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doi: 10.1093/mmy/myy037
Review Article
Review Article
Coccidioidomycosis in Latin America
Rafael Laniado-Laborı́n1,∗ , Eduardo G. Arathoon2 , Cristina Canteros3 ,
Abstract
Coccidioidomycosis is a highly prevalent systemic mycosis in Latin America and has been reported (human
and zoonotic cases) in México, Guatemala, Honduras, Colombia, Venezuela, Brazil, Paraguay, Bolivia, and
Argentina. The incidence of coccidioidomycosis in Latin America is unknown due to lack of clinical awareness
and limited access to laboratory diagnosis. Coccidioidomycosis is as prevalent in Mexico as in the endemic
regions of the United States. The number of cases reported in Brazil and Argentina has progressively
increased during the last decade, including areas that were not considered as endemic. Genetic studies
have shown that the prevalent species in Latin America is Coccidioides posadasii. Coccidioides immitis
has been reported sporadically in indigenous cases from Mexico and Colombia. Coccidioidomycosis and
tuberculosis share some risk factors such as immunosuppression and residing in areas endemic for these
conditions, so their coexistence in the same patient is not uncommon in Latin America. In most regions,
clinical diagnosis of coccidioidomycosis is based on direct sputum examination and histopathology results
from biopsies or autopsies. This would explain why primary coccidioidomycosis is rarely diagnosed, and
most cases published are about chronic pulmonary or disseminated disease.
Key words: coccidioidomycosis, Latin America, epidemiology, tuberculosis.
S46
C The Author(s) 2019. Published by Oxford University Press on behalf of The International Society for Human and Animal
1974, Madrid publishes the book Coccidioidomycosis, the only prevalence of diabetes in the country, according to the latest na-
monograph on CM published to date in Mexico.4 tional survey is 9.4%;14 severe forms of CM have been reported
Infection by Coccidioides sp. is as prevalent in Mexico as in in diabetics in Mexico for more than 30 years.15 Tuberculosis
the endemic regions of the United States.5 The first skin sur- and CM share the same risks factors and its coexistence is also
veys with coccidioidin were carried out in Sonora from the late a common clinical finding in Mexico.16 The coexistence of CM
1940s to the early 1970s, at different sites in the state. Rates of and human immunodeficiency virus (HIV) has also been re-
infection were high all over the state and ranged from 64% to ported in Mexico,17 although not with the frequency that should
90% in adults; in children, the rate was reported at 16%.5 In be expected based on the prevalence of HIV in the country.
1966 González-Ochoa reported the first national survey on coc- Travelers from nonendemic areas should be aware of the po-
cidioidomycosis infection; rates were significantly higher in the tential risk of infection when visiting endemic areas in Mexico.
Year of
Year of samples
publication Molecular marker Samples Number/Type collection Geographic origin samples Specie identification Citation
Human
2004 Ag2/PRA 120 clinical strains 1991–2002 Nuevo León C. posadasii (100%) [21]
2 Microsatellites 3 FFPE
2007 SNPs (proline 157, proline 46 clinical isolates No data Baja California, CDMX, Coahuila, Coccidioides spp. [11]
174, hexokinase 149 and Nuevo León
glucose-synthase 192
2012 Ag2/PRA 54 FFPE tissue 1982–2010 Baja California C. posadasii (83%) [26]
U region C. immitis (17%)
2013 Ag2/PRA 32 clinical isolates No data Baja California, Campeche, CDMX, C. posadasii (100%) [25]
AFLP Durango, Nuevo León, