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VIM-2018-0023-ver9-Gauna_1P
Type: research-article
VIRAL IMMUNOLOGY
Volume 31, Number 8, 2018
ª Mary Ann Liebert, Inc.
Pp. 1–7
DOI: 10.1089/vim.2018.0023
AU1 c Adriana Gauna,1 Sandra Losada,2 Maria Lorenzo,2 Marilyan Toledo,3 Henry Bermúdez,2
Pierina D’Angelo,4 Doneyla Sánchez,4 and Oscar Noya2,5
Abstract
Acute hepatitis C virus (HCV) infection is usually asymptomatic, therefore, early diagnosis is rare. It may
remain undiagnosed in individuals who progress to chronic infection, often until serious liver damage has
developed. To incorporate the diagnosis of this viral disease in a multiple-diagnostic assay, we first analyzed by
immunoinformatics the HCV subtype 1a polyprotein (specifically Core, E2, NS3, NS5A proteins) to select
antigenic peptides to be tested initially by the Pepscan technique. Next, we performed the immunodiagnosis of
HCV infection, using the Multiple Antigen Blot Assay (MABA). In 22 patients’ sera included in this study, a
20-mer linear peptide belonging to the N-terminus of the worldwide conserved Core protein showed 100%
sensitivity and specificity; other sequences showed different levels of antibody recognition. The use of MABA
in combination with synthetic peptides as a source of multiple, specific, and nonexpensive antigens for other
infectious diseases could represent a rapid, integrated, and inexpensive diagnostic methodology.
1
Programa de Doctorado en Biotecnologı́a, Pontificia Universidad Católica de Valparaı́so/Universidad Técnica Federico Santa Marı́a,
Valparaı́so, Chile.
2
Sección de Biohelmintiasis, Instituto de Medicina Tropical, Facultad de Medicina, Universidad Central de Venezuela, Caracas,
Venezuela.
3
Cátedra de Parasitologı́a, Escuela de Medicina ‘‘Luis Razetti,’’ Universidad Central de Venezuela, Caracas, Venezuela.
4
Laboratorio de Programas Especiales-Hepatitis y SIDA, Dpto de Virologı́a, Gerencia Sectorial de Diagnóstico y Vigilancia
Epidemiológica, Instituto Nacional de Higiene ‘‘Rafael Rangel,’’ Caracas, Venezuela..
5
Centro para Estudios Sobre Malaria, Instituto de Altos Estudios ‘‘Dr. Arnoldo Gabaldón’’ Instituto Nacional de Higiene-Ministerio del
Poder Popular para la Salud, Caracas, Venezuela.
1
VIM-2018-0023-ver9-Gauna_1P.3d 08/06/18 9:16am Page 2
2 GAUNA ET AL.
To select candidate diagnostic peptide epitopes, we ana- Protein selection and prediction of B-cell epitopes
lyzed the sequence of 2 structural (Core and E2) and 2 The HCV polyprotein subtype 1a (GenBank accession
nonstructural (NS3 and NS5) proteins of 22 selected pep- No. AGN33396.1), specifically Core, E2, NS3, and NS5A
tides that include several mutations found in the GenBank proteins, was selected for this immunoinformatic analysis.
Database. We combined two sequential strategies known as For the determination of possible linear B-cell epitopes,
the Pepscan (27) and MABA (Multiple Antigen Blot Assay) ANTHEPROT (8) was used, based on the physicochemical
(21,22) methodologies, which have been successful in the characteristics of amino acids, such as hydrophobicity (14),
identification of an antigenic sequence for hepatitis A virus surface accessibility (3), and antigenicity (23). In the case
(HAV) diagnosis (10). The first strategy consists of the of the NS3 protein, a crystallized structure (PBD: 1CU1) is
synthesis of a library of peptides (possible antigens) in a available (30), which was used to locate the peptides se-
Spot manner attached to a cellulose membrane support to lected by ANTHEPROT to adjust the epitopes. Crystal-
subsequently be confronted with patients’ sera. The most lized structures are also reported for the NS5A protein
antigenic peptides were selected, subsequently synthesized [pdb: 1ZH1 (26) and 3FQM (19)]. Furthermore, peptides
in greater quantity and then explored by MABA. were additionally analyzed by multiple alignment with
other polyprotein sequences (GenBank accession No.
