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Effects of ​Bacillus subtilis ​on the reduction of U(VI) by nano-Fe​0

Congcong Ding a​​ ,​b​, Wencai Cheng a​​ , Yubing Sun a​​ ,​c​,​*​, Xiangke Wang a​​ ,​c​,​d​,​*

a​
Institute of Plasma Physics, Chinese Academy of Science, P.O. Box 1126, Hefei 230031, PR China b​​ College of Nuclear Science and

Technology, University of Science and Technology of China, Hefei 230000, PR China ​c​Collaborative Innovation Center of Radiation

Medicine of Jiangsu Higher Education Institutions, School for Radiological and ​Interdisciplinary Sciences (RAD-X), Soochow University,
Suzhou 215123, PR China ​d​NAAM Research Group, Faculty of Science, King Abdulaziz University, Jeddah 21589, Saudi Arabia

Received 2 November 2014; accepted in revised form 19 May 2015; available online 1 June 2015

Abstract

The effects of ​Bacillus subtilis ​(​B​. ​subtilis​, a typical model bacterium) on the reduction of U(VI) by nanoscale zero-valent iron (nano-Fe​0​)
were investigated using batch techniques. The reaction products were analysed using spectroscopic tech- niques, and a kinetics model
was developed to elucidate the mechanisms of U(VI) reduction by nano-Fe​0​. The presence of ​B​. ​subtilis ​enhanced the U(VI) sorption rate
at pH 3.5–9.5 but inhibited the reduction rate of U(VI) to U(IV) at pH > 4.5. According to the FTIR and XRD analysis, the reduction of
U(VI) to U(IV) was inhibited due to the formation of inner-sphere surface complexes between the oxygen-containing functional groups
of ​B.​ ​subtilis ​or extracellular polymeric sub- stances with the Fe(II)/Fe(III) generated the EXAFS analysis, a fitting of U–Fe by
̊ ̊ ​
nano-Feshell at ​$​3.44 ​0​, which A​ oxide ​$​2.90 Afilm ​ ) further of nano-Fe​0​. For the nano-Fe​0 + ​B. subtilis i​ ndicated the formation of
inner-sphere blocked electron transport from the Fe​0 ​core to U(VI). Based on revealed inner-sphere system, the U–Fe bidentate shell (at
̊
$​3.44 complexes A​ ) between uranyl and the and the U–C/P shell (at surface complexes. The kinetics model supported that U(VI) reduc-
tion was triggered by U(VI) sorption on the oxide shell of nano-Fe​0​. The XPS and XANES analyses showed that reductive precipitation
was the main mechanism of U(VI) removal by nano-Fe​0​, whereas the sorption process dominated the removal of U(VI) in the presence of
B.​ ​subtilis, ​which was further demonstrated by TEM images. Ó 2015 Elsevier Ltd. All rights reserved.
2009​), which increases the solubility of uranium by several orders
of magnitude (​Dong and Brooks, 2006; Stewart et al., 2010​).
However, tetravalent uranium U(IV) is often immobilised as solid
U(IV) (such as uraninite (UO​2​)), which inhibits uranium transport
1. INTRODUCTION in contaminated soils and groundwater (​Langmuir, 1978​).
Therefore, the reduction of mobile U(VI) to U​(IV)​O​2(s) by
​ reducing
Uranium is a common radionuclide contaminant in soils and agents has been extensively investigated for the remediation and
aquifers that results from nuclear fuel production, weapons prediction of U(VI) in groundwater and soils (​Riba et al.,
manufacturing and research activities (​Stewart et al., 2010; Sun et
al., 2013, 2014b​). The environmental risk of uranium is mainly * ​Corresponding authors at: Institute of Plasma Physics, Chinese
dependent on the degree of its mobil- ity, which is greatly affected
Academy of Science, P.O. Box 1126, Hefei 230031, PR China. Tel.: +86
by its valence state (​Bi et al., 2013​). Hexavalent uranium 551 65592788; fax: +86 551 65591310.

(U​(VI)​O​2+​2​) is soluble and easily E-mail addresses: ​sunyb@ipp.ac.cn ​(Y. Sun), ​xkwang@ipp.ac. cn​,
xkwang@suda.edu.cn ​(X. Wang).
forms U(VI) complexes with carbonates in groundwater (​Gui et al.,
2008; Bernier-Latmani et al., 2010; Veeramani et al., 2011; Troyer corresponding
et al., 2014​). Recent studies have revealed that reduced U species
̊ http://dx.doi.org/10.1016/j.gca.2015.05.036 ​0016-7037/Ó
include the U(IV) uraninite (UO​2​) and non-uraninite
​ the 3.85 A​
2015 Elsevier Ltd. All rights reserved.
species (monomeric U(IV)) species lacking U–U associations in the
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Geochimica et Cosmochimica Acta 165 (2015) 86–107


EXAFS spectrum (​Bernier-Latmani et al., 2010; Fletcher et al., (10​6​–10​9 ​cells per gram of soil or aquifer material (​Leone et al.,
2010; Boyanov et al., 2011; Alessi et al., 2014​). Non-uraninite 2007​), and potentially represent a significant propor- tion of
U(IV) lacks the crystalline structure of ura- ninite, which makes it reactive surface area exposed to fluid. Thus, the influence of
more labile and prone to coordina- tion with carboxyl, phosphoryl bacteria on the fate of U(IV) in water–mineral surface
or carbonate groups (​Veeramani et al., 2011; Stylo et al., 2013; environments should be considered. The bioreduc- tion of U(VI)
Alessi et al., 2014; Lee et al., 2014​). Due to the strong surface has been observed in the presence of metal-reducing bacteria,
reactivity and high surface area to volume ratio, nanoscale including ​Shewanella putrefaciens ​CN32 (​Gu and Chen, 2003​),
zero-valent iron (nano-Fe​0​) has widely been employed as one of the Desulfovibriode sulfuricans (​ ​Lovley and Phillips, 1992​), ​Geobacter
most promising permeable reactive barrier (PRB) materials for sulfurreducens (​ ​Jeon et al., 2004​) and ​Desulfitobacterium ​(F
​ letcher
degrading or removing organic and inorganic contaminants in et al., 2010​). These metal-reducing bacteria can reduce U(VI)
groundwater (​O’Carroll et al., 2013​). In addition, Nano-Fe​0 ​exhibits directly via their metabolism (​Bernier-Latmani et al., 2010​) or via
a great efficiency for U(VI) reduction (​Gu et al., 1998; Liger et al., the reduction of Fe(III) to Fe(II) and subse- quently reduces U(VI)
1999; Riba et al., 2008; Yan et al., 2010; Sun et al., 2014a​). to U(IV) (​Veeramani et al., 2011​).
Evidence has indicated that U(VI) is removed by nano-Fe​0 ​via two On the other hand, the enhanced biosorption of U(VI) by
processes, sorption and the incorporation of U(VI) on the surfaces non-metallic reducing bacteria have been extensively inves- tigated
​ due to a variety of oxygen-containing functional groups of cell
of nano-Fe​0 corrosion products (​Fiedor et al., 1998; Farrell et al.,
surface (​Gadd, 2007​). ​Bacillus subtilis ​(​B. sub- tilis​, Gram-positive
1999​) followed by the reductive precipitation (UO​2​(s)) of U(VI) bacterium) is a non-metallic reducing bacterium, which was
selected as a model Gram-positive bacterium for this study because
due to the elec- tron
​ transfer between Fe​0 ​and U(VI) (​Gu et al.,
it is a common soil microorganism and its cell wall properties have
1998; Morrison et al., 2001; Riba et al., 2008​). Previous studies been well-characterized and described in previous reports
have indicated that the reduction of U(VI) by nano-Fe​0 ​is directly (​Beveridge and Murray, 1980; Fowle et al., 2000; Fein et al., 2005;
driven by the oxidation of Fe(0) to Fe(II) (​Powell et al., 1995; Gu et Leone et al., 2007​). ​Gorman-Lewis et al. (2005) ​found that uranyl
al., 1998​). However, recent evidence sup- ports the indirect species could form stable surface complexes on the cell walls of ​B​.
reduction of U(VI) by Fe(II) in the solid phase (structural Fe(II)) subtilis v​ ia electrostatic interactions and covalent bonding. In
due to the existence of oxide film outside of nano-Fe​0​. ​Charlet et al. addition, ​Fowle et al. (2000) ​determined that the neutral phosphate
(1998) ​determined that the final Eh for U reduction corresponded to and deprotonated carboxyl functional groups of ​B​. ​subtilis ​played
the Fe(II)/Fe(III) couple rather than the Fe(0)/Fe(II) couple. Scott’s important roles in the formation of uranyl complexes. However,
groups provided recent evidence that the pre-existent oxide film or bacteria can adhere to Fe-oxide minerals through the formation of
the corrosion products of nano-Fe​0 ​(such as maghemite and inner-sphere Fe-phosphate/phosphonate complexes (​Parikh and
magnetite) prevented direct interactions between Fe(0) and U(VI) Chorover, 2006; Ojeda et al., 2008​). ​Parikh and Chorover (2006)
(​Dickinson and Scott, 2010; Scott et al., 2010​). In addition, ​Yan et reported that inner-sphere Fe-phosphate complexes were formed
al. (2010) ​revealed that the reduction of U(VI) to U(IV) and the between Fe(II)/Fe(III) on Fe-oxides and the terminal
phosphate/phosphonate and phosphodiester groups of bacteria. In
subsequent precipitation of U(IV) (as UO​2​(s)) is triggered by the
addition, it is determined that ​B. subtilis c​ an secrete bacterial
0​ extracellular polymeric sub- stances (EPS), which are a complex
sorption of U(VI) on the nano-Fe​
​ surface. It is also reported that
0 ​
mixture of macro- molecule such as polysaccharides, proteins, and
the reactivity of nano-Fe​ was enhanced in the presence of iron
nucleic acids. EPS can also adsorb to the iron oxide-film, which
reducing bacteria (​Lee et al., 2001; Rosenthal et al., 2004​).
would decrease the reduction activity of nano-Fe​0 ​(​Cao et al., 2011;
Therefore, more details regarding the reduction mecha- nisms of
Hong et al., 2013​). Therefore, it is essential to investigate the effect
U(VI) by nano-Fe​0 ​are required to predict ura- nium transport in
of non-metallic reducing bacteria on the reduction of U(VI) by
soil and groundwater under reductive conditions.
nano-Fe​0​. However, to the author’s knowledge, investigations
Bacteria are an inherent part of the groundwater system relevant to the simulta- neous biosorption and reduction of U(VI) in
ternary system have not been well documented.
a bidentate configura- tion
​ based on EXAFS analysis (U–Si at
Extended X-ray absorption fine structure (EXAFS)
̊​ ̊​
spectroscopy has widely been used to explore the interac- tion $​3.16 A ). The U–P distances in phosphate precipitates (​$​3.58 A )
mechanisms of U(VI) at water–mineral interfaces. ​Waite et al. indicate that uranyl formed a monodentate complex with phosphate
(1994) ​identified the surface complexes of U(VI) on ferrihydrite (a (​Beazley et al., 2007​). In addition, it was demonstrated that the
bidentate complex formed by polyhedral edge sharing, ̊​
doublet feature on a UO​2(s) standard
​ between 3.0 and 4.2 A resulted
(>Fe–O​2​)UO​2​(H​2​O)​n​)) as having a U–Fe distance of approximately
̊​ ̊
3.5A based on EXAFS analysis. In addition, a similar distance was from edge-sharing U–U coordination at approximately 3.87 A
observed by ​Reich et al. (1998)​. ​Bargar et al. (2000) ​observed that (​Fletcher et al., 2010​). Therefore, EXAFS analysis was employed
in this study to explore the reduction mechanisms of U(VI) by
U(VI) was simultaneously coordinated with FeO​6 ​octahedra and
nano-Fe​0 ​in the presence and absence of ​B​. ​subtilis.​ The kinetics
model
carbonate (or bicarbonate) ligands in a​ bidentate configuration
(hematite-U(VI)–carbonate). ​Sun et al. (2014b) p ​ roposed the

