:0006281)
mbl.org/Mus_musculus/Gene/
Summary?db=core;g=ENSM Sources:Amigo (http://amigo.geneontology.org/) / QuickGO (https://
USG00000026648) - www.ebi.ac.uk/QuickGO/)
Ensembl, May 2017
Orthologs
3. "Human PubMed Reference:"
(https://www.ncbi.nlm.nih.gov/ Species Human Mouse
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Link&LinkName=gene_pubm 64421 (https://www.nc 227525 (https://www.ncb
ed&from_uid=64421).
bi.nlm.nih.gov/entrez/q i.nlm.nih.gov/entrez/quer
National Center for
Biotechnology Information, uery.fcgi?db=gene&c y.fcgi?db=gene&cmd=retr
U.S. National Library of md=retrieve&dopt=def ieve&dopt=default&list_u
Medicine. ault&list_uids=64421 ids=227525&rn=1)
&rn=1)
4. "Mouse PubMed Reference:"
(https://www.ncbi.nlm.nih.gov/
sites/entrez?db=gene&cmd= Ensembl
Link&LinkName=gene_pubm ENSG00000152457 ENSMUSG00000026648
ed&from_uid=227525). (http://www.ensembl.o (http://www.ensembl.org/
National Center for rg/Homo_sapiens/gen Mus_musculus/genevie
Biotechnology Information, eview?gene=ENSG00 w?gene=ENSMUSG000
U.S. National Library of 000152457;db=core) 00026648;db=core)
Medicine.
5. Moshous D, Callebaut I, de
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Deist F, Tezcan I, Sanal O, uniprot.org/uniprot/Q9 prot.org/uniprot/Q8K4J0)
Bertrand Y, Philippe N, 6SD1)
Fischer A, de Villartay JP
(May 2001). "Artemis, a novel RefSeq NM_001033855 (https:// NM_001110214 (https://w
DNA double-strand break
(mRNA) www.ncbi.nlm.nih.gov/ ww.ncbi.nlm.nih.gov/entre
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severe combined immune NM_001033855) 110214)
deficiency". Cell. 105 (2): NM_001033857 (https:// NM_146114 (https://www.n
177–86. doi:10.1016/S0092- www.ncbi.nlm.nih.gov/ cbi.nlm.nih.gov/entrez/vie
8674(01)00309-9 (https://doi.
entrez/viewer.fcgi?val= wer.fcgi?val=NM_146114)
org/10.1016%2FS0092-867
4%2801%2900309-9). NM_001033857) NM_175683 (https://www.n
PMID 11336668 (https://pubm NM_001033858 (https:// cbi.nlm.nih.gov/entrez/vie
ed.ncbi.nlm.nih.gov/1133666 www.ncbi.nlm.nih.gov/ wer.fcgi?val=NM_175683)
8). entrez/viewer.fcgi?val= NM_001302674 (https://w
NM_001033858) ww.ncbi.nlm.nih.gov/entre
NM_001289076 (https:// z/viewer.fcgi?val=NM_001
www.ncbi.nlm.nih.gov/ 302674)
entrez/viewer.fcgi?val= NM_001302684 (https://w
NM_001289076) ww.ncbi.nlm.nih.gov/entre
NM_001289077 (https:// z/viewer.fcgi?val=NM_001
www.ncbi.nlm.nih.gov/ 302684)
entrez/viewer.fcgi?val=
NM_001289077)
6. Li L, Drayna D, Hu D, NM_001362903 (https://
Hayward A, Gahagan S, NM_001289078 (http www.ncbi.nlm.nih.gov/ent
Pabst H, Cowan MJ (Mar s://www.ncbi.nlm.nih.g rez/viewer.fcgi?val=NM_
1998). "The gene for severe ov/entrez/viewer.fcgi? 001362903)
combined immunodeficiency val=NM_001289078) NM_001362904 (https://
disease in Athabascan- NM_001289079 (http www.ncbi.nlm.nih.gov/ent
speaking Native Americans is s://www.ncbi.nlm.nih.g rez/viewer.fcgi?val=NM_
located on chromosome 10p" ov/entrez/viewer.fcgi? 001362904)
(https://www.ncbi.nlm.nih.gov/ val=NM_001289079)
pmc/articles/PMC1376812). NM_022487 (https://w
Am. J. Hum. Genet. 62 (1): ww.ncbi.nlm.nih.gov/e
136–44. doi:10.1086/301688
ntrez/viewer.fcgi?val=
(https://doi.org/10.1086%2F3
NM_022487)
01688). PMC 1376812 (http
s://www.ncbi.nlm.nih.gov/pm NM_001350965 (http
c/articles/PMC1376812). s://www.ncbi.nlm.nih.g
PMID 9443881 (https://pubme ov/entrez/viewer.fcgi?
d.ncbi.nlm.nih.gov/9443881). val=NM_001350965)
7. "Protein Knowledgebase: NM_001350966 (http
Gene DCLRE1C - DNA s://www.ncbi.nlm.nih.g
cross-link repair 1C protein ov/entrez/viewer.fcgi?
