Professional Documents
Culture Documents
Vishal Sharma, Uma Debi, Harshal S Mandavdhare, and Kaushal K Prasad, Postgraduate Institute of Medical Education and Research,
Chandigarh, India
© 2018 Elsevier Inc. All rights reserved.
Gastrointestinal Tuberculosis 2
Epidemiology 2
Pathology and Pathogenesis 2
Definition and Nomenclature 2
Clinical Manifestations Including Natural History 3
Intestinal tuberculosis (ITB) 3
Other forms of luminal tuberculosis 4
Visceral tuberculosis 7
Diagnosis and Differential Diagnosis 8
Intestinal tuberculosis: diagnosis 8
Intestinal tuberculosis: differential diagnosis 9
Peritoneal tuberculosis: diagnosis 10
Peritoneal tuberculosis: differential diagnosis 10
Treatment and Follow-up 11
Prevention and Prognosis 11
Guidelines 11
Abdominal Mycobacterium avium-intracellulare (MAI) Infection 12
Definition 12
Epidemiology 12
Pathobiology 13
Clinical Manifestations Including Natural History 13
Diagnosis and Differential Diagnosis 13
Treatment 13
Prevention (Primary and Secondary and Risk Factors) 13
Prognosis 13
Guidelines 14
Summary 14
References 14
Further Reading 14
Glossary
Abdominal tuberculosis Term which describes a form of extrapulmonary tuberculosis that could involve the various organs of
the abdominal cavity like the small or large intestines, peritoneum, lymph nodes, and visceral organs, singularly or in
combination.
Adenosine deaminase It is an enzyme involved in purine metabolism and has two isoforms. ADA is produced by many cells
and also by activated lymphocytes. Elevated levels in pleural and peritoneal fluid may suggest underlying tuberculosis.
Clinically diagnosed abdominal tuberculosis It is a case of abdominal tuberculosis where the diagnosis is based on strong
clinical suspicion, with suggestive features on imaging, histology (noncaseating granulomas, chronic inflammatory changes),
cytology, and biochemistry (elevated ascitic adenosine deaminase), and with an objective response to antitubercular therapy
(mucosal healing or resolution of ascites) in the absence of microbiological evidence.
Confirmed case of abdominal tuberculosis It is a case of abdominal tuberculosis where there is objective demonstration of
presence of acid fast bacilli either on histopathology (with or without caseation necrosis), culture or polymerase chain reaction
(PCR) based assays.
Early mucosal healing The documentation of mucosal healing at the end of 2 months during the course of standard
antitubercular therapy.
Gastrointestinal tuberculosis It is the form of extrapulmonary tuberculosis that involves the esophagus and the stomach apart
from involvement of the abdominal cavity.
Intestinal tuberculosis It is the subtype of abdominal tuberculosis that involves the intestine and can present as a ulcerative
form with diarrhea, and stricturing form or hypertrophic form with abdominal pain and/or intestinal obstruction.
Mucosal healing Healing of ulcers in patients with intestinal tuberculosis with antitubercular therapy. It is an objective way of
documenting response to antitubercular therapy especially in clinically diagnosed cases of intestinal tuberculosis.
Peritoneal tuberculosis It is the subtype of abdominal tuberculosis that involves the peritoneum and could present as a wet
type with ascites, dry type with peritoneal and omental thickening, adhesions or as a cocoon.
Tubercular abdominal cocoon It is a special type of peritoneal tuberculosis where in matted and clumped intestinal loops are
encircled by a thickened peritoneal membrane.
Mycobacterial diseases of the abdomen broadly could be due to infection by the Mycobacterium tuberculosis (Tuberculosis) or
nontuberculous mycobacteria (NTMs). M. tuberculosis complex includes the organisms M. tuberculosis, Mycobacterium bovis, Myco-
bacterium africanum, and Mycobacterium microti. Of these M. tuberculosis is responsible for most of the cases of abdominal tuberculosis
which is an important form of extrapulmonary tuberculosis. With increase in human immunodeficiency virus (HIV) infection and
the resulting acquired immune deficiency syndrome (AIDS), clinicians also encounter infections with the NTMs more frequently
which are difficult to diagnose especially, because of existing coinfections and moreover are difficult to treat. Of the NTMs the
Mycobacterium avium complex (MAC) is a major concern and includes the species including M. avium, Mycobacterium intracellulare,
and Mycobacterium chimaera.