coordination of UO​2​2+ ​with the


​ SiO​4 ​tetrahedra of sepiolite through
C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107 87
could describe evolution of the thermodynamic quantities of a
chemical reaction occurring on water-adsorbent inter- faces with groundwa- ter
​ (​Gui et al., 2009​) and can greatly influence uranium
sorption on mineral surface. These stock solutions were prepared
time. ​Wang et al. (2005) ​quantified the differences in the 243​
​ Am(III)
desorption behaviour based on a pseudo-first-order kinetics model. with pre-boiled, N​2(g)​-purged distilled water and placed in an
In addition, ​Yan et al. (2010) ​used a kinetics model to investigate anaerobic chamber prior to use. Nano-Fe​0 ​was purchased from the
the kinetics of U(VI) removal and reduction on nano-Fe​0​. A Aladdin Industrial Corporation Company (Shanghai, China). The ​B.​
kinetics model that is consistent with our experimental results was subtilis ​strain was pro- vided by the College of Life Science at
developed to elucidate the mechanisms of U(VI) reduction by Sichuan University. ​B​. ​subtilis ​cells were cultured in a beef
extract-peptone med- ium at 30 °C. Next, the cells were harvested
nano-Fe​0 ​in the presence and absence of ​B​. ​subtilis​.
by centrifuga- tion (4000​Â​g​, 5 min) during the stationary phase and
The objectives of this study were (1) to investigate the effects
were washed three times using 0.05 mol/L NaCl solutions.
of ​B.​ ​subtilis ​on the immobilisation of U(VI) by nano-Fe​0 ​under
different environmental conditions, such as reaction time, carbonate
2.2. Experimental methods
concentration, pH, initial U(VI) concentration and temperature; and
(2) to distin- guish the reduction mechanisms of aqueous U(VI) via
2.2.1. Kinetics experiments
sorp- tion to nano-Fe​0 ​using X-photoelectron spectroscopy (XPS),
The kinetics experiments were conducted in an anaero- bic
X-ray diffraction (XRD), Fourier transformed infra- red (FTIR)
spectroscopy, X-ray absorption near-edge spec- troscopy chamber that was purged with N​2(g) at
​ a flow rate of 0.1L/min
(XANES), EXAFS spectroscopy, scanning electron microscopy throughout the reaction period with 1.0, 5.0 and 10.0 mmol/L of
(SEM), transmission electron micro- scopy (TEM), and a kinetics Na​2​CO​3 ​as the background electrolyte. Briefly, 2, 10 and 20 mL of

model. This paper highlights the reduction of U(VI) by nano-Fe​0 ​in
0.1 mol/L Na​2​CO​3 ​stock solu- tion and 168, 160 and 150 mL of
the presence of non-metallic reducing bacteria and EPS in the PRB,
distilled water, respec- tively, were added to polypropylene tubes
and the findings play a vital role in predicting the fate and trans-
containing 30 mL of U(VI) stock solution ((1.0 mmol/L). Then, 0.4
formation of U(VI) in the geochemical environment.
g
of nano-Fe​0 ​was added to each tube at a solid/solution ratio of 2g/L.
2. MATERIALS AND METHODS
For nano-Fe​0 ​+ ​B. subtilis ​systems, 2, 10 and 20 mL of 0.1 mol/L

2.1. Materials Na​2​CO​3 ​and 148, 140 and 130 mL of distilled


​ water, respectively,
were added to 20 mL of the ​B. subtilis ​suspension (​$​3.0 ​Â ​10​9
All chemicals used in this study were analytical grade, and cells/mL). Then, 30 mL of the 1.0mmol/L U(VI) stock solution and
all solutions were prepared using Milli-Q water. The U(VI) stock 0.4g of nano-Fe​0 ​were added to the suspension in a glovebox that

solution (1.0mmol/L) was prepared from UO​2​(NO​3​)​2​Á​6H​2​O in a was purged with N​2 gas.
​ The initial pH of suspensions was adjusted
to 3.5, 5.0, 7.0 or 9.0 by the drop-wise addi- tion (<0.1mL) of a
0.01M HNO​3 ​solution. The Na​
​ 2​CO​3 stock
​ solution (0.1 mol/L) was 1.0mol/L HNO​ /NaOH solution. Aliquots of the suspension were
3​
periodically withdrawn from the tubes by using a 6mL
used as a back- ground electrolyte because CO​3​2​À ​
is common in polypropylene syringe. Subsamples containing 3 mL of the
suspensions (solid plus aqueous phase) were used to extract amounts of HNO​3​/NaOH. Next, the suspensions were purged and
surface-adsorbed U(VI) by using a 0.2 mol/L Na​2​CO​3 ​solution. The sealed under N​2(g) and
​ continuously stirred at 25 °C for 24 h. The
final pH values of the experimental suspensions were measured
remain- ing
​ samples (3 mL) were centrifuged and filtered through a before centrifugation and filtration.
0.1 lm syringe filter. The filtrate was used to determine the U(VI)
concentration in the aqueous phase and the collected particles were 2.2.3. Effects of B. subtilis, EPS and the U(VI)
freeze-dried for analysis of the solid phase. concentrations
The removal of U(VI) in the nano-Fe​0 ​+ ​B. subtilis
2.2.2. Reaction edge experiments treatments with different ​B. subtilis ​concentrations (​$​1.5– 9.0 ​Â ​10​8
Reaction edge experiments were prepared in an anaero- bic cells/mL) was determined at 298 K in an anaero- bic chamber. The
chamber using a 1.0 mmol/L Na​2​CO​3 ​background elec- trolyte for removal and reduction of U(VI) by nano-Fe​0 ​in the presence of

0​ 0 ​ EPS-free ​B. subtilis (​ 3.0 ​Â ​10​8 ​cells/mL) and different EPS
nano-Fe​ , nano-Fe​ + ​B. subtilis a​ nd ​B.​ ​subtilis​, respectively. For
concentration (0–0.5 g/L) were measured at pH 3.5 and pH 7.0,
nano-Fe​0​, 0.2 mL of a 0.1 mol/L Na​2​CO​3 stock solution and 16.8
​ respec- tively, at 25 °C. Obtainment of EPS and EPS-free ​B.
mL of distilled water were added to 3.0mL of the U(VI) stock
subtilis ​was adapted to the protocol of ​Omoike and Chorover
solution. Next, 0.04g of nano-Fe​0 ​was added to the suspension. For (2004)​. The detailed extraction process was provided in ​Supporting
B​. ​subtilis,​ the suspensions included 0.2mL of the 0.1mol/L
Information (SI)​. The removed capacities of U(VI) by nano-Fe​0 ​and
Na​2​CO​3 stock
​ solution, 14.8 mL of distilled water, 3.0 mL of the nano-Fe​0 ​+ ​B. subtilis w
​ ere deter- mined at U(VI) concentrations of
U(VI) stock solution, and 2 mL of the ​B. subtilis s​ uspension (​$​3.0 150–450 lmol/L at 5, 15 and 25 °C. The initial pH was adjusted to
 ​10​9 ​cells/mL). For nano-Fe​0 ​+ ​B. subtilis​, 0.04 g of nano-Fe​0 ​was 5.0 to avoid the formation of schoepite precipitates (as shown in
added to the suspension. The initial pH of the resulting suspension Fig. 3​). All of the experimental data were averages of trip- licate
was adjusted to 3.5–9.5 by the drop-wise addition of negligible data (the resulting error bars (within ±5%) are provided).
88 C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107
2.3. Analytical techniques U(VI) concentrations and the aqueous U(VI) concentration after the
reaction, respectively, and ​m ​(g) and ​V ​(mL) rep- resent the mass of
The U(VI) concentrations were measured using a nano-Fe​0 ​and the volume of the suspen- sion, respectively.
Fluorolog-3 fluorescence spectrometer (Johin-Yvon-SPEX The adsorbed U(VI) ([U(VI)]​adsorbed​) can be extracted by
instruments, New Jersey). However, this method cannot detect the following the methods of ​Gu et al. (1998)​. Briefly, equal volumes
U(IV) species because it does not emit fluores- cence (​Kaminski et
of a 0.2 mol/L Na​2​CO​3 ​solution were added to the suspensions
al., 1981; Brina and Miller, 1992​). Briefly, 0.1 mL of the U(VI)
(solid plus aqueous phase) after reaction. Next, the suspensions
solution was added to 3 mL of deoxygenated phosphoric acid
were reacted for 30 min with vigor- ously stirring. The U(VI)
(10%) to enhance its phosphorescence. Then, the mixed solutions
concentrations in the ([U(VI)]​ex​) extract were regarded as the sum
were sent from the anaerobic chamber to the Fluorolog-3
fluorescence spectrometer in serum bottles sealed with butyl rubber of [U(VI)]​aq and
​ [U(VI)]​adsorbed ​(i.e., [U(VI)]​ex ​= [U(VI)]​aq ​+
stop- pers. The detection limit of this method is 0.1mg/L. A 450-W
Xenon arc lamp was used as the excitation source, and the emission [U(VI)]​adsorbed​) due
​ to the absence of fluorescence by the U(IV)
spectra were recorded from 482 to 555nm with an excitation
species. Therefore, the reduced U(VI) concentration ([U(VI)]​reduced​)
wavelength of 280nm. The U(VI) concentration in solution was
calculated at the peak emission of 515.4 nm.
is the difference between the [U(VI)]​0 ​and [U(VI)]​
​ ex ​concentrations

The percentages and capacities of U(VI) removal ([U]​removal (​Yan et al., 2010​), and the reduc- tion percentage of U(VI)

(%) and [U]​removal ​(mg/g), respectively) were determined


​ according ​ shown in Eq. ​(3)​.
([U]​reduction ​(%)) was expressed as
to Eqs. ​(1) and (2)​, respectively.
1⁄2​U​reduction​ð​%​Þ 1⁄4 ð1⁄2​Uð
​ ​VI​Þ​0 ​À 1⁄2​Uð
​ ​VI​Þ​ex​Þ​/​1⁄2​U​ð​VI​Þ0​ ​Â
1⁄2​U​removal​ð​%​Þ 1⁄4 ð1⁄2​U​ð​VI​Þ​0 ​À 1⁄2​Uð
​ ​VI​Þ​aq​Þ​/​1⁄2​U​ð​VI​Þ​0 ​Â
100​%​ð​3​Þ
100​%
ð​1 For this method, the recovery percentage of U(IV) to U(VI)
Þ 1⁄2​U​removal​ð​mg​/​g​Þ 1⁄4 ​V ​Â ð1⁄2​U​ð​VI​Þ​0 ​À 1⁄2​Uð
​ ​VI​Þ​aq​Þ​/​m can be obtained >95% (​Table S1, SI​).
ð​2​Þ
2.4. Characterisation
where [U(VI)]​0 ​(mg/L) and [U(VI)]​aq (mg/L)
​ are the initial
pH 7.0. The experimen- tal details were identical to those described
The morphological analyses of nano-Fe​0​, nano-Fe​0 ​+ ​B. for the reaction edge experiments, except for the background
subtilis ​and ​B. subtilis ​were performed using SEM (FEI-JSM electrolyte. To explore the effects of ​B. subtilis o​ n U(VI) reduction
6320F) and TEM (JEM-2010, Japan). Samples were prepared in an
by nano-Fe​0​, Na​2​CO​3 ​background solutions were replaced by ​
anaerobic chamber as described by ​Zhang et al. (2007)​. Generally,
samples were fixed in a 2.5% glutaraldehyde solution for 4 h and NaClO​4 solutions
​ to prevent interference by C atoms. Thus, the
dehydrated them sequen- tially in 10, 30, 70, 90 and 100% ethanol. EXAFS analysis here just considered the interac- tion between free
The fixed dehydrated UO​2​2+​, nano-Fe​0 and