(Protein artemis)" (https://ww val=NM_001350966)
w.uniprot.org/uniprot/Q96SD NM_001350967 (http
1). Retrieved June 2, 2011. s://www.ncbi.nlm.nih.g
8. de Villartay JP (2009). "V(D)J ov/entrez/viewer.fcgi?
recombination deficiencies". val=NM_001350967)
Adv. Exp. Med. Biol.
Advances in Experimental RefSeq NP_001029027 (https:// NP_001103684 (https://ww
Medicine and Biology. 650: (protein) www.ncbi.nlm.nih.gov/ w.ncbi.nlm.nih.gov/entrez/
46–58. doi:10.1007/978-1-
4419-0296-2_4 (https://doi.or entrez/viewer.fcgi?val= viewer.fcgi?val=NP_00110
g/10.1007%2F978-1-4419-02 NP_001029027) 3684)
96-2_4). ISBN 978-1-4419- NP_001029029 (https:// NP_001289603 (https://ww
0295-5. PMID 19731800 (http www.ncbi.nlm.nih.gov/ w.ncbi.nlm.nih.gov/entrez/
s://pubmed.ncbi.nlm.nih.gov/1 entrez/viewer.fcgi?val= viewer.fcgi?val=NP_00128
9731800).
NP_001029029) 9603)
9. Lu H, Schwarz K, Lieber MR NP_001029030 (https:// NP_001289613 (https://ww
(2007). "Extent to which
hairpin opening by the www.ncbi.nlm.nih.gov/ w.ncbi.nlm.nih.gov/entrez/
Artemis:DNA-PKcs complex entrez/viewer.fcgi?val= viewer.fcgi?val=NP_00128
can contribute to junctional NP_001029030) 9613)
diversity in V(D)J NP_001276005 (https:// NP_666226 (https://www.n
recombination" (https://www.n www.ncbi.nlm.nih.gov/ cbi.nlm.nih.gov/entrez/vie
cbi.nlm.nih.gov/pmc/articles/P entrez/viewer.fcgi?val= wer.fcgi?val=NP_666226)
MC2175297). Nucleic Acids
Res. 35 (20): 6917–23. NP_001276005) NP_783614 (https://www.n
doi:10.1093/nar/gkm823 (http NP_001276006 (https:// cbi.nlm.nih.gov/entrez/vie
s://doi.org/10.1093%2Fnar%2 www.ncbi.nlm.nih.gov/ wer.fcgi?val=NP_783614)
Fgkm823). PMC 2175297 (htt entrez/viewer.fcgi?val=
ps://www.ncbi.nlm.nih.gov/pm NP_001276006) NP_001349832 (https://w
c/articles/PMC2175297). ww.ncbi.nlm.nih.gov/entr
PMID 17932067 (https://pubm ez/viewer.fcgi?val=NP_0
ed.ncbi.nlm.nih.gov/1793206 NP_001276007 (http
s://www.ncbi.nlm.nih.g 01349832)
7). NP_001349833 (https://w
ov/entrez/viewer.fcgi?
10. Povirk LF, Zhou T, Zhou R, val=NP_001276007) ww.ncbi.nlm.nih.gov/entr
Cowan MJ, Yannone SM NP_001276008 (http ez/viewer.fcgi?val=NP_0
(February 2007). "Processing s://www.ncbi.nlm.nih.g 01349833)
of 3'-phosphoglycolate- ov/entrez/viewer.fcgi?
terminated DNA double val=NP_001276008)
strand breaks by Artemis NP_071932 (https://w
nuclease" (https://doi.org/10.1 ww.ncbi.nlm.nih.gov/e
074/jbc.M607745200). J. Biol. ntrez/viewer.fcgi?val=
Chem. 282 (6): 3547–58. NP_071932)
doi:10.1074/jbc.M607745200 NP_001337894 (http
(https://doi.org/10.1074%2Fjb
s://www.ncbi.nlm.nih.g
c.M607745200).
ov/entrez/viewer.fcgi?
PMID 17121861 (https://pubm
ed.ncbi.nlm.nih.gov/1712186 val=NP_001337894)
1). NP_001337895 (http
s://www.ncbi.nlm.nih.g
11. Deckbar D, Birraux J,
Krempler A, Tchouandong L, ov/entrez/viewer.fcgi?