Gastrointestinal Tuberculosis
Abdominal tuberculosis is a common clinical condition in the tropical countries but is often difficult to diagnose as it can mimic a
number of other conditions. Intestinal involvement by tuberculosis was recognized long back and Hippocrates stated that
development of diarrhea in tubercular cases portended a fatal outcome. With the availability of effective treatment, mortality due
to abdominal tuberculosis has become uncommon. The disease is characterized by a varied clinical presentation which may be
confused with a number of other conditions. Further the low sensitivity of microbiological and histological testing adds to the
difficulty in the diagnosis. While all efforts must be made to achieve a histological or microbiological diagnosis, often the condition
has to be treated empirically. The evaluation of patients suspected to have abdominal tuberculosis should also seek to exclude the
other differential diagnosis.
Epidemiology
Tuberculosis is an important concern for clinicians across the globe and is estimated to infect around 30% of the population.
Tuberculosis accounted for around 1.7 million deaths in 2016 most of which occurred in lower and middle income countries
especially India, Indonesia, and China. The threat associated with tuberculosis has been heightened by the emergence of multidrug
resistant (MDR: resistant to rifampin and isoniazid) and extensively drug resistant strains (XDR: MDR plus resistance to at least one
fluoroquinolone and one injectable drug). While lung is the most common site of involvement, extrapulmonary tuberculosis
(EPTB) is also an important concern especially in the immunocompromised individuals (Sharma and Bhatia, 2004a). The diagnosis
of EPTB is difficult because of low sensitivity of microbiological tests and the difficulty in achieving a tissue diagnosis. Abdominal
tuberculosis is an important cause of extrapulmonary tuberculosis and accounts for 12.8% of all EPTB cases (Cherian et al., 2017).
In fact it was the third most common site of EPTB after lymphnodal and pleural effusion in a study based on Revised National
Tuberculosis Control Program in three Indian districts (Cherian et al., 2017).
Peritoneal
Wet-ascitic type
Dry and fibrotic type
Mixed (ascitic and fibrotic)
Tubercular abdominal cocoon (sclerosing encapsulating peritonitis)
Luminal
Intestinal
Ulcerative
Hypertrophic
Stricturing
Esophageal
Gastro-duodenal
Lymph-nodal tuberculosis
Visceral
Hepatic tuberculosis
Splenic tuberculosis
Pancreatic tuberculosis
Gall bladder and biliary tuberculosis
Paustian criteria (Paustian and Abdominal (i)Histology: tubercles with caseation necrosis
Bockus, 1959) tuberculosis (ii)Typical surgical findings with mesenteric nodes showing evidence of tuberculosis
(iii)Animal inoculation or the culture growth of M. tuberculosis
(iv) Acid fast bacilli in the lesion
Logan’s modification (Logan, 1969) Abdominal (i)Tubercle bacilli seen on microscopy/culture
tuberculosis (ii)Caseating giant cell lesions with the clinico-radiological evidence
(iii)Probable TB: granuloma similar to “sarcoid” reaction of Crohn’s disease with the clinico-
radiological evidence of tuberculosis elsewhere, and response to ATT
INDEX-TB definition (Sharma et al., Extrapulmonary Confirmed case: Microbiological positivity (positive microscopy, culture or validated PCR)
2017b) tuberculosis Clinically diagnosed case: In patients with negative microbiological tests but strong clinical
suspicion and other evidence (imaging, histology, cytology, biochemical or response to ATT)
Suggested criteria (Sharma et al., Abdominal Confirmed case: Microbiological positivity (positive microscopy, culture or validated PCR) or
2017a) tuberculosis caseating granuloma
Clinically diagnosed case: In patients with negative microbiological tests but strong clinical
suspicion and other evidence (imaging, histology, cytology, biochemical or response to ATT)
Sharma, Singh and Mandavdhare Tubercular Confirmed TAC: Microbiological positivity or caseating granulomas
criteria (Sharma et al., 2017d) abdominal cocoon Clinically diagnosed TAC: Clinico-radiological picture with supportive biochemical, cytological,
(TAC) or histological evidence
Diagnosis of cocoon on basis of demonstration of membrane on surgery or imaging
Fig. 1 Well-defined multiple epitheloid granuloma with Langhan’s giant cell (H&E X 20).