​B. subtilis​. On this ​basis, the influence of
samples were mounted onto a SEM stub for SEM analysis, and
placed on copper grids for TEM and selected area elec- tron CO​3​2​À ​on the EXAFS spectra of the ternary​ system will be
diffraction (SAED) analyses. The zeta potentials of the nano-Fe​0 investigated in further study. After equilibration, each experimental
and ​B.​ ​subtilis ​were determined using an acoustic spectrometer system was centrifuged at 10,000​Âg​ f​ or 10 min. The wet and
(​Dukhin et al., 2001​).The corrosion products of the nano-Fe​0 ​were homogeneous samples were placed in an anaerobic chamber under
identified by XRD (RigakuMiniFlex 600, Japan) by using a Cu-Ka N​2(g) ​condi- tions for the XANES and EXAFS measurements.
̊​ U L​III​-edge XANES and EXAFS spectra were collected at
radiation source (k = 1.5406 A ) of 10 to 70° with a step size of
the BL14W1 beamline at the Shanghai Synchrotron Radiation
0.02° and a count time of 8 s. The FTIR spectra were collected
Facility (SSRF, Shanghai, China) to investigate the local structure
from a KBr pellet by using a JASCO FTIR 410 spectrophotometer.
of uranium on the solid phases. The sam- ples were measured in
Briefly, 2 mg of sample and 200 mg of KBr (sealed in a desic-
fluorescence mode using a high-throughput 30-element solid-state
cator) were ground before pressing into a disc. The spectrum of
germanium array detector due to the low uranium concentration,
each sample was collected from 400 to 4000 cm​À​1​.Surface analysis
whereas the U​(IV)​O​2​(s) reference sample was measured in transmis-
of the solid phase was performed using a Thermo Escalab 250 XPS
sion mode. A Silicon (111) double-crystal monochromator was
with Al Karadiation at 150 W. The samples were attached to a
used to tune the desired energies of the incident X-ray beam, and a
sample supporting plate by using tape before placing in a chamber
Zr-foil was used for energy calibration. The spectral data were
and evacuating to ​$​10 Torr. The energies were corrected using the
analysed using Athena and Artemis, which are included in the
C 1s peak at 284.6 eV as a reference. The XPS data were processed
IFFEFIT 7.0 software package (​Newville, 2001​). The accuracies of
using the XPSPEAK software (version 4.1).
the bond distances and coordination numbers (CNs) were estimated
̊ ​
2.5. XANES and EXAFS analyses to be ±0.03 A and ±30%, respectively, when compared to the
crystal structures. In addition, the multiple scattering (MS) paths
A uranyl nitrate solution (1 mmol/L UO​2​(NO​3​)​2​) and solid 0​ ,
from the axial oxygen atoms were determined (i.e., O​ax =U=O​
​ ax​
U​(IV)​O​2​(s) were used as U(VI) and U(IV) standards for the XANES
O​0​ =U=O​ ).
and EXAFS analysis. Four samples were prepared, nano-Fe​0 ​at pH ax ​ eq​

0​
5.0 and pH 7.0, nano-Fe​ + ​B. subtilis ​at pH 7.0, and ​B. subtilis a​ t
C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107 89
3. RESULTS AND DISCUSSION from surface oxidation, which was consistent with previous studies
(​Riba et al., 2008; Crane et al., 2011​). The thickness of outer shell
3.1. Characterisation was approximately 3–4 nm, based on the high resolution TEM and
XPS analysis. The surface oxidation of nano-Fe​0 ​was further
As shown by the SEM images, the nano-Fe​ particles were confirmed by XRD and XPS analy- ses. As shown in ​Fig. 1​E, the
0​

strongly aggregated (​Fig. 1​A). In the presence of ​B​. ​subtilis,​ some FTIR spectrum of the nano-Fe​0 ​did not show any obvious peaks,
nano-Fe​0 ​particles adhered to the surface of this bacterium (​Fig. whereas signif- icant differences were observed for ​B. subtilis a​ nd
0 ​
1​B). As shown in ​Fig. 1​C, the size dis- tribution of nano-Fe​0 nano-Fe​ + ​B. subtilis (​ at pH 3.5 and 7.0). The two bands at 1582
À​1 ​
particle was 20–100 nm. The surface area of nano-Fe​0 ​was 15.0 and 1407 cm​ for ​B. subtilis ​were corresponded to the
m​2​/g according to the BET anal- ysis (​Table 1​). Nano-Fe​0 ​particles asymmetrical and symmetrical C​@​O stretching bands of the
exhibited a core–shell structure, which can be clearly seen in high carboxylate groups (COO–) of the terminal amino acid (​Yu et al.,
0​
resolution TEM images (​Fig. 1​D). The EDX spectra demonstrated 2007​). However, these bands were not observed for nano-Fe​ + ​B.
that an Fe(0) core and an outer shell of iron oxide resulted subtilis​. The enhanced
90 C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107
Fig. 1. The characterisation of nano-Fe​0 ​and ​B. subtilis:​ (A and B) SEM images of nano-Fe​0 ​in the absence (A) and presence of ​B. subtilis (​ indicated by
white arrows) (B), TEM (C) and HRTEM (D) images of nano-Fe​0 ​(inset: EDX images), (E) FTIR spectra of nano-Fe​0​, ​B.​ ​subtilis ​and nano-Fe​0 ​+ ​B​. ​subtilis
before reaction with U(VI), and (F) zeta potential of nano-Fe​0 ​and ​B. subtilis​.

(​Fein et al., 1997​). ​c ​Obtained from sorption

isotherms. d​ ​Obtained from reduction

isotherms.
subtilis ​(at ​$​1230 cm​À​1​). This evidence indicated that the iron was
easily bound with the phosphate groups (​Kazy et al., 2009​). The
FTIR analysis suggested that the oxygen-containing functional
groups of ​B. subtilis o​ r EPS (i.e., carboxylate and phosphate
groups) were easily coordi- nated with Fe(II) or Fe(III) on
nano-Fe​0​. According to the zeta potentials over the studied pH
range (​Fig. 1​F), the iso- electric point (pH​pzc​) values for the
nano-Fe​0 ​and ​B​. ​subtilis w
​ ere ​$​7.9 and ​$​3.5, respectively. ​B.
intensities of the peaks at 1664, 1535 and 1384 cm​À​1 ​for nano-Fe​0 ​+
subtilis ​exhibited the negatively charged at pH > 3.5, whereas
B. subtilis ​potentially resulted from shifts in the asymmetrical and
0​
symmetrical C​@​O stretching, which generally occurred at nano-Fe​ particles was positive charge at pH<7.9. Thus, ​B. subtilis
0​
carboxylate anions coordinated with iron cations (​Kazy et al., can adhere to nano-Fe​ surface by electrostatic attraction.
2009​). A decreased intensity and red shift of the P​@​O stretching

peaks of C–PO​3​2​À ​was observed


​ for nano-Fe​0 ​+ ​B. subtilis (​ at ​$​1187
cm​À​1 ​and at ​$​1189 for pH 3.5 and 7.0, respectively) compared with 3.2.1. Removal rates
B. The effects of reaction time on the removal of U(VI) by
Table 1 Surface properties of nano-Fe​0 ​and B
​ . nano-Fe​0​, ​B.​ ​subtilis​, and nano-Fe​0 ​+ ​B. subtilis a​ s a func- tion of
subtilis.​
pH and carbonate concentration were shown in ​Fig. 2​. At
Parameter Nano-Fe​0 ​B. subtilis
1.0mmol/L Na​2​CO​3​, the removal rates of U(VI)
​ on nano-Fe​0
Particle size (nm) 20–100 3000–5000 Oxide thickness (nm) 3–4 – Surface decreased as follows: pH 7.0>pH 5.0 > pH 9.0 > pH 3.5.
area (m​2​/g) 15.0​a ​14​b ​Surface sites for sorption (sites/nm​2​)​c ​0.053 6.06 Approximately 98% (pH 7.0), 80%
Surface sites for reduction (sites/nm​2​)​d ​62.14 0.14

a​
Measured by N​2 ​BET. b​ ​Assumed value
C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107 91
Fig. 2. The kinetics of U(VI) removal by nano-Fe​0 ​(A, D and G), by nano-Fe​0 ​+ ​B. subtilis (​ B, E and H), and by ​B. subtilis (​ C, F and I) at 1.0, 5.0 and 10.0
​ 25 °C, and ​m/​ ​V =
mmol/L Na​2​CO​3​, respectively, [U(VI)]​0 ​= 150 lmol/L, ​T = ​ 2 g/L.
3.2. Batch macroscopic experiments
Consistent (pH 5.0), 40% (pH 9.0) and 10% (pH 3.5) of the U(VI) was
with previous reports (​Gu et al., 1998; Yan ​removed after 5 h (​Fig. 2​A). However, approximately 95%,
et al., 2010​), the kinetics of U(VI) removal by nano-Fe​0 ​85%, 55% and 30% of the U(VI) was removed in the
were described by pseudo-first-order model (​R​2 ​> 0.98), nano-Fe​0 ​+ ​B.​ ​subtilis t​ reatments at pH 7.0, pH 5.0, pH
which indicates that the removal of U(VI) by nano-Fe​0 ​9.0 and pH 3.5, respectively, following only 1.5h
was controlled by the transition of free aqueous U(VI) to (​Fig. 2​B). By contrast, the removal percentage of U(VI)
​ as lower than those of nano-Fe​0 ​and
adsorbed state (​Rudzinski and Plazinski, 2006​). The fitting by ​B. subtilis w
parameters were shown in ​Table 2​. However, U(VI) nano-Fe​0 ​+ ​B​. ​subtilis​, whereas the rapid removal rate
removal by nano-Fe​0 ​+ ​B. subtilis a​ nd ​B. subtilis ​cannot (removal equilibrium reached at approximately 30min)
be satisfactorily fit by the pseudo-first-order model, which was observed (​Fig. 2​C). Approximately 70%, 45%, 40%
suggested that ​B​. ​subtilis ​could influence the interaction and 10% of U(VI) was removed by ​B. subtilis ​at pH 7.0,
mechanisms between U(VI) and nano-Fe​0​. pH 5.0, pH 9.0 and pH 3.5, respectively. Compared to
The removal rate of nano-Fe​0​, ​B. subtilis​, and nano-Fe​0​, the more rapid removal rate of nano-Fe​0 ​+ ​B.
nano-Fe​0 ​+ ​B. subtilis d​ ecreased with increasing Na​2​CO​3 subtilis
​ ​ as also observed. Therefore, the fast removal rate of ​B​. ​subtilis
w
and nano-Fe​0 ​+ ​B. subtilis ​for U(VI) could be
concentration. At 5.0 mmol/L Na​2​CO​3​, 48, 15 and 2 h were required to remove 80%, 90% and 70% of the U(VI), respec-
attributed to the abundant oxygen-containing functional
tively, in the nano-Fe​0​, nano-Fe​0 ​+ ​B. subtilis a​ nd ​B. sub- g​ roups of the cell surface. When the finite sorption sites
​ ere occupied, the removal rate of nano-Fe​0 ​+ ​B. subtilis ​was
tilis t​ reatments at pH 7.0 (​Fig. 2​D–F). At 10mmol/L on ​B.​ ​subtilis w
predominated by nano-Fe​0​.
Na​2​CO​3​, 80%, 90% and 70% lowing 96, 48 and 12h in of the U(VI) was the nano-Fe​0​, removed fol- nano-Fe​0 ​+ ​B.
Table 2 Fitting parameters of U(VI) removal or reduction on nano-Fe​0 ​in the absence or presence of ​B. subtilis ​based on the pseudo-first-order rate
law.
Removal or reduction Na​2​CO​3 (mM)
​ pH Rate constants (h​À​1​) Half-lives (h) ​R​2 ​U(VI) immobilisation (nano-Fe​0​) 1.0 3.5 0.020 34.66 0.97 5.0 0.320
2.16 0.99 7.0 0.781 0.89 0.95 9.0 0.080 8.66 0.90 5.0 3.5 0.018 38.51 0.92 5.0 0.050 13.86 0.98 7.0 0.047 14.75 0.97 9.0 0.029 23.90 0.95 10.0 3.5
0.019 36.48 0.89 5.0 0.018 38.51 0.99 7.0 0.016 43.32 0.99 9.0 0.008 86.64 0.94
U(VI) reduction (nano-Fe​0​) 1.0 3.5 0.012 57.76 0.89 5.0 0.155 4.47 0.99 7.0 0.323 2.15 0.97 9.0 0.050 13.86 0.92 5.0 3.5 0.012 57.76 0.96 5.0
0.041 16.90 0.98 7.0 0.032 21.66 0.97 9.0 0.019 36.48 0.95 10.0 3.5 0.015 46.21 0.97 5.0 0.016 43.32 0.99 7.0 0.015 46.21 0.98 9.0 0.008 86.64
0.96
U(VI) reduction (nano-Fe​0 ​+ ​B. subtilis​) 1.0 3.5 0.040 17.33 0.80 5.0 0.130 5.33 0.86 7.0 0.084 8.25 0.93 9.0 0.047 14.75 0.86 5.0 3.5 0.039 17.77
0.90 5.0 0.040 17.33 0.92 7.0 0.021 33.01 0.97 9.0 0.010 69.31 0.94 10.0 3.5 0.024 28.88 0.78 5.0 0.012 57.76 0.88 7.0 0.010 69.31 0.98 9.0 0.003
231.05 0.86
92 C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107
subtilis ​and ​B. subtilis ​treatments at pH 7.0, respectively (​Fig.
2​G–I). However, the removal of U(VI) on nano-Fe​0 ​and nano-Fe​0 ​+ (​Fig. 3​A– C).
​ Thus, the decreased removal rates with increasing
con- centration of Na​2​CO​3 can be attributed to the electrostatic
B. subtilis ​at pH = 3.5 was slightly influ- enced by Na​2​CO​3 ​
repulsion between negatively charged U(VI)–carbonate spe- cies
solution. The strong inhibition of U(VI) removal could result from
the formation of a U(VI)–carbonate species, which were more and negative charged surface of nano-Fe​0​. However, the subtle
stable in aque- ous solutions and were not favourable for sorption impacts of Na​2​CO​3 ​on the U(VI) species were observed at pH < 4.0
0 ​
on nano-Fe​ (​Yan et al., 2010​). ​Fig. 3 ​showed the distribution of over the investigated Na​2​CO​3 concen-
​ trations, which could explain
U(VI) species calculated by MINEQL + 3.0 varied with pH and the the weak effects of the Na​2​CO​3 ​concentrations on U(VI) removal at
Na​2​CO​3 and
​ U(VI) concentrations. When the concentration of pH 3.5 for nano-Fe​0​, nano-Fe​0 ​+ ​B. subtilis ​and B
​ . subtilis​.
U(VI) was 150 lmol/L (the experimental concentration for
kinetics), the concentration of the U(VI)–hydroxyl species was 3.2.2. Reduction rates
significantly decreased as the increase of Na​2​CO​3 concentration,
​ The amounts of adsorbed U(VI) can be determined by
extracting the uranium-containing solid samples with 0.1 mol/L
whereas more U(VI)– carbonate species (e.g., UO​2​CO​3​(aq),
Na​2​CO​3 solution
​ (​Gu et al., 1998​). Therefore, the amount of U(VI)
UO​2​(CO​3​)​34​​ À ​and UO​
​ 2​(CO​3​)​2​2​À ​species) were observed at pH > 4.0 reduced to U(IV) can be determined
as the difference between the initial removal and extraction
concentrations. The U(VI) reduction rates, as indicated by the time cells were attached with nano-Fe​0 ​at 10 min (​Fig. S2, SI​). In
evolution of the residual U(VI) solutions ([U(VI)]​ex​), were shown addition, EPS secreted by ​B.​ ​subtilis ​can also bind with nano-Fe​0​.
0 ​ 0 ​
in ​Fig. 4 ​for nano-Fe​ and nano-Fe​ + ​B. subtilis.​ The reduction As discussed in the FTIR analysis, these functional groups from ​B​.
amounts for nano-Fe​0 ​+ ​B​. ​subtilis a​ t pH 5.0, pH 7.0 and pH 9.0 subtilis ​might occupy some active sites (i.e., structural Fe(II))
(​$​42%, 45%, and 24%) were lower than those of the nano-Fe​0 (​White and Peterson, 1996; Charlet et al., 1998​) on the oxide shell
(​$​65%, 90% and 35%) at 1.0 mmol/L Na​2​CO​3 at 8 h, suggesting of nano-Fe​0​, which would decrease the reduc- tion capacity of the

