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Correspondence
knaga@cc.tuat.ac.jp (K.N.),
uesugi@scl.kyoto-u.ac.jp (M.U.)
In Brief
Asano et al. identified 25-hydroxyvitamin
D (25OHD) as a new endogenous inhibitor
of SREBP. 25OHD impairs SREBP
activation by inducing proteolytic
processing and ubiquitin-mediated
degradation of SCAP, implying a new
opportunity for pharmacological control
of SREBP/SCAP.
Highlights
d 25-Hydroxyvitamin D (25OHD) is an endogenous inhibitor
of SREBP
Article
153-8904, Japan
5The Translational Systems Biology and Medicine Initiative, Center for Disease Biology and Integrative Medicine, Faculty of Medicine,
SUMMARY of SREBPs. When cellular sterol levels are low, the SREBP-
SCAP complex is transported from the ER to the Golgi appa-
Sterol regulatory element-binding proteins (SREBPs) ratus, where SREBPs are cleaved sequentially by site-1 protease
are transcription factors that control lipid homeo- (S1P) and site-2 protease, liberating the NH2-terminal transcrip-
stasis. SREBP activation is regulated by a negative tion factor domain of SREBPs. The mature forms translocate to
feedback loop in which sterols bind to SREBP cleav- the nucleus, where they activate lipogenic genes. The activation
age-activating protein (SCAP), an escort protein of SREBP is tightly regulated by a negative feedback loop in
which 25-hydroxycholesterol (25-HC) and cholesterol bind to
essential for SREBP activation, or to insulin-induced
insulin-induced genes (Insigs; ER anchor proteins) and SCAP,
genes (Insigs) (endoplasmic reticulum [ER] anchor
respectively, inducing the SCAP-Insig interaction and resulting
proteins), sequestering the SREBP-SCAP-Insig com- in retention of the SREBP-SCAP complex in the ER (Radhak-
plex in the ER. We screened a chemical library of rishnan et al., 2007). In the present study, we screened a
endogenous molecules and identified 25-hydroxyvi- chemical library to identify secosteroid molecules that inhibit
tamin D (25OHD) as an inhibitor of SREBP activation. SREBP activation. The results showed that 25-hydroxyvitamin
Unlike sterols and other SREBP inhibitors, 25OHD D (25OHD) inhibits SREBP activation independently of the
impairs SREBP activation by inducing proteolytic vitamin D receptor (VDR).
processing and ubiquitin-mediated degradation of
SCAP, thereby decreasing SREBP levels indepen- RESULTS
dently of the vitamin D receptor. Vitamin D supple-
Screening for Endogenous Inhibitors of SREBP
mentation has been proposed to reduce the risk of
We screened a chemical library of 269 endogenous lipid-related
metabolic diseases, but the mechanisms are un-
molecules, using an SREBP-responsive luciferase reporter
known. The present results suggest a previously un- construct and a constitutively active b-gal reporter gene, co-
recognized molecular mechanism of vitamin D-medi- transfected into Chinese hamster ovary (CHO)-K1 cells (Kami-
ated lipid control that might be useful in the treatment suki et al., 2009). Eleven of the screened molecules decreased
of metabolic diseases. the lipid-free serum-induced expression of the reporter gene
by more than 40% at 1 or 10 mM. These molecules were further
evaluated using a secreted alkaline phosphatase, fused with an
INTRODUCTION SREBP-2 fragment lacking the NH2-terminal DNA-binding
domain (PLAP-BP2513–1,141), to monitor the ER-Golgi transloca-
Sterol regulatory element-binding proteins (SREBPs) are tran- tion and proteolytic activation process of SREBP through
scription factors that control lipid metabolism by stimulating changes in the chemiluminescence of a phosphatase substrate
expression of lipogenic genes (Brown and Goldstein, 1997; (Sakai et al., 1998). When cells were co-transfected with plas-
Goldstein et al., 2006). Newly synthesized SREBPs are localized mids encoding PLAP-BP2513–1,141 and SCAP, elimination of
on the endoplasmic reticulum (ER) membrane, where they bind lipids from the serum-induced secretion of PLAP phosphatase
to SREBP cleavage-activating protein (SCAP), an escort protein and generated chemiluminescence signals. Decreased PLAP
Cell Chemical Biology 24, 207–217, February 16, 2017 ª 2017 Elsevier Ltd. 207
Please cite this article as: Asano et al., Vitamin D Metabolite, 25-Hydroxyvitamin D, Regulates Lipid Metabolism by Inducing Degradation of SREBP/
SCAP, Cell Chemical Biology (2017), http://dx.doi.org/10.1016/j.chembiol.2016.12.017
secretion at levels comparable with that induced by a mixture of decrease in SCAP levels (Figure 2D). In contrast, addition of
25-HC and cholesterol was observed for three hydroxylated MG-132, a general proteasome inhibitor, counteracted the
vitamin D metabolites: 25OHD, 1a,25-dihydroxyvitamin D 25OHD-induced decrease in the protein levels of Flag-tagged
(1,25(OH)2D), and 24R,25-dihydroxyvitamin D (24,25(OH)2D) SCAP(1–767) (Figure 2E). Treatment of cells with 25OHD in
(Figures 1A and 1B). Results of the luciferase reporter assays the presence of MG-132 resulted in polyubiquitination of Myc-
showed that 25OHD was the most potent, with a half maximal tagged SCAP(1–767), in contrast to treatment with 25-HC
inhibitory concentration (IC50) value of 1 mM (Figure 1C). (Figure 2F). These results suggest that 25OHD stimulates the
ubiquitin-proteasome degradation of SCAP.
25OHD Downregulates SREBP Target Genes via a The ER membrane protein, 3-hydroxy-3-methylglutaryl-CoA
Unique Mechanism reductase, is susceptible to ubiquitin-proteasome degradation,
Quantitative real-time PCR (qPCR) experiments showed that mediated by its sterols-dependent interaction with Insig-1 or -2
25OHD decreased the mRNA levels of SREBP target genes (Jo et al., 2011; Sever et al., 2003; Song et al., 2005). We per-
(Brown and Goldstein, 1997) in CHO-K1 cells (Figure 1D). Meta- formed small interfering RNA (siRNA) knockdown experiments
bolic analysis confirmed that 25OHD decreased cellular levels of to examine whether Insigs are involved in the 25OHD-induced
palmitic acid, oleic acid, and stearic acid, consistent with SREBP degradation of SCAP. Knockdown of Insig-1 or -2, and of the
suppression (Figure 1E). The 25OHD-mediated inhibition of Insig-binding E3 ubiquitin ligases, gp78 and TRC8, failed to
SREBP activation was further confirmed by western blot analysis restore protein levels of Flag-tagged SCAP(1–767) (Figures
(Figure 1F). It was previously shown that 25-HC and cholesterol S2A and S2B). Furthermore, 25OHD retained its degradation-
caused the accumulation of the precursor form of SREBP-2, with inducing activity in SCAP point and deletion mutants (Yabe
a concomitant decrease in the mature form of SREBP-2 (Adams et al., 2002; Yang et al., 2000, 2002) that lacked Insig-binding
et al., 2004). In contrast, treatment with the hydroxylated vitamin ability (Figures S2C and S2D). Although an E3 ligase for SCAP
D metabolites diminished protein levels of both the mature and degradation remains unknown, these results indicate that Insigs
precursor forms, suggesting that they inhibit SREBPs through are not required for 25OHD-induced degradation of SCAP.
a different mechanism. 25OHD was most effective in decreasing
SREBP levels, consistent with the results of the luciferase re- 25OHD Induces Proteolytic Cleavage of SCAP Prior to Its
porter assays. 25OHD is the most abundant endogenous vitamin Proteasomal Degradation
D metabolite, and is produced in the liver, a primary site of lipo- We next examined the effects of the proteasome inhibitor, MG-
genesis (Ponchon and DeLuca, 1969). Therefore, we selected 132, on the 25OHD-induced degradation of endogenous, full-
25OHD for further analysis. length SCAP. Treatment with MG-132 restored SCAP levels in
cells exposed to 25OHD. However, instead of the full-length
25OHD Induces Degradation of SCAP SCAP, we observed accumulation of a 100-kDa SCAP frag-
The stability of SREBPs depends on the escort protein, SCAP, ment in the presence of 25OHD (Figure 3A), whereas no such
which is necessary for activation of all three SREBP isoforms fragments were detected in the presence of 25-HC (Figure S3A).
(Brown et al., 2002; Radhakrishnan et al., 2004). SREBP levels Pulse-chase experiments using HaloTag technology, which per-
are essentially undetectable in SCAP-deficient CHO-K1 cells mits specific, pulse labeling of SCAP protein with a fluorescent
and in hepatic SCAP-deficient mice (Matsuda et al., 2001; molecule in cultured cells, confirmed that the SCAP fragment
Moon et al., 2012; Rawson et al., 1999). Results of western is a cleavage product of full-length SCAP (Figure 3B).
blot analysis indicated that treatment with 25OHD reduced the Addition of a protease inhibitor cocktail and MG-132 impaired
levels of both endogenous SCAP and SREBP-2 in a time-depen- the 25OHD-induced degradation and cleavage of endogenous
dent manner (Figure 2A), while qPCR analysis showed that levels SCAP (Figure 3C). Remarkably, treatment of cells with the prote-
of SCAP mRNA were unchanged (Figure 1D). Treatment of CHO- ase inhibitor cocktail alone restored the full-length SCAP, sug-
K1 cells with 25OHD for 12 hr negated cytomegalovirus (CMV) gesting that 25OHD induces proteolytic processing of SCAP
promoter-driven overexpression of Flag-tagged SCAP(1–767), prior to its proteasomal degradation (Figures 3C and S3A).
a truncated version of SCAP often used in studies with CHO- When the cells were treated with each protease inhibitor con-
K1 cells (Brown et al., 2002; Radhakrishnan et al., 2004), tained in the cocktail, 4-(2-aminoethyl)benzenesulfonyl fluoride
whereas treatment with 25-HC had no detectable effect (Fig- hydrochloride (AEBSF), a serine protease inhibitor, most potently
ure 2B). Remarkably, non-hydroxylated vitamin D had no effects impaired the proteolytic cleavage of endogenous SCAP (Fig-
on SCAP levels, indicating that the hydroxylation is required. The ure 3D), suggesting that a serine protease is responsible for
decrease in SCAP protein levels was accelerated after protein the 25OHD-induced proteolysis of SCAP.
synthesis was blocked by cycloheximide, suggesting that To gain insight into the cleavage site(s), we transfected CHO-
25OHD promotes protein degradation of SCAP (Figure 2C). K1 cells with an expression vector encoding full-length SCAP
The protein levels of other ER membrane-bound proteins (cal- Flag-tagged at the NH2 terminus, and treated them with MG-
nexin and activating transcription factor 6) were unchanged (Fig- 132. Western blot analysis with a Flag antibody showed a
ure S1). These results collectively indicate that 25OHD promotes band at 100 kDa. No such bands were detected when we
selective degradation of the SREBP-SCAP complex. used the cells transfected with a vector encoding full-length
Pharmacological inhibition of S1P has been reported to result SCAP Flag-tagged at the C terminus (Figure 3E). These results
in lysosomal degradation of SCAP (Shao and Espenshade, collectively suggest that 25OHD induces proteolytic cleavage
2014). Treatment with ammonium chloride, a general lysosome of the 40-kDa C terminus of SCAP, which is required for its sub-
inhibitor, had no detectable effects on the 25OHD-induced sequent proteosomal degradation.
(Nielson et al., 2016a, 2016b). Nonetheless, the dose-response capable of inhibiting the SREBP activation in hepatocytes.
curves in the presence of 5% fetal bovine serum (Figure 1C) Nevertheless, 25OHD had limited effects on the SCAP protein
suggest moderate but detectable impacts of 25OHD on levels. Perhaps the response of total SCAP levels to 25OHD
SREBP-mediated gene expression at a physiological concentra- might depend on cell types and cell lines, which may have varied
tion (100 nM). expression patterns of SCAP and availability of SCAP-process-
One possibility is that 25OHD might work together with ing proteases. A limitation of this study is that the potential mech-
cholesterol and 25-HC. In fact, 25OHD remained capable of anism of 25OHD was not investigated in various types of cells
inducing the degradation of SCAP and SREBP even when involved in the regulation of lipid metabolism. Such further
SREBP activation is impaired by 25-HC or cholesterol (Fig- studies are currently underway.
ure S3C). Another possibility is that 25OHD might be accumu- 25OHD status has been proposed to be associated with liver
lated in the liver, a major site of SREBP expression and lipid syn- physiology. Severe non-alcoholic fatty liver disease (NAFLD) is
thesis. In the liver, vitamin D from the diet or generated in the skin often associated with vitamin D deficiency (Targher et al.,
by exposure to sunlight is hydroxylated at the C-25 position, 2007). Furthermore, a recent genome-wide association study
forming 25OHD (Bouillon et al., 1995; Brommage and DeLuca, of NAFLD patients identified four major SNPs, including one in
1985). Localized hepatic 25OHD might be responsible for phe- the gene that encodes vitamin D-binding protein, the main carrier
notypes similar to those associated with liver-specific deletion protein for 25OHD (Adams et al., 2013). Two members of the
of SCAP, which has been reported to prevent diabetic fatty cytochrome P450 family, CYP2R1 and CYP27A1, are consid-
livers and steatosis in mice (Moon et al., 2012). When examined ered to be the major 25-hydroxylating enzymes of vitamin D
in Hepa1-6, a mouse hepatocyte cell line (Figure S6), 25OHD in the liver. Double knockout of these enzymes in mice resulted
did decrease the levels of SREBP, suggesting that 25OHD is in enlarged livers (Barchetta et al., 2012), suggesting their
5,000 3 g and 4 C for 5 min. The supernatant was collected and dried under Photo-Affinity Labeling Assays
nitrogen purge and re-suspended in 200 mL of 50% (v/v) isopropanol for meta- The photo-affinity labeling assays were carried out as described previously
bolic analysis at HMT. Metabolic analysis was conducted by the Dual Scan (Kamisuki et al., 2009; Tang et al., 2011). On day 0, CHO-K1 cells were added
Package of HMT using liquid chromatography time-of-flight mass spectrom- to medium A in 10-cm dishes at 1.0 3 106 cells per dish. On day 1, the cells
etry (LC-TOF-MS) based on the methods described previously (Ooga et al., were co-transfected with plasmids encoding Flag-tagged SCAP and Flag-
2011). In brief, LC-TOF-MS analysis was carried out by an Agilent 1200 series tagged Insig-1 in medium A. On day 2, the cells were washed with PBS and
RRLC system SL with an Agilent 6210 LC/MSD TOF mass spectrometer (Agi- incubated in medium C. After 12 hr of incubation, the cells were harvested
lent Technologies). The system was controlled by a MassHunter Workstation and lysed to remove cytosolic proteins using Cell Wash Solution and Perme-
(Agilent Technologies). The spectrometer was scanned from m/z 50 to abilization (Pierce Biotechnology), according to the manufacturer’s protocol.
1,000, and peaks were extracted using MasterHands automatic integration The pellet with the membrane proteins was re-suspended in PBS containing
software (Keio University, Tsuruoka, Yamagata, Japan) in order to obtain 0.1% FOS-choline-13 (Affymetrix) and protease inhibitor cocktail. The mem-
peak information including m/z, peak area, and migration time (MT) (Sugimoto brane fractions were incubated with each molecule, as shown in Figure 5, at
et al., 2010). Signal peaks corresponding to isotopomers, adduct ions, and 4 C for 2 hr, then exposed to UV at 365 nm at a distance of 5 cm, using a
other product ions of known metabolites were excluded, and the remaining VL-215.L (Vilber Lourmat), for 1 hr on ice. For the competition assay, 25OHD
peaks were annotated according to the HMT metabolite database based on or cholesterol was added to the membrane fractions and incubated at 4 C
their m/z values with the MTs. Areas of the annotated peaks were then normal- for 2 hr prior to addition of the probe molecules. After UV irradiation, the
ized based on internal standard levels and sample amounts in order to obtain mixture was homogenized with buffer D and incubated with NeutrAvidin
relative levels of each metabolite. Hierarchical cluster analysis and principal agarose resin (Thermo Scientific) at 4 C for 8 hr. The resin was washed three
component analysis were performed by HMT’s proprietary software, PeakStat times with buffer D and extracted with 13 SDS sample buffer containing 8 M
and SampleStat, respectively. Detected metabolites were plotted on meta- urea at room temperature for 30 min.
bolic pathway maps using VANTED (Junker et al., 2006).
Protease Inhibitor Treatment
Transfection and Western Blot Analysis On day 0, CHO-K1 cells were added to medium A in a six-well plate at 4.0 3
Transfection of cells was performed using FuGENE HD Transfection Reagent 105 cells per well. On day 1, the culture medium was changed to medium C.
(Promega), according to the manufacturer’s protocol. Conditions of drug incu- After 9 hr, cells were treated with 25OHD or 25-HC and 10 mM MG-132, and
bations are described in the figure captions. At the end of incubation, the cells each protease inhibitor was added as follows: 1% (v/v) protease inhibitor
were washed three times with cold PBS, and lysed with buffer A (50 mM Tris- cocktail, 1.5 mM pepstatin A, 50 mM leupeptin, 1 mM AEBSF, 1 mM bedtatin,
HCl [pH 7.5], 150 mM NaCl, 1% [v/v] Nonidet P-40, 0.5% [w/v] sodium deox- 1 mM PF429242, 60 mM E-64d, 1 mM bestatin, or 0.5 mM aprotinin. After 4 hr
ycholate, 8 M urea, and protease inhibitor cocktail; Nacalai Tesque). The cell of incubation, the cells were washed three times with cold PBS, and lysed
lysates were passed 16 times through a 25G needle and centrifuged at with buffer A. Immunoblots were performed with anti-SCAP antibodies.
7,000 3 g at 4 C for 10 min. The supernatants were transferred to new tubes,
and the pellets were extracted with a buffer A. The resulting buffer was centri- SUPPLEMENTAL INFORMATION
fuged at 7,000 3 g at 4 C for 10 min, and the supernatants were combined to
respective original supernatants. The resulting lysate was mixed with 0.20 Supplemental Information includes Supplemental Experimental Procedures,
volume of 63 SDS sample buffer (Nacalai Tesque) and incubated at room six figures, and four schemes and can be found with this article online at
temperature for 30 min. The samples were separated on a 6%, 8%, or 10% http://dx.doi.org/10.1016/j.chembiol.2016.12.017.
SDS-PAGE gel and blotted using specific antibodies. The specific bands
were visualized using enhanced chemiluminescence (ECL Prime Western AUTHOR CONTRIBUTIONS
Blotting Detection Reagent, GE Healthcare) on an ImageQuant LAS 500 (GE
Healthcare). L.A., M.W., and M.U. designed the study; S.S. and J.S. were involved in study
design. K.U. and T.Y. synthesized the compounds. L.A., M.W., Y.R., B.K., and
RNAi M.T. performed the experiments. L.A., M.W., and M.U. wrote the manuscript.
Duplexes of siRNA were synthesized at Hokkaido System Science. siRNA K.N. and M.U. supervised all aspects of this work. All authors interpreted and
sequences targeting human gp78, Trc8, Insig-1, Insig-2, VDR, and GFP (an discussed the data.
invariant control) were reported previously (Adams et al., 2004; Costa et al.,
2009; Lee et al., 2006). On day 0, HEK293 cells were added to six-well plates ACKNOWLEDGMENTS
at 4.0 3 105 cells per well in medium B without antibiotics. On day 1, the cells
were transfected with 60 pmol of siRNAs using Lipofectamine RNAiMAX We thank J. Iwata for technical assistance and K. Mori (Kyoto University) for
Reagent (Invitrogen), according to the manufacturer’s protocol. On day 2, providing an antibody. This work was supported in part by JSPS (26220206
the cells were treated as described in the figure captions, and harvested for to M.U.; 24710260 and 26350972 to M.W.), AMED-CREST (to M.U. and
analysis. K.N.), P-DIRECT, AMED (to M.U. and K.N.), and the Collaborative Research
Program of Institute for Chemical Research, Kyoto University (grant no. 83).
Ubiquitination of SCAP L.A. is a JSPS predoctoral fellow (14J12469). iCeMS is supported by the World
Ubiquitination of SCAP was carried out as described previously (Gong et al., Premier International Research Center Initiative (WPI), MEXT, Japan. This work
2006). On day 0, CHO-K1 cells were added to medium A in 10-cm dishes at was inspired by the international and interdisciplinary environments of the
1.0 3 106 cells per dish. On day 1, the cells were co-transfected with plasmids iCeMS and JSPS Asian CORE Program, ‘‘Asian Chemical Biology Initiative.’’
encoding Myc-tagged SCAP, Flag-tagged Insig-1, and ubiquitin in medium A. M.U. has interests in FGH Biotech, Inc., a Houston-based company that exclu-
On day 2, the cells were washed with PBS and incubated in medium E. After sively licensed the technology described in this article.
treatment of the cells with each molecule, as indicated in Figure 2F, the cells
were lysed with buffer B. The cell lysates were passed 16 times through a Received: April 18, 2016
25G needle and centrifuged. The supernatants were transferred to new tubes, Revised: November 23, 2016
and the pellets were extracted with a buffer B. The resulting buffer was centri- Accepted: December 29, 2016
fuged, and the respective supernatants were combined. The resulting lysate Published: January 26, 2017
was diluted with buffer to decrease the urea concentration below 2 M, and
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