Materials and Methods ABV46185.2, AGN33294.1, AEW90302.1, ACJ37189.1)
Patient samples and ethical clearance using Muscle tool (www.ebi.ac.uk/Tools/msa/muscle) (24)
and some mutations were included, represented as bold and
Twenty-two characterized sera with informed-consent underlined residues in Table 1. b T1
signature were provided by the Laboratorio de Hepatitis y
SIDA of the Departamento de Virologı́a of the Instituto
Peptide synthesis on cellulose paper
Nacional de Higiene ‘‘Rafael Rangel’’ (Ministerio del Poder
Popular para la Salud-Venezuela). The diagnosis of hepatitis Twenty-two peptides were manually synthesized using
C patients was accomplished by serological third-generation the Spot technique as described previously (10,27) on a
tests, and those borderline cases were referred to INNO LIA Whatman 50 cellulose paper. After the peptide sequences
HCV, an enzyme immunoassay for verification of anti- were assembled, the side-chain protecting groups were
bodies against specific proteins of the virus, and finally by removed with two cleavage solutions for 30 min and 3 h,
polymerase chain reaction of the 5’NC. This study followed respectively, without agitation. Solution I consists of 90%
both the international and national standards on human ex- trifluoroacetic acid (TFA), 5% ultrapure water, 3% triiso-
AU2 c perimentation, including the Declaration of Helsinki (WMA propylsilane (TIPS) and 1% phenol and 1% dichloromethane
2000) and national regulations. This project has been eval- (DCM). Solution II consists of 50% TFA, 2% ultrapure
uated and accepted by the Bioethics Committee of The In- water, 3% TIPS, 1% phenol, and 44% DCM. The re-
stituto de Medicina Tropical (IMT) of the Universidad agents were from Iris Biotech and Sigma-Aldrich che-
Central de Venezuela. mical grade.
Immunoassay with cellulose-bound PBST. Once the NC was blocked, 2 mm-width-strips were
peptides (Pepscan) cut perpendicular to the channels, and each strip thus con-
The dry paper with the ‘‘spots’’ of peptides was blocked tained a row of square spots corresponding to the different
with phosphate-buffered saline containing 0.05% Tween-20 antigens. Strips were immersed individually in the troughs
(PBST) and 5% nonfat dry milk. Peptides were tested with a of an incubation tray in the serum (diluted 1:100 in blocking
pool of four hepatitis C patients’ sera (diluted 1:250 each). solution) of a larger sample of hepatitis C patients’ sera
Horseradish peroxidase (HRP)-conjugated anti-human IgG (including the four ones previously used in Pepscan). In this
(Santa Cruz Biotechnology) was used as the secondary an- preliminary study, we had access to sera from 22 hepatitis C
tibody and developed with a solution of Luminol Super- patients. Four negative sera and one no-serum control (No-
Signal West Pico substrate (Thermo Scientific). The output SC) were included. The reaction was detected separately with
chemiluminescent signal was recorded using ChemiDoc two secondary antibodies. The first one consists of goat anti-
Bio-Rad equipment. human IgG peroxidase (1:15,000; Santa Cruz Biotechnol-
ogy), which was developed using the Luminol SuperSignal
(West Pico Chemiluminescent Substrate) and recorded in a
Solid-phase peptide synthesis ChemiDoc Bio-Rad equipment. The second one consists of
Based on the results obtained with the cellulose-bound anti-human IgG alkaline phosphatase (1:15,000; Sigma) us-
peptides, those that showed antibody recognition were syn- ing a combination of nitro blue tetrazolium chloride (NBT)
thesized by a manual solid-phase Fmoc strategy in polypro- and 5-bromo-4-chloro-3¢-indoly phosphate p-toluidine salt
pylene syringes fitted with a polyethylene porous disk (2,4,9). (BCIP) as chromogenic substrate.
The first amino acid was coupled manually as follows: 2-
chlorotrityl resin (0.4 mmol, 1.0 mmol/g) was washed with Results
DCM (3 · 1 min) and swelled in DCM for 15 min (2 · 15 min).
Peptide selection
Fmoc-aa-OH (1 equiv) and N,N-diisopropylethylamine (DI-
PEA) (3 equiv) were sequentially added to the resin, and the To select sequences with antigenic potential, four proteins
mixture was allowed to react for 90 min. Next, a capping step were analyzed by ANTHEPROT software and peptides of
with methanol (MeOH)-DCM-DMF-DIPEA (5:40:40:15; 20-mer with high values of hydrophilicity, solvent accessi-
2 mL) was carried out. The rest of the synthesis was carried out bility, and antigenicity were chosen. Fifteen peptides were
using 2-(1H-Benzotriazole-1-yl)-1,1,3,3-tetramethylaminium selected based on their physicochemical profiles; four of
tetrafluoroborate (TBTU) as a coupling reagent and DIPEA them belong to the Core protein, two to E2, four to NS3, and
as a base. Fmoc removal was performed with 20% 4- five to NS5A. The E2 protein showed a less hydrophilic and
methylpiperidine-DMF (1:4; 1 · 5 min, 1 · 10 min). Washings antigenic sequence. However, 20-mer peptides with the
between deprotection and coupling were carried out with higher possible values were selected. Figure 1 represents an b F1
DMF (3 · 0.5 min) and DCM (3 · 0.5 min), using 2 mL of each example of sequence analysis, together with the ANTHE-
solvent. PROT profile of the Core protein and the selected peptides.
Peptides were synthesized with and without incorporation The X-ray structure of the NS3 protein is currently available
of stearic acid at the N-terminal end of the sequence. The (PDB: 1CU1), which allowed us to determine if sequences
fatty acid coupling was carried out using 15 M excess of this selected by primary structure predictions by ANTHEPROT
acid activated with N,N¢-Diisopropylcarbodiimide (DIC)/ are exposed in the tertiary structure. This analysis showed
hydroxybenzotriazole (HOBt) in DCM. Then, the complete that all selected peptides are well structured and the two
peptides were cleaved from the support by using TFA sequences selected in the protease domains are exposed.
(95%)/TIPS (2.5%)/ultrapure water (2.5%) for 3 h. Char- However, one of the peptides of the helicase domain was
acterization and purity were evaluated by Electrospray Io- discarded, as it was not exposed to solvents.
nization Time-of-Flight (ESI-TOF) mass spectrometry and The reported crystallized structures of the NS5A protein
high-performance liquid chromatography, respectively. were not considered in this study. The possible epitopes
obtained by the ANTHEPROT analysis cannot be located in
Analysis of peptides antigenicity by the MABA the three-dimensional (3D) structures as they are completely
different sequences. The sequence used in this study is of
The simultaneous antigenicity of the synthetic peptides recent date (2014), while the 3D structures were reported in
was analyzed by a special dot blot assay developed in our 2005 and 2009. We propose to use them in the future to
laboratory known as MABA (21,22). A rectangle of nitro- predict possible B epitopes based on structure.
cellulose (NC) paper (Bio-Rad) was cut and soaked in dis- Finally, even when the polyprotein of genotype 1a of
tilled water. The wet paper was located on an acrylic HCV is conserved, there are several available sequences,
template (Miniblotter 20SL) for its sensitization by the which is the reason why a multiple alignment was utilized to
introduction of 60 mL of different peptide preparations include some possible mutations. All 22 selected sequences
(20 mg/mL in pH 9.6 carbonate-bicarbonate buffer) in each are summarized in Table 1, as well as their selection criteria.
parallel groove. In addition, during immobilization on the
membrane, a normal control human serum (HS) was in-
Solid phase peptide synthesis and testing on cellulose
cluded in two of the parallel marginal lanes as an internal
paper (Pepscan)
control of the reaction in each strip. This control should
always react in the presence of the secondary antibody. The To experimentally determine the antigenicity of selected
peptide solutions were removed by washing, and blocking peptides, the 22 sequences in Table 1 were synthesized
was achieved by immersing the NC in 5% nonfat milk in on a functionalized cellulose paper in a spot manner. Three
VIM-2018-0023-ver9-Gauna_1P.3d 08/06/18 9:16am Page 4
4 GAUNA ET AL.
FIG. 1. ANTHEPROT physicochemical profiles based on the primary structure of the core protein Peptide numbers are
the same in spot synthesis.