that ​B.​ ​subtilis i​ nhibited the reduction of U(VI). However, this nano-Fe​0​. Structural Fe(II) in the oxide shell of the nano-Fe​0 ​was
inhibition was not observed at pH 3.5 (i.e., both ​$​30% and ​$​29% more effective for reducing U(VI) (​Liger et al., 1999; Boland et al.,
reduced U(VI) for nano-Fe​0 ​and nano-Fe​0 ​+ ​B.​ ​subtilis,​ 2014​). The reduction rates for nano-Fe​0 ​and nano-Fe​0 ​+ ​B. subtilis
respectively). As shown in ​Fig. S1 of SI​, the reduction capacity of
decreased as the Na​2​CO​3 concentration
​ increased at pH>3.5.
B. subtilis ​for U(VI) (9%) can be negligible as compared with
nano-Fe​0 ​(90%). The decrease in the reduction amounts for However, the ​ reduction rate was only slightly influenced by
0​
nano-Fe​ + ​B​. ​subtilis m
​ ay result from the interactions between ​B​. Na​2​CO​3 at
​ pH 3.5. At pH 7.0, approximately 5, 60 and 160 h were
subtilis ​and nano-Fe​0 ​at high pH. Approximately 65% of ​B​. ​subtilis
C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107 93
Fig. 3. The distribution of U(VI) species in aqueous solution at 1.0 (A), 5.0 (B) and 10.0 (C) mmol/L Na​2​CO​3 ​for [U(VI)]​0 ​= 150 lmol/L; and at
​ 1.0
mmol/L Na​2​CO​3 ​for [U(VI)]​0 ​= 450 lmol/L (D).
required for the nano-Fe​0 ​to reduce 80% of the U(VI) at Na​2​CO​3 conditions, whereas extreme acidic and basic conditions can make
concentrations of 1.0, 5.0 and 10.0mmol/L, respectively (​Fig. 4​A, C the enzyme inactivation. As a control, heat killed ​B.​ ​subtilis ​cells
and E). The decrease in U(VI) reduction could result from the did not present the reduction of U(VI) over a wide range of pH
inhibition of U(VI) sorption due to Na​ CO​ . from 3 to 10 (​Fig. S3, SI​). The relatively high reducing amounts of
2​ 3​
U(VI) on nano-Fe​0 ​(​$​70–90%) from pH 5.0 to 7.0 potentially
3.2.3. pH effect resulted from the high sorp- tion of U(VI). ​Li and Zhang (2007)
0 ​
The effects of pH on the removal and reduction of U(VI) by determined that the oxide shell of nano-Fe​ offered surface
nano-Fe​0​, ​B.​ ​subtilis a​ nd nano-Fe​0 ​+ ​B.​ ​subtilis a​ t 24 h were shown coordination and sorption sites for heavy metal ions. The density of
the neg- ative charge on the oxide shell increases as the pH
in ​Fig. 5​. The removal of U(VI) by nano-Fe​0​, ​B.​ ​subtilis a​ nd
increases and the solubility of U(VI) decreases (​Kanel et al., 2006;
nano-Fe​0 ​+ ​B​. ​subtilis i​ ncreased with increas- ing pH from 3.5 to
Scott et al., 2011​), which favoured U(VI) sorption and/or
7.0, whereas decreased removal was observed at pH > 7.0 (​Fig.
co-precipitation on the oxide shell at high pH (​Shao et al., 2014​).
5​A). ​Fig. 5​B showed the corre- sponding reducing amounts of
The decreased sorption of U(VI) at pH > 7.0 may be attributed to
U(VI) to U(IV). The increased reduction of U(VI) on nano-Fe​0 ​and the electrostatic repulsion between the negative oxide shell and the
nano-Fe​0 ​+ ​B​. ​subtilis w ​ as observed at pH 3.5–7.0, whereas the
reducing capacity of ​B.​ ​subtilis ​was limited (​$​10% reduced U(VI) negative U(VI) species (i.e., UO​2​(CO​3​)​3​4​À ​and UO​2​(CO​3​)​2​2​À​) (​Fig.
at pH 7.0). ​Mangaiyarkarasi et al. (2011) ​demonstrated that the
et al., 2014​). In addition, the U(VI) reduction was
reduction of Chromate by ​B​. ​subtilis ​was attributed to the 3​A) (​Song ​
0​
membrane bound enzymes. The reduction of U(VI) on ​B​. ​subtilis triggered by the sorption of U(VI) on the nano-Fe​ surface (​Yan et
might be mediated by al., 2010​). ​Riba et al. (2008) ​determined that U(VI) was
U(VI) reductase on the cell membrane under circumneutral
94 C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107
Fig. 4. The kinetics of U(VI) reduction on nano-Fe​0 ​at 1.0 (A), 5.0 (C) and 10.0 (E) mmol/L Na​2​CO​3​; and on nano-Fe​0 ​+ ​B. subtilis a​ t 1.0 (B), 5.0
​ (D) and
​ 25 °C, and ​m/​ ​V =
10.0 (F) mmol/L Na​2​CO​3​, [U(VI)]​0 ​= 150 lmol/L, ​T = ​ 2 g/L.
9.0 ​Â ​10​8 ​cells/mL. Therefore, the increased removal of U(VI) on
nano-Fe​0 ​+ ​B. subtilis ​potentially resulted from the increased
sorption site density of the functional groups on ​B. subtilis​. As
shown in ​Fig. 6​B, the removal of U(VI) nano-Fe​0 ​+ ​B. subtilis ​at pH
7.0 (​$​80% at 0.6 ​Â ​10​8 ​cells/mL) was still lower than the nano-Fe​0
(​$​100%). This inhibition effect potentially resulted from the
adhesion between the nano-Fe​0 ​and ​B. subtilis,​ which
occupied the sorption sites. As the ​B. subtilis c​ oncentration
increased, a slight inhibition effect was observed due to the greater
number of sorption sites on ​B. subtilis​. Thus, the removal of U(VI)
reached nearly 100% at 3.0 ​Â ​10​8 ​cells/mL. However, the inhibitory
effect of nano-Fe​0 ​+ ​B. subtilis ​on U(VI) reduction was
strengthened as the ​B. subtilis c​ oncentration increased. The
reduction of U(VI) to U(IV) was significantly inhibited by the
adsorbed on the oxide shell, which then mediated the trans- fer of
nano-Fe​0 ​+ ​B. subtilis ​at concentrations of 6.0, 7.0 and 9.0 ​Â ​10​8
electrons from the Fe​0 ​core to U(VI). The formation of surface
cells/mL. As indicated in previous discussion, a favourable
complexes provided a favourable environment for electron transfer
coordination environment for the formation of structural Fe(II) or
from iron to uranium (​Liger et al., 1999​).
Fe(III) surface complexes with oxygen-containing groups on ​B.
The presence of ​B​. ​subtilis ​was noted to increase the U(VI) subtilis ​was provided at high pH, which decreased the reducing
removal on the nano-Fe​0​, but inhibited the U(VI) reduction at pH > capacity of nano-Fe​0​. The greater ​B. subtilis ​concentration provided
4.5 (​Fig. 5​). At pH 5.0, 70% of U(VI) was reduced by nano-Fe​0 more functional groups for binding with structural Fe(II) or Fe(III),
compared to nano-Fe​0 ​+ ​B​. ​subtilis ​(​$​50%) and ​B​. ​subtilis ​(10%). which further inhibited the reduction of U(VI) to U(IV). Sorption
The enhanced removal of U(VI) on nano-Fe​0 ​+ ​B​. ​subtilis c​ an be of U(VI) was the main removal mecha- nism for ​B. subtilis a​ t pH
attribu- ted to the increased sorption sites from the functional 7.0 because only ​$​10% of the U(VI) was reduced. The charged
groups of ​B.​ ​subtilis,​ as indicated by ​Table 1​. The increased property of ​B. subtilis w ​ as derived from a variety of oxygen- and
​ ith increasing pH was due to the phosphoryl-containing functional groups. As a Gram-positive
sorption of U(VI) on ​B.​ ​subtilis w
deprotonation of functional groups of cell wall, resulting in the bacterium, the cell wall of ​B. subtilis w ​ as characterized by the
increase of massive surface sites. Likewise, the chemical bonding components of peptidoglycan (i.e., ​N​-acetylglucosamine and
between structural Fe(II) or Fe(III) of nano-Fe​0 ​and N​-acetylmuramic acid), crosslinks of short peptides and polymers
oxygen-containing groups of the surface or EPS secreted by ​B​. such as teichioic acid, tei- churonic acid and lipoteichoic acid (​Yee
subtilis ​also increased with increasing pH (especially at pH > 3.8). and Fein, 2001​). The surface reaction sites derived from these
Thus, the inhibited reduction of nano-Fe​0 ​+ ​B.​ ​subtilis m ​ ay be polymers and the EPS secreted by ​B. subtilis ​into the external aque-
attributed to the complex- ation of structural Fe(II) with ous solution can coordinate with U(VI) ions. ​Leone et al. (2007)
oxygen-containing groups exuded by or as surface molecular of ​B.​ based on surface-specific molecular-scale measure- ments
subtilis​. identified three surface reaction sites, including ​„​COOH, ​„​NH​+ ​and
„​PO​À ​groups. For nano-Fe​0​, the only surface site (amphoteric
3.2.4. Effect of B. subtilis and EPS „​FeOH group, mainly resulted from its oxide-shell in contact with
water mole- cules). The FTIR results also showed that the
The effects of the ​B. subtilis c​ oncentrations on the removal
0​ phosphate and carboxylate groups of ​B. subtilis o​ r EPS were
and reduction of U(VI) by nano-Fe​ + ​B. subtilis a​ t 24h were shown
inclined to coordinate ​„​FeOH groups of nano-Fe​0​. ​Parikh and
in ​Fig. 6​A and B. At pH 3.5 (​Fig. 6​A), the removal and reduction
Chorover (2006) ​demonstrated that the interaction of ​B​. ​subtilis a​ nd
percentages of U(VI) on nano-Fe​0 ​were ​$​30 and 24%, respectively,
Fe-oxides was mediated by the formation of inner-sphere
which were higher than those of ​B. subtilis ​(​$​25% for removal and
Fe-phosphate/phosphonate complexes and/or terminal
$​5% for reduction). However, approximately 90% of U(VI) was
Fe-phosphate/phosphonate and phosphodiester groups. The
removed by nano-Fe​0 ​+ ​B. subtilis ​at pH 3.5 at 9.0 ​Â ​10​8 ​cells/mL.
complexation of methylphosphonic acid/phos- pholipid vesicle with
It was also observed that the reducing amount of U(VI) on
iron oxide mineral was also evidenced
nano-Fe​0 ​+ ​B. subtilis (​ ​$​27%) was slightly lower than nano-Fe​0 ​at
C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107 95
Fig. 5. The effects of pH on U(VI) removal (A) and reduction (B) on nano-Fe​0​, nano-Fe​0 ​+ ​B. subtilis​, and ​B. subtilis​, where [U(VI)]​0 ​= 150 lmol/L, ​m/​ ​V =