Gastroduodenal TB
Gastroduodenal region is another uncommon site of tuberculosis (Fig. 4) and the presence of gastric acid seems to play a protective
role. The occurrence of tuberculosis in this region may present with dyspeptic symptoms, abdominal pain, gastric outlet
Abdominal Tuberculosis and Other Mycobacterial Infections 5
Fig. 2 Patterns of intestinal tuberculosis. (A) Showing circumferential ulceration, (B) multiple cecal ulcers and ileocecal involvement, (C) ulcer with stricture in
terminal ileum, and (D) surgical specimen of resected hypertrophic tuberculosis. Courtesy Dr Harjeet Singh M. Ch., Chandigarh.
Spalgais et al. Sharma et al. Afridi et al. Chalya et al. Chaudhary Dauda et al. Khan et al. Gilinsky et al.
(2017) (2017a) (2016) (2013) et al. (2016) (2010) (2001) (1983)
(n ¼ 200) (n ¼ 112) (n ¼ 100) (n ¼ 256) (n ¼ 756) (n ¼ 117) (n ¼ 135) (n ¼ 125)
{n(%)} {n(%)} {n(%)} {n(%)} {n(%)} {n(%)} {n(%)} {n(%)}
obstruction, failure to thrive (in pediatric age group), hematemesis and constitutional symptoms. It can closely mimic other gastric
diseases like peptic ulcer disease and malignancy. The endoscopic findings in this condition could include gastric ulcers, nodularity,
polypoidal lesions, submucosal bulge, luminal narrowing, sinus or fistulae, etc. While older reports suggest that endoscopic
diagnosis is difficult and the condition is often diagnosed after surgical resection, use of well (bite on bite biopsy) biopsies and
6 Abdominal Tuberculosis and Other Mycobacterial Infections
Fig. 3 Esophageal ulcer in a patient with HIV which turned out to be due to tuberculosis.
Fig. 4 Gastroduodenal tuberculosis. (A) Double contrast barium meal shows multiple erosions in stomach and duodenum, and (B) CT showing duodenal mural
thickening with luminal narrowing.
endoscopic mucosal resection could improve the diagnostic yield of endoscopy. Apart from the use of ATT, endoscopic dilatation
may be required in patients having gastric outlet obstruction.
Peritoneal tuberculosis
Peritoneal tuberculosis is another common pattern of involvement with abdominal tuberculosis and is usually characterized by
ascites formation. The peritoneal involvement may be related to the hematogenous spread from pulmonary lesions, spread from
local lesions in the intestine or the fallopian tubes (Sanai and Bzeizi, 2005). However, dry forms of peritoneal tuberculosis are also
recognized which may have little or no ascites and may be associated with peritoneal thickening, adhesions, omental, and
mesenteric thickening. The clinical features in a patient may be related to the pattern of underlying involvement. Although various
terms like dry-plastic and fixed-fibrotic are in vogue for the dry form of peritoneal tuberculosis, there is a considerable overlap
amongst these two patterns (Sanai and Bzeizi, 2005; Sharma and Bhatia, 2004a). Another special pattern of involvement is
abdominal cocoon (or sclerosing encapsulating peritonitis) which is characterized by presence of a membranous sac around the
intestinal loops resulting in features of pain and intestinal obstruction (Sharma et al., 2017c,d). Rarely, chylous ascites could occur
with mycobacterial infections. While the usual risk factors like poor socioeconomic status, underlying immunodeficiency or
diabetes mellitus may predispose to acquisition of tuberculosis, underlying alcoholic liver disease is also recognized as a risk factor
for peritoneal tuberculosis.
The patients with wet-ascitic pattern may have abdominal distension, pain, fever, with loss of appetite and weight as the
predominant clinical features. Abdominal examination may reveal abdominal distension and presence of ascites. The classical
Abdominal Tuberculosis and Other Mycobacterial Infections 7
Fig. 5 CT images of peritoneal tuberculosis. (A) Showing massive ascites with displacement of bowel loops, (B) dry pattern with omental caking, (C) mixed pattern
with ascites and omental thickening, and (D) abdominal cocoon.
“doughy” feel on palpation is infrequent and represents a form of peritoneal tuberculosis where ascites formation is less dominant.
Imaging findings in these patients show ascites and may demonstrate peritoneal thickening and enhancement (Fig. 5A). Patients
with dry (or mixed dry–wet) involvement have abdominal pain and may develop intestinal obstruction (Fig. 5B,C). Imaging in
these patients may demonstrate ascites which could be loculated, omental and mesenteric thickening, peritoneal nodularity, etc.
Tubercular abdominal cocoon usually presents with abdominal pain, lump, and episodes of intestinal obstruction. The imaging
may demonstrate clumping of bowel loops, ascites, and various signs like cauliflower sign, concertina pattern of arrangement of
small bowel loops, and a bottle gourd sign demonstrating dilated duodenum up till the second or third part. The hallmark,
however, is the demonstration of a thick membrane which surrounds the small bowel loops (Fig. 5D).
Visceral tuberculosis
Hepatic tuberculosis
The involvement of liver by tubercular infection could occur in distinctive patterns: miliary or localized involvement. Miliary
involvement of the liver is part of disseminated tuberculosis and is characterized by diffuse hepatic involvement with tubercules
primarily involving the hepatic lobules and CT suggestive of multiple hypodense lesions. On the contrary, localized hepatic
involvement is usually associated with larger lesions which could be calcified and the infection is supposed to originate from the
gastrointestinal tract. Localized hepatic tuberculosis has also been labeled as tuberculoma or pseudotumoral pattern. Hepatic
abscess could also be a manifestation of the localized form of hepatic tuberculosis. The clinical manifestation could include fever,
hepatomegaly, loss of weight, abdominal pain, and deranged liver function tests. The elevation of alkaline phosphatase and
gamma-glutamyl transferase may be dominant liver function abnormality in diffuse involvement.
Pancreatic tuberculosis
Pancreatic tuberculosis could be a consequence of primary involvement of the pancreas or the peripancreatic lymph nodes and is an
uncommon entity. Even in regions endemic for tuberculosis, the commonest cause of a pancreatic mass is pancreatic cancer and
therefore, pancreatic tuberculosis is usually diagnosed after a Whipple’s procedure for a presumed pancreatic malignancy. This has
changed with the advent of advances in tissue acquisition and use of endoscopic ultrasound which can evaluate and sample
pancreatic lesions. Pancreatic tuberculosis could present with abdominal pain, fever, loss of weight or appetite, jaundice, biliary
obstruction, abdominal lump, etc. Imaging findings could reveal biliary or pancreatic ductal dilatation, pancreatic mass which
8 Abdominal Tuberculosis and Other Mycobacterial Infections
could involve any region of the pancreas, cystic or solid cystic lesions, lymphadenopathy, diffuse pancreatomegaly, calcifications,
and vascular involvement. None of the findings are distinctive for pancreatic tuberculosis and the diagnosis requires cytological and
microbiological testing. While jaundice usually responds with ATT, endoscopic retrograde cholangiography with biliary stenting
may be required in cases with associated cholangitis or lack of improvement in biliary obstruction.
Fig. 6 Radiological picture of intestinal tuberculosis. (A) Barium study showing ulceration and narrowing of the ileocecal junction, (B) multiple small bowel stricture
with proximal dilatation, (C) CT image showing thickening of distal ileum and caecum with narrowed terminal ileum, and (D) thickened ileocecal region.
Abdominal Tuberculosis and Other Mycobacterial Infections 9
tuberculosis include intestinal ulcers (usually transverse), stricture, pseudopolyps, ileocecal region involvement. Crohn’s disease
(CD), which is an important differential diagnosis, is usually characterized by presence of linear and serpiginous ulcer, aphthous
ulcers, skip lesions, rectal involvement, etc. (Limsrivilai et al., 2017). However, there is a considerable overlap between endoscopic
findings of the two conditions and no single finding is specific for any diagnosis.
The diagnosis of intestinal tuberculosis is often based on microbiological or histological evaluation. However, both of these are
compromised by low sensitivity for the diagnosis. Therefore, response to therapy has been suggested as an important criterion for
the diagnosis of ITB (Logan’s modification of Paustian criteria). Table 2 provides different definitions used for diagnosis of
abdominal tuberculosis. The presence of caseating granulomas, confluent granuloma, or ulcer base lined by epithelioid histiocytes
are considered to be specific in discrimination of ITB from CD (Du et al., 2014). However, the sensitivity of these findings is below
50%. Acid-fast bacilli (AFB) positivity is infrequent and culture positivity from tissue samples is compromised by low sensitivity and
high turnaround times. Recent times have seen increasing focus on molecular diagnosis of ITB. In a systematic review on the use of
IS 6110 primers for the diagnosis of ITB over CD, the pooled sensitivity was 46% and specificity was 95% (Jin et al., 2017).
Therefore, while a positive polymerase chain reaction (PCR) could be supportive of the diagnosis, a negative PCR does not exclude
ITB. Xpert MTB/RIF, which has found use in pulmonary and lymphnodal TB, has a low sensitivity (8%) for the diagnosis of
intestinal TB but could suggest underlying multidrug resistant tuberculosis (MDR-TB) (Kumar et al., 2017; Sharma et al., 2018). The
overall sensitivity and specificity of microbiological and histological tools is depicted in Table 4. Table 5 provides the features used
to discriminate ITB from CD.
Table 5 Differences between intestinal tuberculosis (ITB) and Crohn’s disease (CD)
healing with ATT in patients with a diagnostic confusion between ITB and CD suggests presence of underlying ITB (PratapMouli
et al., 2017; Sharma et al., 2018). The decline in inflammatory markers like the serum CRP levels has been shown to mimic objective
response to ATT and a lack of decline could suggest the possibility of alternative diagnosis (Sharma et al., 2017a). Use of
inflammatory markers could obviate the need for a repeat colonoscopy in subset of patients initiated on empirical ATT.
thrice to exclude peritoneal carcinomatosis. Serum and/or ascitic levels of CA125 could be elevated in peritoneal tuberculosis and
should not be used to discriminate it from peritoneal carcinomatosis (Tong et al., 2017).
Guidelines
Indian extrapulmonary tuberculosis guidelines provide recommendations for diagnosis and management of abdominal tubercu-
losis and other forms of extrapulmonary TB (INDEX TB Guidelines).
Fig. 7 Suggested clinical approach to management of abdominal tuberculosis. Modified with permission from Mandavdhare, H.S., Singh, H., Sharma, V., (2017).
Recent advances in the diagnosis and management of abdominal tuberculosis. EMJ Gastroenterology 6, 52–60.
Epidemiology
MAC is ubiquitously present in environment and predominantly isolated from soil and water and is the most common cause of
infection by NTM. Human disease is acquired from these environmental sources, however, human to human or animal to human
transmission is rarely seen. The portal of entry of MAC is the respiratory and the gastrointestinal tract.
Abdominal Tuberculosis and Other Mycobacterial Infections 13
Pathobiology
As MAC infection is rare it is obvious that the body has a robust mechanism to counter this organism and when it is breached the
infection manifests. From HIV infection the role of CD4 cells as key effectors against NTM has been recognized as disseminated
disease develops as the CD4 count falls below 50 cells. TNFa is also a crucial factor in mycobacterial control. Genetic risk factors
include defect in IFNg/IL-12 synthesis and response pathways as their interaction leads to intracellular killing of the mycobacteria.
Treatment
Therapy involves combination of macrolides (clarithromycin/azithromycin), ethambutol, and a rifamycin (rifampin/rifabutin)
given over a period of 12–18 months in non-HIV and till normalization of CD4 in HIV.
Prognosis
Untreated the disease shortens survival and death is usually due to other opportunistic infection as a results of increased HIV
replication and malnutrition. With treatment the majority have recovery although some may develop relapse at a later stage.
Other mycobacteria have also been reported to occasionally result in gastrointestinal involvement (Table 7).
Guidelines
Infectious Diseases Society of America and American Thoracic Society guidelines for diagnosis, treatment and prevention of
nontuberculous mycobacterial diseases published in 2007.