chemical control spots, numbered 23, 24, and 25, were added lowest ones of those observed in the immunoinformatic
as a repetition of peptides 9, 17, and 4, respectively. When the analysis (data not shown). These results suggest that the Core
membrane with peptides was exposed to a pool of four hepa- molecule, which is a highly conserved basic protein, is the
titis C patients’ sera, antibody recognition was observed for most antigenic under our study conditions.
peptides 1, 3, 2, and 4, in decreasing order of signal intensity, This technique allowed us to reduce the selected peptides
F2 c corresponding to the N-terminal end of the Core (Fig. 2). to those corresponding to spots 1, 2, 3, and 4 for a larger
Other sequences, such as spots 11, 13, 15, 16, 17, 18, and 24 scale synthesis on resin, with and without incorporation of
(a repeat of spot 17) of nonstructural proteins, showed slight stearic acid at the N-terminus, to be tested against a total of
antibody recognition. However, since we are looking for po- 22 hepatitis C patients’ sera by MABA.
tent antigens, these peptides were discarded for the time being.
Multiple antigen blot assay
No recognition was observed by selected sequences from the
structural protein E2, which is not surprising since its values of Eight peptides were tested by MABA, corresponding to
hydrophilicity, solvent accessibility, and antigenicity were the sequences selected by Pepscan (spots 1–4) and their analogs
with stearic acid (Table 2). Peptide IMT-2052 (spot 1 in b T2
Pepscan) showed antibody recognition by all 22 infected were observed for spots 1–4, all of them from Core protein,
patients’ sera included in this preliminary study. Most of highlighting its relevance in the immunodiagnosis of hepa-
signals corresponding to this peptide were strong using both titis C infection.
enzymes, the anti-human IgG peroxidase and anti-human It was precisely spot 1 that exhibited the strongest anti-
IgG alkaline phosphatase. Its stearic acid analog to IMT- body recognition by Pepscan, and it was the peptide that
F3 c 2052 resulted with recognition values of 16/22 (Fig. 3A, B). showed the highest sensitivity when synthesized and tested
Other peptides showed different degrees of antibody by MABA. Peptide IMT-2052 had a recognition frequency
recognition ranging from 13/22 to 0/22, as summarized of 22/22, 100% of sensitivity, while sequences of peptides
in Table 2. IMT-2054, IMT-2053, and IMT-2055 showed sensitivities
of 59%, 30%, and 0% by MABA, respectively, which aligns
with the signal intensity observed by Pepscan. The 100%
Discussion
IMT-2052 recognition frequency will lead us to confirm
In previous studies, we have combined immunoinformatic these high values of sensitivity and specificity and to de-
analysis, Pepscan methodology, and MABA technique in the termine the positive and negative predictive values through
discovery of antigenic peptides for immunodiagnosis of hep- epidemiological studies in the general population.
atitis A infection (10). In this study, sequences of two structural It has been reported that peptides containing bulky and
and two nonstructural proteins of HCV were analyzed in hydrophobic side chains may bind better to solid plastic
combination with structural analysis of NS3 protein. Twenty- surfaces of certain enzyme-linked immunosorbent assay
two sequences, most of them of 20-mer, were selected for their (ELISA) plates (25). As mainly hydrophobic interactions are
synthesis on a cellulose membrane. responsible for adsorption to the surface of PVC plates as
During this Pepscan, we used amino acid solutions four well as NC paper, we may assume that the use of fatty acids
times less concentrated than previously used to synthesize will provide the conjugate with the necessary hydropho-
20-mer peptides on paper (10). Even when the lowest con- bicity (11). In an attempt to optimize the MABA technique
centration of amino acid solutions was used, strong signals and improve peptide adhesion to NC paper, we synthesized
FIG. 3. Antigenicity of synthetic peptides evaluated by MABA by sera of 22 hepatitis C patients and 5 negative controls
using (A) anti-human IgG peroxidase with Luminol SuperSignal West Pico Chemiluminescent Substrate and (B) anti-
human IgG alkaline phosphatase conjugates with NBT and BCIP as chromogenic substrates. No-SC and Control HS as
complementary controls were included. BCIP, bromo-4-chloro-3¢-indoly phosphate p-toluidine salt; HS, human sera;
MABA, multiple antigen blot assay; NBT, nitro blue tetrazolium chloride; No-SC, No-serum control.
VIM-2018-0023-ver9-Gauna_1P.3d 08/06/18 9:17am Page 6
6 GAUNA ET AL.
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