2 g/L, ​T ​= 25 °C, and ​t ​= 24 h.


EPS concentration on U(VI) removal or reduction by nano-Fe​0 ​was
investigated by batch tech- niques (​Fig. 6​C and D). As shown in
Fig. 6​C, the removal of U(VI) on nano-Fe​0 ​+ EPS-free ​B. subtilis
(37%) at pH 3.5 was larger than that of nano-Fe​0 ​(30%) in ​Fig. 6​A.
It was also observed that the removal of U(VI) increased with
increasing EPS concentration, suggesting that both EPS and
EPS-free ​B. subtilis p​ rovided sorption sites for U(VI). A slight
decrease was observed for the reduction of U(VI) with increasing
EPS concentration. As shown in ​Fig. 6​D, the reduction amount of
U(VI) decreased from 56% to 5% with increasing EPS
concentration from 0.05 to 0.5 mg/L, indicating that EPS greatly
inhibited the reduc- tion activity of nano-Fe​0​. The similar trend was
also observed for ​B. subtilis ​(F
​ ig. 6​B). The reduction amount of
U(VI) (60%) by nano-Fe​0 ​+ ​B. subtilis (​ EPS-free) was lower than
nano-Fe​0 ​(74%), suggesting that the oxygen-containing functional
groups of ​B. subtilis s​ urface also inhibited the reduction of U(VI)
on nano-Fe​0​.
Omoike and Chorover (2004) ​also demonstrated EPS secreted from
​ ere capable of binding iron oxide film. These results
B. subtilis w
indicated that the inhibited reduction of U(VI) can be caused by the
complexation of nano-Fe​0 ​with EPS or oxygen-containing groups of
B. subtilis s​ urface.

3.2.5. Effects of temperature and U(VI) concentrations


The removal capacities of U(VI) varied from 150 to 450
lmol/L on nano-Fe​0 ​and nano-Fe​0 ​+ ​B. subtilis a​ t pH 5.0 and 24 h
and were shown in ​Fig. 7​. From ​Fig. 3​, the ini- tial concentrations
of U(VI), even at 450 lmol/L, were below the precipitation
concentration required for schoe- pite at pH 5.0. The removal of
U(VI) by nano-Fe​0 ​and nano-Fe​0 ​+ ​B. subtilis ​significantly
by previous studies (​Barja et al., 1999; Cagnasso et al., 2010​). increased as the initial U(VI) concentration increased (​Fig. 7​). The
Hence, an increase in ​B. subtilis ​can enhance the sorption of U(VI)
maximum removal capacities of nano-Fe​0 ​and nano-Fe​0 ​+ ​B. subtilis
on ​B. subtilis a​ nd can inhibit the reduc- tion of U(VI) by nano-Fe​0​, at pH 5.0 and ​T ​= 25 °C were 215.17 and 95.64mg/g, respectively,
especially at high pH. which demonstrated that ​B. subtilis i​ nhibited the removal of U(VI)
The inhibition effect of ​B. subtilis ​on nano-Fe​0 ​may result by nano-Fe​0 ​at pH 5.0. The effects of temperature on the removal of
from EPS. Thus, the influence of EPS-free ​B. subtilis ​with variable U(VI) by nano-Fe​0 ​and nano-Fe​0 ​+ ​B. subtilis ​were shown in ​Fig. 7​.
It was observed that the removal of U(VI) by nano-Fe​0 ​and °C, indicating that U(VI) removal by nano-Fe​0 ​and nano-Fe​0 ​+ ​B.
0​
nano-Fe​ + ​B. subtilis ​were the highest at 25 °C and the lowest at 5 subtilis ​was promoted at
96 C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107

Fig. 6. The effects of the ​B. subtilis c​ oncentrations on the removal and reduction of U(VI) on nano-Fe​0 ​+ ​B. subtilis​, (A) pH = 3.5, and (B) pH = 7.0, ​t
=24h; the effects of EPS concentration on the removal and reduction of U(VI) on nano-Fe​0 ​+ ​B. subtilis ​(EPS-free, 3.0 ​Â ​10​8 ​cells/mL), (C) pH = 3.5, and
​ 25 °C, and ​t =
(D) pH = 7.0, ​T = ​ 24 h.
sorption iso- therms at pH 5.0 and 25 °C for nano-Fe​0 ​and ​B.
subtilis​, respectively. The maximum sorption capacities of
nano-Fe​0 ​and ​B. subtilis w
​ ere calculated from Langmuir model to
be 12.75mg/g and 335.25mg/g, respectively. Therefore, surface site
density of nano-Fe​0 ​and ​B. subtilis ​availability for sorption
processes was calculated to be 0.053 and 6.06 sites/nm​2​,
respectively (​Dixit and Hering, 2003​). The surface site density of ​B.
subtilis ​was comparable to previous studies reported by ​Leone et al.
(2007) ​who cal- culated the surface site density (8.52 site/nm​2​)
based on the total amounts of ​„​COOH, ​„​NH​+ ​and ​„​PO​À ​by the
potentiometric titration. Similarly, the surface site density of
nano-Fe​0 ​and ​B. subtilis a​ vailability for reduction pro- cesses was
calculated 62.14 and 0.14 sites/nm​2​, respectively. It was observed
that the site density of ​B. subtilis f​ or U(VI) sorption was two orders
higher temperatures. The improved performance of nano-Fe​0 ​for of magnitude higher than that of nano-Fe​0​, suggesting the great
treating heavy metal (​Rangsivek and Jekel, 2005​), trichloroethene sorption ability of ​B. subtilis t​ han nano-Fe​0​. This results may
(​Truex et al., 2011​) and nitrite (​Liang et al., 2008​) was observed explain why the sorption of U(VI) was the main removal
with an increase in tem- perature. ​Figure S4 in SI ​showed the U(VI)
mechanism for nano-Fe​0 ​+ ​B. subtilis​. However, the surface site
density of nano-Fe​0 ​for U(VI) reduction (62.14 sites/nm​2​) was great nano-Fe​0 ​+ ​B. subtilis ​(pH 3.5 and 7.0) were lower than those from
larger than that of ​B. subtilis (​ 0.14 sites/nm​2​), which indi- cated that the nano-Fe​0​, indicating that the presence of ​B. subtilis i​ nhib- ited
more reducing ability of nano-Fe​0 ​was observed. As shown in ​Fig. the corrosion of nano-Fe​0​, potentially due to the com- plexation of
7​, approximately 100% of U(VI) was removed by nano-Fe​0 ​at 25 Fe(II) or Fe(III) with the oxygen-containing functional groups of ​B.
°C even at high U(VI) loading conditions due to its high reducing
subtilis​. According to ​Fig. 3​A, schoepite (UO​3​Á​2H​2​O) was the
ability. ​Gu et al. (1998) ​determined that no maximum U(VI)
removal capac- ity could be defined as long as sufficient amounts
thermodynamically preva- lent ​ precipitate that resulted from
of Fe​0 ​were present in the system to maintain an electron flow and a oversaturated U(VI) spe- cies at pH > 5.0. ​Riba et al. (2008) ​proved
favourable reducing environment. Thus, the Fe(0) core could be
that the gradual precipitation of UO​3​Á​2H​2​O became significant
considered as an electron bank for the oxide shell (i.e., structural
Fe(II) or Fe(III)), which in turn reduces U(VI) to U(IV). By UO​3​Á​2H​2​O was not detected in the XRD
after 7 days. However,

contrast, the presence of ​B. sub- tilis ​may block the electron flow
patterns of the samples. Instead, the low intensity of peak at 2h =
due to the complexation of oxygen-containing functional groups
28.1° for U(VI)-reacted nano-Fe​0 ​at pH 7.0 could be assigned to
with structural Fe(II) or Fe(III). Consequently, the active sites of
UO​2(s) ​(​Frazier et al., 2005​), which suggested that the removal of
nano-Fe​0 ​can- not be regenerated, which results in the inhibition of
reduc- tion reaction. U(VI) on nano-Fe​0 ​at pH 7.0 could be attributed to the formation of
3.3. Spectroscopic Analysis reductive UO​2(S) precipi-
​ tates. The formation of precipitates
(IV)​
(U​ O​2​) was further corroborated by the EXAFS analysis.
3.3.1. XRD Analysis Therefore, the aque- ous U(VI) was adsorbed on the nano-Fe​0 ​and
The XRD patterns of the nano-Fe​0 ​and nano-Fe​0 ​+ ​B. B. subtilis s​ urfaces first.
subtilis ​before and after reaction were shown in ​Fig. 8​A. The The XRD results indicated that corrosion of nano-Fe​0 ​was
0 ​
corrosion products of nano-Fe​ included predominant Fe, accelerated, whereas the high level removal of U(VI) on nano-Fe​0
magnetite/maghemite and lepidocrocite, which were consistent was observed (​Fig. 7​B). This contradictory phenomenon indicated
with the results obtained from the TEM images. For the that the Fe(0) was unlikely to reduce U(VI) directly. ​Moura et al.
U(VI)-reacted nano-Fe​0​, relatively higher intensi- ties of magnetite (2005) ​demonstrated that active structural Fe(II) was formed by the
and lepidocrocite were observed at pH 3.5, which suggested that electron transfer of Fe(0) to Fe(III) of iron oxide:
the corrosion of nano-Fe​0 ​is accel- erated at low pH (​Matheson and
Fe​ð​0​Þ þ ​Fe​ð​III​Þð​oxide​Þ ! ​Fe​ð​II​Þ þ ​structural Fe​ð​II​Þð​oxide​Þ
Tratnyek, 1994; Song and Carraway, 2005​). In addition, the
ð​4​Þ
intensities of magnetite/- maghemite peaks from the U(VI)-reacted
C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107 97

Fig. 7. The effects of the initial U(VI) concentration and temperature on the removal amount of U(VI) by nano-Fe​0 ​+ B
​ . subtilis (​ A) and nano-Fe​0 ​(B) at pH
= 5.0, ​m​/​V ​= 2 g/L, and ​t =
​ 24 h; open triangles: the percentage of U(VI) removal at 25 °C.
electrons to U(VI).