Beucher A, Walker S, Stiff T, val=NP_001337895)
Jeggo P, Löbrich M (March NP_001337896 (http
2007). "Chromosome s://www.ncbi.nlm.nih.g
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release" (http://sro.sussex.ac. val=NP_001337896)
uk/1851/1/deckbar_2007.pdf)
(PDF). J. Cell Biol. 176 (6): Location Chr 10: 14.9 – 14.95 Mb Chr 2: 3.42 – 3.46 Mb (http
749–55. (UCSC) (https://genome.ucsc.edu/ s://genome.ucsc.edu/cgi-bin/
doi:10.1083/jcb.200612047
cgi-bin/hgTracks?org=Hu hgTracks?org=Mouse&db=m
(https://doi.org/10.1083%2Fjc
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PMID 17353355 (https://pubm [3] [4]
PubMed
ed.ncbi.nlm.nih.gov/1735335
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Doherty A, Smith GC, Recio


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PMID 11955432 (https://pubm
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Further reading
Dudásová Z, Chovanec M (2003). "Artemis, a novel guardian of the genome". Neoplasma. 50
(5): 311–8. PMID 14628082 (https://pubmed.ncbi.nlm.nih.gov/14628082).
Adams MD, Kerlavage AR, Fleischmann RD, Fuldner RA, Bult CJ, Lee NH, Kirkness EF,
Weinstock KG, Gocayne JD, White O (1995). "Initial assessment of human gene diversity and
expression patterns based upon 83 million nucleotides of cDNA sequence" (http://www.columb
ia.edu/itc/biology/pollack/w4065/client_edit/readings/nature377_3.pdf) (PDF). Nature. 377
(6547 Suppl): 3–174. PMID 7566098 (https://pubmed.ncbi.nlm.nih.gov/7566098).
Wood RD, Mitchell M, Sgouros J, Lindahl T (2001). "Human DNA repair genes" (https://doi.org/
10.1126/science.1056154). Science. 291 (5507): 1284–9. doi:10.1126/science.1056154 (http
s://doi.org/10.1126%2Fscience.1056154). PMID 11181991 (https://pubmed.ncbi.nlm.nih.gov/11
181991).
Ma Y, Pannicke U, Schwarz K, Lieber MR (2002). "Hairpin opening and overhang processing
by an Artemis/DNA-dependent protein kinase complex in nonhomologous end joining and
V(D)J recombination". Cell. 108 (6): 781–94. doi:10.1016/S0092-8674(02)00671-2 (https://doi.o
rg/10.1016%2FS0092-8674%2802%2900671-2). PMID 11955432 (https://pubmed.ncbi.nlm.ni
h.gov/11955432).
Li L, Moshous D, Zhou Y, Wang J, Xie G, Salido E, Hu D, de Villartay JP, Cowan MJ (2002). "A
founder mutation in Artemis, an SNM1-like protein, causes SCID in Athabascan-speaking
Native Americans" (https://doi.org/10.4049/jimmunol.168.12.6323). J. Immunol. 168 (12): 6323–
9. doi:10.4049/jimmunol.168.12.6323 (https://doi.org/10.4049%2Fjimmunol.168.12.6323).
PMID 12055248 (https://pubmed.ncbi.nlm.nih.gov/12055248).
Callebaut I, Moshous D, Mornon JP, de Villartay JP (2002). "Metallo-beta-lactamase fold within
nucleic acids processing enzymes: the beta-CASP family" (https://www.ncbi.nlm.nih.gov/pmc/a
rticles/PMC134238). Nucleic Acids Res. 30 (16): 3592–601. doi:10.1093/nar/gkf470 (https://doi.
org/10.1093%2Fnar%2Fgkf470). PMC 134238 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC
134238). PMID 12177301 (https://pubmed.ncbi.nlm.nih.gov/12177301).
Noordzij JG, Verkaik NS, van der Burg M, van Veelen LR, de Bruin-Versteeg S, Wiegant W,
Vossen JM, Weemaes CM, de Groot R, Zdzienicka MZ, van Gent DC, van Dongen JJ (2003).
"Radiosensitive SCID patients with Artemis gene mutations show a complete B-cell
differentiation arrest at the pre-B-cell receptor checkpoint in bone marrow" (http://repub.eur.nl/p
ub/8235). Blood. 101 (4): 1446–52. doi:10.1182/blood-2002-01-0187 (https://doi.org/10.1182%
2Fblood-2002-01-0187). PMID 12406895 (https://pubmed.ncbi.nlm.nih.gov/12406895).
Moshous D, Pannetier C, de Chasseval R, le Deist F, Cavazzana-Calvo M, Romana S,
Macintyre E, Canioni D, Brousse N, Fischer A, Casanova JL, de Villartay JP (2003). "Partial T
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External links
Overview of all the structural information available in the PDB for UniProt: Q96SD1 (https://ww
w.ebi.ac.uk/pdbe/pdbe-kb/proteins/Q96SD1) (Protein artemis) at the PDBe-KB.

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