Summary
Mycobacterial infections of the gastrointestinal tract include abdominal tuberculosis or the involvement by the nontuberculous
mycobacteria usually in the immunocompromised individuals. Abdominal tuberculosis remains an important concern in tropical
countries and could involve the peritoneum, gastrointestinal lumen, visceral organs, or the lymph nodes. The diagnosis is
established on basis of microbiological or histological evidence but often empirical therapy is needed. Since abdominal tuberculosis
can easily mimic other diseases like Crohn’s disease, malignancy, etc., it is important to confirm objective response in patients who
have been clinically diagnosed.
References
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Kedia S, Sharma R, Sreenivas V, et al. (2017) Accuracy of computed tomographic features in differentiating intestinal tuberculosis from Crohn’s disease: A systematic review with
meta-analysis. Intestinal Research 15: 149–159.
Khan MR, Khan IR, and Pal KM (2001) Diagnostic issues in abdominal tuberculosis. The Journal of the Pakistan Medical Association 51: 138–142.
Krishna S, Kalra N, Singh P, et al. (2016) Small-bowel tuberculosis: A comparative study of MR enterography and small-bowel follow-through. AJR. American Journal of Roentgenology
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Kumar S, Bopanna S, Kedia S, et al. (2017) Evaluation of Xpert MTB/RIF assay performance in the diagnosis of abdominal tuberculosis. Intestinal Research 15: 187–194.
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Mukewar S, Mukewar S, Ravi R, et al. (2012) Colon tuberculosis: Endoscopic features and prospective endoscopic follow-up after anti-tuberculosis treatment. Clinical and Translational
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differentiating intestinal tuberculosis from Crohn’s disease in Asians. Journal of Gastroenterology and Hepatology 29: 1664–1670.
Paustian FF and Bockus HL (1959) So-called primary ulcerohypertrophic ileocecal tuberculosis. The American Journal of Medicine 27: 509–518.
PratapMouli V, Munot K, Ananthakrishnan A, et al. (2017) Endoscopic and clinical responses to anti-tubercular therapy can differentiate intestinal tuberculosis from Crohn’s disease.
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Sanai FM and Bzeizi KI (2005) Systematic review: Tuberculous peritonitis—Presenting features, diagnostic strategies and treatment. Alimentary Pharmacology & Therapeutics
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Sharma MP and Bhatia V (2004a) Abdominal tuberculosis. The Indian Journal of Medical Research 120: 305–315.
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Sharma V, Singh H, and Mandavdhare HS (2017d) Tubercular abdominal cocoon: Systematic review of an uncommon form of tuberculosis. Surgical Infections 18: 736–741.
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Further Reading
Dawra S, Mandavdhare HS, Singh H, Sharma V, et al. (2017) Abdominal tuberculosis: Diagnosis and management in 2018. Journal, Indian Academy of Clinical Medicine
18: 271–274.
Debi U, Ravisankar V, Prasad KK, Sinha SK, and Sharma AK (2014) Abdominal tuberculosis of the gastrointestinal tract: Revisited. World Journal of Gastroenterology 20(40): 14831.
Abdominal Tuberculosis and Other Mycobacterial Infections 15
Hickey AJ, Gounder L, Moosa MY, and Drain PK (2015) A systematic review of hepatic tuberculosis with considerations in human immunodeficiency virus co-infection. BMC Infectious
Diseases 15: 209.
Krishnamurthy G, Singh H, Rajendran J, et al. (2016) Gallbladder tuberculosis camouflaging as gallbladder cancer—Case series and review focussing on treatment. Therapeutic
Advances in Infectious Disease 3: 152–157.
Mandavdhare HS, Singh H, and Sharma V (2017) Recent advances in the diagnosis and management of abdominal tuberculosis. EMJ Gastroenterology 6: 52–60.
Sanai FM and Bzeizi KI (2005) Systematic review: Tuberculous peritonitis—Presenting features, diagnostic strategies and treatment. Alimentary Pharmacology & Therapeutics
22: 685–700.
Sharma V, Rana SS, Kumar A, and Bhasin DK (2016) Pancreatic tuberculosis. Journal of Gastroenterology and Hepatology 31: 310–318.
Sharma V, Singh H, and Mandavdhare HS (2017) Tubercular abdominal cocoon: Systematic review of an uncommon form of tuberculosis. Surgical Infections 18: 736–741.