3.3.2. TEM analysis


The TEM-SAED images of nano-Fe​0 ​and nano-Fe​0 ​+ ​B.
subtilis ​after reaction with U(VI) were shown in ​Fig. 8​B and C. As
shown in ​Fig 8​B, the aggre- gated nano-Fe​0 ​nanoparticles were
observed accompanied with some precipitate. The inset selected
area electron diffraction (SAED) pattern from these precipitate
displayed diffuse powder rings. The ​d​-spacing and intensities of
ring electron diffraction pattern were matched well with (hkl)
indices of UO​2(s) such
​ as (111), (200), (220) and (113)
planes (​Lee et al., 2010; Alessi et al., 2012​). The ring-pattern
structures revealed the formation of poor crys- tallinity or
nanoparticles (​Lee et al., 2010​), which was con- sistent with our
XRD results. In contrast to nano-Fe​0​, few precipitates were
observed on the surface of ​B. subtilis ​for the system of nano-Fe​0 ​+
B. subtilis (​ ​Fig. 8​C). The inset SAED pattern of ​B. subtilis
displayed a non-crystaline solid phase, indicating that U(VI) was
predominantly as non-uraninite U(IV) species on ​B. subtilis.​ The
SAED pat- tern from precipitates in nano-Fe​0 ​+ ​B. subtilis e​ xhibited
a broad and diffuse ring relative to that of pure nano-Fe​0​,
suggesting the relatively low bulk abundance of uraninite. ​Bargar et
Therefore, it should be the Fe(0) core that provide electron via al. (2013) ​also determined that U(VI) was reduced to monomeric
indirect corrosion to regenerate structural Fe(II), enabling U(IV) species (complexes or nanoscale pre- cipitates) likely
continued reactivity of nano-Fe​0​. The increased intensity of associated with biomass and to an ordered species resembling
magnetite after reaction may result from the indirect corrosion of uraninite. The presence of multiple products suggested multiple
bulk Fe(0) core. ​Crane et al. (2011) ​also determined the great redox transition pathways. ​B. subtilis a​ nd/or these EPS could
removal of U(VI) on nano-Fe​0 ​due to the supply of electron form inhibit the reducing reac- tivity of nano-Fe​0​. The result indicated
Fe(0) core to near-stoichiometric magnetite surface. It was reported that the biosorption of U(VI) on the oxygen-containing functional
that the interface between Fe(0) core and magnetite (oxide shell) groups of ​B. subtilis r​ epresented a large contribution for the
can mediate electron transfer from Fe(0) to the oxide shell (​Moura removal of U(VI) by nano-Fe​0 ​+ ​B. subtilis.​ As shown in ​Fig. S5 of
et al., 2005​). Magnetite can be an ​n ​or ​p s​ emicon- ductor, and the SI​, energy dispersive X-ray spectrum (EDS) mapping of ​B. subtilis
ohmic junction with very low resistance was formed on the showed that oxygenated- and phosphorous- containing groups were
interface of metal-magnetite (​White, 1990; Sutton and Balluffi, main coordination sites for U(VI) surface complexes, which was
1995​). The production of struc- tural Fe(II) during the electron further demonstrated by FTIR analysis (​Fig. S6 of SI​). ​Fowle et al.
transfer from Fe​0 ​to iron oxide has already been demonstrated as a (2000) ​also evi- denced that the sorption of U(VI) on ​B.​ ​subtilis
precursor mech- anism in Cr(VI) reduction (​dos Santos Coelho et was coordi- nated with neutral phosphate and deprotonated
al., 2008​) and in the Fenton reaction (​Moura et al., 2005​) by carboxyl functional groups of ​B.​ ​subtilis​. These observations
metallic iron. However, the coordination of ​B. subtilis ​with struc- showed that reductive precipitation was a major contributor to
tural Fe(II) or Fe(III) blocked the electron flow and pre- vented U(VI) removal by nano-Fe​0​, whereas the sorption process
further corrosion of nano-Fe​0​. Therefore, it was assumed that the dominated the removal of U(VI) in the presence of ​B​. ​subtilis​.
structural Fe(II) of the outer layer of nano-Fe​0 ​was donated
98 C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107
Fig. 8. (A) XRD patterns of the control (un-reacted nano-Fe​0​) and U(VI)-reacted samples at pH 3.5 and 7.0, M (magnetite/c-maghemite) and L
(c-lepidocrocite); TEM images of U(VI)-reacted samples with corresponding SAED pattern (inset), (B) nano-Fe​0​, (C) nano-Fe​0 ​+ ​B. subtilis​.
3.3.3. XPS Analysis
film of nano-Fe​0 ​than UO​2​2+​, which contributed to
​ the subsequent
The XPS analyses of nano-Fe​0 ​and nano-Fe​0 ​+ ​B. sub- tilis
reductive reaction. Additionally, the sur- face complexes
before and after their reaction with U(VI) at pH 3.5 and 7.0 were
(​„​[Fe​(II)​OU​(VI)​O​2​OH]) between the U(VI)-hydroxyl species and
shown in ​Fig. 9​A. For all of the samples after the reaction, the
nano-Fe​0 ​may be more kineti- cally efficient for the occurrence of
curve fitting results of the U 4f​7/2 and
​ U 4f​5/2 ​peaks clearly reductive reactions due
to the donation of electron density from OH​À ​groups (​Liger et al.,
displayed the non-stoichiometric U(IV) centred
​ at 380.4 ± 0.3 and
1999​). ​Liger et al. (1999) ​determined that the surface complexes of
391.3 ± 0.3 eV, and the U(VI) located at 382.2±0.3 and
„​(Fe​III​OFe​II​OH)​0 ​were more efficient reductants than
393.1±0.3eV(​Allen et al., 1974, 1981; Riba et al., 2008​) for all of
the samples. The evi- dence showed that U(IV) phase was also „​(Fe​III​OFe​II​)​+​because the reactivity of the structural Fe(II) was
presented by U 5f line (centred at 1.5eV) at surfaces of these enhanced by the donation of electron density from OH​À ​groups.
samples. Hexavalent U with a U 5f​0 ​electron configuration didn’t Compared with nano-Fe​0​, the higher proportion of U(VI) on
produce a U 5f peak, whereas tetravalent U with a U 5f​2 nano-Fe​0 ​+ ​B. subtilis ​at pH 3.5 and 7.0 indicated that U(VI)
configuration was observed (​Neal et al., 2004​). As shown in ​Fig. sorption was the main mechanism for the removal of U(VI)
0​
S7​, the presence of U 5f line at the spectra of U(VI)-reacted bynano-Fe​ in the presence of ​B. subtilis​, which was ascribed to the
samples compared with U(VI)-free samples revealed the reduction greater number of sorption sites provided by ​B. subtilis ​as discussed
of U(VI). Therefore, U 4f peaks at 380.4 ± 0.3 and 391.3 ± 0.3 eV above. For the nano-Fe​0 ​+ ​B. subtilis ​at pH 7.0, the amounts of
were contributed to U(IV) phase. These results revealed that both U(IV) greatly decreased compared with nano-Fe​0 ​at pH 7.0,
sorption and reduc- tive precipitation of U(VI) contributed to the whereas the decrease of U(IV) was not obvious at pH 3.8,
removal of aqueous U(VI) by nano-Fe​0 ​in the absence and presence demonstrating the inhibition effect of ​B. subtilis o​ n U(VI) reduction
of ​B. subtilis​. Consistent with the kinetics data of the reduc- tion, by nano-Fe​0 ​at high pH. A detailed Fe 2p XPS analysis of the
the ratios of U(IV)/U(VI) for the nano-Fe​0 ​at pH 7.0 were larger unreacted nano-Fe​0 ​and U(VI)-treated nano-Fe​0 ​in the absence or
than those at pH 3.5, suggesting that the reduc- tive reaction presence of ​B. subtilis a​ t pH 7.0 was shown in ​Fig. 9​B. The Fe 2p
occurred easily at neutral pH (​Riba et al., 2008​). Previous reports
demonstrated that the affinity of the U(VI)-hydroxyl species (i.e., peaks displayed broad Fe 2p​3/2 ​and Fe 2p​1/2 ​lines located
​ at 710.8 ±

3+​ 5+​
0.2 and 724.4 ± 0.2 eV, respectively, that were assigned to
(UO​2​)​2​(OH)​2​2+​, (UO​
​ 2​)​2​OH​ , (UO​2​)​3​(OH)​4​2+ ​and (UO​2)​​ 3​(OH)​ ) to Fe(II)/Fe(III)-bearing oxides, as reported in previous works
adsor- bent at high pH was stronger than that of the UO​2​2+ ​species (​Missana et al., 2003; Scott et al., 2005​). Concurrently, an Fe
2p​3/2​peak of metallic iron (Fe(0)) was observed at 706.9 ± 0.2 (​Li
at low pH (​Ding et al., 2014; Sun et al., 2014b​). Therefore, the
and Zhang, 2007​). The peak at 719.7 ± 0.2 eV may result from the
U(VI)-hydroxyl species was more rapidly adsorbed on the oxide
overlap of oxidised iron (Fe 2p​3/2​) and zerovalent iron (Fe 2p​1/2​) reported that oxide shells can protect or preserve the Fe(0) core,
(​Egert and Panzner, 1982​). The Fe(0) peak was also exam- ined at prolonging the per- formance of nano-Fe​0 ​for U(VI) aqueous
0​
the surface of the U(VI)-treated nano-Fe​ in the presence or absence remediation (​Li and Zhang, 2007​). The binding energy of nano-Fe​0
of ​B. subtilis ​indicated that the nanoparticles can still provide + ​B. subtilis a​ t pH 7.0 (​$​709.68eV) was lower than that of
electrons if favourable condi- tions were supplied. It had been
C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107 99
Fig. 9. (A) Curve fitting of the U 4f XPS peaks for nano-Fe​0 ​and nano-Fe​0 ​+ ​B. subtilis;​ (B) curve fit of the Fe 2p peaks for the samples at pH = 7.0 and
with 150 lmol/L and ​m​/​V ​= 2 g/L.
nano-Fe​0 ​at pH 7.0 (​$​710.88 eV), indicating the complexa- tion of EXAFS spectra of these samples were shown in ​Fig. 10​B and the
structural Fe(II) or Fe(III) with oxygenated func- tional groups on corresponding parameters were tabulated in ​Table 3​. The EXAFS
0 ​
B. subtilis.​ Compared with the U(VI)-treated nano-Fe​0​, a higher spectra of nano-Fe​ at pH 5.0 and 7.0 displayed similar features,
0​
proportion of Fe(II) was observed on nano-Fe​0 ​+ ​B. subtilis,​ which whereas slight differences in the features of nano-Fe​ + ​B​. ​subtilis
suggested more Fe(II) on the nano-Fe​0​complexes with the (pH 7.0) and ​B​. ​subtilis (​ pH 7.0) were observed. As shown in ​Fig.
oxygen-containing functional groups of ​B. subtilis​. The Fe(II) 10​B, the FT features of U​(VI)​O​ 2+ ​
2​ at ​$1​ .4 and 1.9 A ̊ ​can be
complexes inhibit the reduction of U(VI) to U(IV) and the
​ by ​$​2 axial oxygen atom (O​ax​) at ​$​1.79 A ̊ ​and ​$​6
oxidation of Fe(II) to Fe(III). Therefore, the inhi- bition reduction satisfactorily fit
of U(VI) by ​B. subtilis m ​ ay be attributed to the complexation ̊ ​
equatorial oxygen atom (O​eq​) at ​$2​ .30 A , respectively, which
between structural Fe(II) or Fe(III) and ​B. subtilis​, which blocked
the electron transport chain from the Fe​0 ​core to U(VI). ̊ ​ ̊ ​
agreed with the distances (1.70–1.81A and 2.41– 2.43 A ,
respectively) reported for other uranyl aqueous spe- cies (​Allen et
3.3.4. XANES and EXAFS Analysis al., 1997; Antonio et al., 2001; Sun et al., 2015​). The FT features at
The normalized U L​III​-edge XANES spectra for the samples ̊ ​ ̊​
1.6 and 3.7A for U​(IV)​O​2​(s) can be fit by ​$​8.0 O at 2.35 A and
reacted with the U(VI) solutions (nano-Fe​0​at pH 5.0 (a) and 7.0 (b),
̊ ​
nano-Fe​0 ​+ ​B. subtilis ​at pH 7.0 (c), ​B. subtilis ​at pH 7.0 (d)) and $​10.9 U at 3.87 A , respectively, which was consistent with the

the standard references (i.e., U​(VI)​O​2​2+ ​and U​(IV)​O​2​) were shown in structure of UO​2 ​reported by ​O’Loughlin et al. (2003)​. For the
̊​
(IV)​ nano-Fe​0 ​at pH 5.0 and 7.0, the FT feature at ​$​1.2 A can be fit by
Fig. 10​A. As shown ​ in ​
F ig. 10​ A, the absorption edge of U​ O​ 2​ (s)
̊​
(17,176 eV) shifted to a lower energy than that of U​(VI)​O​2​2+ ​(17,179 ca. 2 O​ax at ​ 1.79 A , whereas the coordination num- bers of U–O​eq
eV), which was consistent with the results reported by ​O’Loughlin
0 ​ and 7.0, respectively.
et al. (2010)​. The edge positions for the nano-Fe​0 ​at pH 7.0 and 5.0 were 7.51 and 7.63 for nano-Fe​ at pH 5.0 ​
This evidence revealed the contribu- tions of U(IV) and U(VI) (i.e.,
were close to the edge position of U​(IV)​O​2 ​(s), suggesting the 25% and 18% U(VI) with 6 equatorial oxygen atoms, respectively)
(​O’Loughlin et al., 2010​). The predominance of U(IV) species on
predominance of U(IV) in both ​ samples. However, the edge
nano-Fe​0 ​can also be evidenced by the presence of backscattering
position of ​B.​ ​subtilis (​ pH 7.0) were near the edge of U​(VI)​O​2​2+ ​due ̊​
from U neighbours at ​$​3.7 A , which indi- cated the presence of a

to the low weight


​ percentage of U(IV) on ​B.​ ​subtilis ​(<5%), U​@​O​2​@​U interaction and was con- sistent with the presence of
indicating that U(VI) was dominant. The edge position of nano-Fe​0 uraninite (​Latta et al., 2011, 2012​). The presence of the U–U pair
0​
+ ​B.​ ​subtilis (​ pH 7.0) was between the edge posi- tions of the correlation in the EXAFS spectra of nano-Fe​ (pH 5.0 and 7.0) can
nano-Fe​0 ​and ​B.​ ​subtilis,​ which indicated that ​B.​ ​subtilis be attrib- uted to the presence of UO​2(S) ​(​Bargar et al., 2013​), which
significantly inhibited the reduction of U(VI) on nano-Fe​0 ​at pH agreed with the results of TEM-SAED. The smaller ampli- tudes of
7.0. the U–U pair for nano-Fe​0 ​(pH 5.0 and 7.0) may be caused by the
The Fourier transformed (FT, uncorrected phase shift) small and partially disordered clusters,
100 C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107
Fig. 10. U L​III​-edge XANES spectra (A) and Fourier transform (FT) of the EXAFS spectra (B) for the reference samples and U(VI)-reacted samples:
nano-Fe​0 ​at pH 5.0 (a) and 7.0 (b), nano-Fe​0 ​+ B
​ . subtilis (​ c) and ​B. subtilis (​ d) at pH 7.0, for [U(VI)]​0 ​= 450 lmol/L, and ​m​/​V ​= 2 g/L.
of the U(VI) standard, indicating the predomi- nant U(VI) species
̊​
on ​B. subtilis​. The FT feature at ​$​2.2 A did not dip as much as the
U(VI) standard, which corresponded to the contribution of a carbon
atom (​Dunham-Cheatham et al., 2011​). The FT feature for ​B.
̊​ ̊​
subtilis ​at ​$​2.6 A was fitted by the C shell at 2.9A (​Fletcher et al.,
2010​) because of the poor match of the mul- tiple scattering of
̊ ​
O​@​U​@​O paths between 2.5 and 3.0 A (​Bargar et al., 1999​).
Within experimental uncertainty, the EXAFS results for the U–O​eq

bond length (​$​2.45 A ̊ ​) in the


​ ​B. subtilis ​sample were comparable
̊ ​
to the bond length (​$​2.6 A ) (​Kelly et al., 2002​) of the aqueous
uranyl acetate
standard, in which all of the equatorial oxygen atoms result from
the carboxyl groups. The fitted U–O​eq bond
​ lengths were also
̊ ​
within the range of bond lengths (2.41–2.47 A ) reported for
several types of solid U–O​eq​–C compounds (​Allen et al., 1995;
Bargar et al., 2000​). Our best fitted result for the U–C distance
̊​
(​$​2.9 A ) agreed with the bidentateu- ranyl–carbon complex (​Allen
et al., 1995; Bargar et al., 2000​), indicating the formation of
inner-sphere U(VI) with the carbon-containing functional groups,
especially with the carboxyl groups on ​B. subtilis.​ Since the fitting
quality obtained when fits were performed using P was similar to
that obtained with C, it was impossible to distinguish between C
and the presence of other U(VI) species without a U–U pair and and P coordination on the basis of EXAFS alone (​Bargar et al.,
hence diluted signal of uraninite-like species (​Stoliker et al., 2013​). 2013; Stoliker et al., 2013​). Overall, the fitting results suggested
̊​ U(VI) coordination to C/P-containing groups in ​B. subtilis.​ This
The FT feature at ​$​3.2 A for nano-Fe​0 ​(pH 5.0 and 7.0) can be fit
result was consis- tent with the findings of ​Kelly et al. (2002) ​who
̊​
by the U–Fe neighbours at 3.44 A (​O’Loughlin et al., 2010​), which demon- strated that U(VI) adsorption to ​B. subtilis ​depended on pH.
indicated the formation of inner-sphere U(VI) complexes on the At low pH, the inner-sphere uranyl-phosphoryl com- plexes were
oxide shells of the nano-Fe​0 ​particles. The fitted U–Fe distance for dominant. However, adsorption was ascribed to the inner-sphere
̊ ​ complex with two oxygen atoms shared between the uranyl and the
nano-Fe​0 ​was consistent with that (near 3.5A ) of the
carboxyl ligands with increasing pH.​For the nano-Fe​0 ​+ ​B. subtilis
(>Fe–O​2​)UO​2​(H​2​O)​n ​complexes reported by ​Waite et al. (1994)​
​ ,
results suggested a binding environment with
who indicated that a bidentate complex was formed by polyhedral spectrum, the fitting ​
̊ ​
edge-sharing between the hydrated uranyl ion, (UO​2​)(H​2​O)​n2+​ $​2.0 axial atoms at ​$​1.79 A , ​$​6.1 equatorial oxygen atoms at
​ , and
̊ ​ ̊ ​
a single FeO​6 ​surface site. In addi- tion,
​ a similar distance was $​2.36 A , ​$​1.1 carbon/phosphorous atoms at 2.88 A , and
observed by ​Reich et al. (1998)​. The fitting results of EXAFS approximately 1.23 iron atoms at 3.84 A ̊ ​(​Table 3​). As with
support the sorption of U(VI) on the oxide film of nano-Fe​0​, and
nano-Fe​0 ​(pH 5.0 and 7.0), the lower amplitude of the U–U pair for
the following reduction of U(VI) by structural Fe(II).
nano-Fe​0 ​+ ​B. subtilis ​suggested that ​B. subtilis
For ​B. subtilis​, the fitting CNs of the O​ax and
​ O​ eq ​ shells
(​$​2.04 and ​$​6.05, respectively) were consistent with the structure
C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107 101

̊ ̊
Table 3 Best fit values for the EXAFS results of the U(VI) standards and U(VI)-loaded samples. Sample Shell ​CN​a ​R​b ​(A​ ) r​2​c ​(A​ 2​)
U(IV)O​2 (s)
​ U–O 8.05 (3) 2.35 (4) 0.009 U–U 10.89 (4) 3.87 (6) 0.009

U(IV)O​2​2+ ​U–O​ax ​1.74 (8) 1.79 (7) 0.005 U–O​eq ​5.87 (9) 2.25 (5) 0.006 U–U 0.23 (3) 3.85 (3) 0.016

Nano-Fe​0 ​(pH 5.0) U–O​ax 2.02


​ (5) 1.77 (4) 0.004 U–O​eq 7.51
​ (3) 2.30 (3) 0.006 U–Fe 1.50 (9) 3.42 (6) 0.009 U–U 1.70 (5) 3.86 (7) 0.005

Nano-Fe​0 ​(pH 7.0) U–O​ax ​2.04 (5) 1.79 (7) 0.003 U–O​eq ​7.63 (3) 2.30 (1) 0.008 U–Fe 1.84 (7) 3.42 (2) 0.010 U–U 2.26 (5) 3.90 (7) 0.007

Nano-Fe​0 ​+ ​B​. ​subtilis ​(pH 7.0) U–O​ax ​2.01 (2) 1.79 (2) 0.006 U–O​
​ eq 6.12
​ (3) 2.36 (4) 0.040 U–C/P 1.10 (5) 2.88 (6) 0.045 U–Fe 1.23 (8) 3.48 (9) 0.052
U–U 0.05 (5) 3.84 (6) 0.026

B​. ​subtilis (​ pH 7.0) U–O​ax ​2.04 (2) 1.90 (9) 0.025 ​U–O​eq ​6.05 (7) 2.12 (2) 0.009 U–C/P 1.35 (4) 2.90 (7) 0.022

a​
CN,​ coordination numbers of neighbours. b​ ​R​,

the bond distance. c​ ​r​2​, the Debye–Waller factor.


inhibited the reduction of U(VI) by nano-Fe​0​. As discussed above, U(VI)-phosphate complexes formed on ​B. subtilis ​may be not
the functional groups on ​B. subtilis ​blocked the active sites in the favourable for the reduction of U(VI) by nano-Fe​0​. The slow
outer layer of nano-Fe​0​, hence hindering the regeneration of bioreduction of phosphate-precipitated U(VI) was observed by ​Rui
structural Fe(II). In addition, et al. (2013)​. The EXAFS results
102 C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107
Fig. 11. The time evolution of [U(VI)]​aq​/[U(VI)]​0​, [U(VI)]​adsorbed​/[U(VI)]​0​, and [U(VI)]​reduced​/[U(VI)]​0 a​ t pH 7.0, and kinetics model fitting curves
​ for

nano-Fe​0 ​at 1.0 (A), 5.0 (C) and 10.0 (E) mmol/L Na​2​CO​3​; and for nano-Fe​0 ​+ ​B. subtilis ​at 1.0 (B), 5.0 (D) and 10.0 (F) mmol/L Na​2​CO​3​.

Table 4 The sorption (​k1​​ ), desorption (​k​À​1)​ and reduction rate constants (​k​2​) calculated from the kinetics model fitting for nano-Fe​0 ​and nano- Fe​0 ​+ ​B.​
À​1​ À​1​ À​1​ a​
subtilis ​at pH 7.0 and the variable Na​2​CO​3 ​concentration. Sample
​ Na​2​CO​3 (mM)
​ ​k​1 (h​
​ ) ​k​À​1 (h​
​ ) ​k2​ (h​
​ ) ​ SSE Nano-Fe​0 ​1.0 2.650 (3) 0.900 (5) 0.800 (2)
0.055 5.0 0.071 (2) 0.280 (2) 0.212 (2) 0.022 10.0 0.051 (5) 1.498 (3) 0.202 (6) 0.041

Nano-Fe​0 ​+ ​B.​ ​subtilis ​1.0 3.500 (6) 0.400 (7) 0.080 (7) 0.024 5.0 0.950 (3) 0.200 (5) 0.018 (4) 0.051 10.0 0.850 (3) 0.380 (4) 0.012 (5) 0.098

a​
SSE, sum of squares error.
demonstrated that ​B​. ​subtilis ​enhances the sorption of U(VI) due to its variety of functional groups while inhibit- ing the reduction
of U(VI) by nano-Fe​0​.
3.4. Modelling the reduction of U(VI) by nano-Fe​0 ​and nano- Fe​0​+​B. subtilis
According to the kinetics results and the product analy- sis described above, a reaction mechanism was proposed in which the
U(VI) was first adsorbed on the oxide of shell of nano-Fe​0​, and then subsequently reduced by structural Fe(II). The sorption of
U(VI) to the nano-Fe​0​oxide film favoured subsequent reduction by the structural Fe(II) (​Liger et al., 1999; Riba et al.,
2008​).Therefore, a kinetics model was used to simulate the removal of U(VI) on nano-Fe​0 ​according to the method reported by
Yan et al. (2010)​. In addition, it was hypothesised that the removal of U(VI) by nano-Fe​0 ​undergoes a two-step reaction pro- cess,
which was conceptualised by ​Laidler (1996) ​for surface reactions:
​ 2​þ​
ð​i​Þ ​sorption reaction : ​B​SOH ​þ ​Uð​​ VI​ÞO​ 2

Â
ð​VI​Þ​ 2​þ​ ð​5​Þ
k​1 ​k​À​1 ​B​SOH U​ O​ 2 ​
where ​„​SOH designated the species associated with the surfaces of nano-Fe​0 ​and nano-Fe​0 ​+ ​B. subtilis​. The for- ward and
backward (sorption and desorption) rate con- stants are indicated by ​k1​ and
​ ​kÀ​​ 1,​ respectively.
​ 2​þ​
ð​ii​Þ ​reduction reaction : ​B​SOH U​ð​VI​ÞO​ 2

 !​k​2 ​B​SU​ð​IV​Þ​O​2​ð​s​Þ þ ​iron ​ð​hydr​Þ​oxides ​ð​6​Þ

Here, ​k​2 ​is the reduction rate constant.


The surface concentration of ​„​SOH was considered as a constant in the model due to the large specific surface area
C. Ding et al. / Geochimica et Cosmochimica Acta 165 (2015) 86–107 103
Fig. 12. (A) Schematic of the reaction between nano-Fe​0​, U(VI) and ​B. subtilis;​ (B) tetravalent uranium species; (C) bidentate binding of uranyl to
a carboxyl group on ​B. subtilis​; (D) bidentate binding of uranyl to the surface of nano-Fe​0 ​(FeO​6​).
of nano-Fe​0 ​(​Yan et al., 2010​). Then, the time evolution of aqueous U(VI) depletion, U(VI) sorption and U(IV) pro- duction in the
system can be described as following by Eqs. (​7–9​): d ​[ ​Uð​​ VI​Þ​O​2​þ​2 ​dt ​]
1⁄4 À​k​
1 ​[ ​Uð​​ VI​Þ​O​2​þ​2

] ​þ ​kÀ​ ​1 ​[ ​B​SOH U​ð​VI​Þ​O​2​þ​2


]
ð​7​Þ d​ ​[ ​B​SOH U​ð​VI​Þ​O​2​þ​2 ​dt ​]
1⁄4 ​k​
1 ​[ ​Uð​​ VI​Þ​O​2​þ​2

] ​Àð​k​À​1 ​þ ​k​2​Þ [
​ ​B​SOH U​ð​VI​Þ​O​2​þ​2
]
​ ​1⁄2 ​U​ð​IV​Þ ​dt ​
ð​8​Þ d
1⁄4 ​k​
2 ​[ ​B​SOH U​ð​VI​Þ​O​2​þ​2

] ​ð​9​Þ
The kinetics experimental data for nano-Fe​0 ​and nano-Fe​0 ​+ ​B. subtilis ​at pH 7.0 were simulated by these kinetics equations using

the MATLAB R 2009a software. The experimental data were simulated by optimizing ​k​1​, ​kÀ​​ 1 ​and ​k2​ ​values constrained from Eqs.

()7–9​. The fitting results


​ were shown in ​Fig. 11 ​and the values of ​k1​​ , ​kÀ​​ 1 and
​ ​k​2 obtained
​ from the curve fitting results were shown

in ​Table 4​. As summarised nano-Fe​0 ​(2.65) and in ​Table ​nano-Fe​0 ​+ ​B. 4​ ​, the ​k1​ ​values for ​subtilis (​ 3.50) were much nano-Felarger
0​
+ ​B. t​ han ​subtilis ​the (0.40) ​kÀ​​ 1 values
​ for nano-Fe​0 ​(0.90) and at 1.0 mmol/L suggested that the removal of U(VI) on

Nanano-Fe​2​CO​3​, 0​ ​which and


​ nano-Fe​0 ​+ ​B. subtilis ​was favourable for the sorption pro- cess. Furthermore, nano-Fe​0 ​+ ​B. ​the ​k​1

values of nano-Fe​0 ​(2.65) and subtilis


​ (​ 3.50) were larger than the values of ​k​2 indicating
​ nano-Fe​0 ​(0.80) and nano-Fe​0 ​+ ​B. subtilis
(0.08), that the reduction of U(VI) on nano-Fe​0 ​and nano-Fe​0 ​+ ​B. subtilis w​ as the rate-controlling step for U(VI) (3.50) removal.
The ​k​1 value
​ was larger than that of of nano-Fenano-Fe​0 0 ​+ ​B. subtilis (​ 2.65), whereas the ​k2​ value
​ of nano-Fe​0 ​+ ​B. subtilis (​ 0.08)
was smaller
than that of nano-Fe​0 ​(0.80), which suggested that B
​ . sub- tilis transport from Fe(0) to the Fe(II)/Fe(III) oxide shell. The combined
enhanced U(VI) sorption but inhibited the reduction of U(VI) by macroscopic, spectroscopic and model fitting data revealed that the
nano-Fe​0​. As the carbonate concentration increased, the ​k1​ and
​ ​k2​ reduction of U(VI) by nano-Fe​0 ​was triggered by the sorption of
values decreased for the nano-Fe​0 ​and nano-Fe​0 ​+ ​B. subtilis a​ nd the U(VI) on the oxide shell of nano-Fe​0​. For nano-Fe​0 ​+ ​B. subtilis​, the
k​À​1value increased. The results indicated that carbonate inhibited rate-determining step was predominant for U(VI) removal at

the sorption and reduction of U(VI) but increased the desorption of 1.0–10.0mmol/L
U(VI) from nano-Fe​0 ​and nano-Fe​0 ​+ ​B. subtilis​. This result was Na​2​CO​3​. However, the rate-determining step shifts from a reduction
potentially ascribed to the formation of U(VI)-carbonate species, as reaction (at 1.0 mmol/L Na​2​CO​3​) to adsorption reaction (at 5.0 and
indicated by ​Fig. 3​. The nega- tively charged U(VI)-carbonate
10.0 mmol/L Na​2​CO​3​) for nano-Fe​0​. Therefore,
​ the removal of
species decreased the U(VI) sorption on the oxide film of nano-Fe​0 0 ​
U(VI) on nano-Fe​ was greatly influenced by ​B. subtilis ​over
due to elec- trostatic repulsion, which in turn inhibited U(VI)
0
short-term periods. The find- ings in this study may be generally
reduction. The rate-limiting step of U(VI) removal on nano-Fe​
applied to other bacteria and these EPS with massive carboxyl and
shifted from reduction to sorption as the carbonate concen- tration
phosphoryl groups. Accordingly, the reduction of U(VI) on
increases. However, this transformation was not observed for the
nano-Fe​0 ​was retarded due to the coordination of these organisms
nano-Fe​0 ​+ ​B. subtilis​. For example, at 10.0 mmol/L carbonate, the
0​
with oxide film of nano-Fe​0​. The interaction mechanism obtained
k​1​, ​k​À​1 and
​ ​
k ​
2​ values of the nano-Fe​ were 0.051, 1.498 and 0.202,
by spectroscopic techniques at molecular-scale can provide
respectively, while the ​k​1​, ​k​À​1 and 0 ​ significant information to estimate the fate and transportation of
​ ​k2​ values
​ of the nano-Fe​ + ​B.
U(VI) in aqueous environments in ternary system such as
subtilis ​were ​0.850, 0.380 and 0.012, respectively. The reduction water-Gram-positive bacteria – nano-Fe​0 ​interface. Further
reaction was the rate-determining step for nano-Fe​0 ​+ ​B. subtilis investigations regarding the roles of roles of other microorganisms,
over a range of carbonate concentrations (1.0– 10.0 mmol/L), especially metal reducing bacteria, biofouling by EPS and
which further indicated the inhibition effect of ​B. subtilis f​ or U(VI) environmentally relevant organic matters on the reduction of U(VI)
reduction by nano-Fe​0​. by nano-Fe​0 ​should be taken into account to evaluate the fate and
The schematics of the reaction mechanisms from the transportation of U(VI) in more complex environments.
combined macroscopic experimental, spectroscopic and model
fitting data were depicted in ​Fig. 12​. It was assumed that U(VI) was ACKNOWLEDGMENTS
0 ​
preferentially adsorbed to the nano-Fe​ oxide shell before the
adsorbed U(VI) was directly reduced by the structural Fe(II) to Financial support from National Natural Science Foundation of
China (21207135, 91126020; 21225730; 91326202; 41273134), 973 project
produce Fe(III). Subsequently, the Fe(III) was reduced by an
from Ministry of Science and Technology of China (2011CB933700),
electron from the Fe​0 ​core. The structural Fe(II) on the oxide shell
Anhui Provincial Natural Science Foundation (1408085MB28), the Jiangsu
of the nano-Fe​0 ​serves as an effective electron shuttle from the core Provincial Key Laboratory of Radiation Medicine and Protection, the
of Fe(0) to the adsorbed U(VI). The presence of ​B. subtilis ​was Priority Academic Program Development of Jiangsu Higher Education
coordinated with the structural Fe(II) and Fe(III), which decreased Institutions, Hefei Center for Physical Science and Technology
the reductive capacity of the nano-Fe​0​. Therefore, U(VI) was (2012FXZY005) and MCTL Visiting Fellowship Program from Key
predominantly present as monomeric U(IV) and/or as bidentate Laboratory of Marine Chemistry Theory and Technology (Ocean University
of China), Ministry of Education are acknowledged.
U(VI)-Fe surface complexes on nano-Fe​0​, whereas bidentate
U(VI)-C/P and U(VI)-Fe sur- face complexes were the major
species in the presence of ​B. subtilis​.
APPENDIX A. SUPPLEMENTARY DATA

4. CONCLUSIONS
Supplementary data associated with this article can be
found, in the online version, at ​http://dx.doi.org/10.1016/
In conclusion, the effect of ​B. subtilis ​on the removal of j.gca.2015.05.036​.
U(VI) by nano-Fe​0 ​was investigated in batch techniques. Overall, ​B.
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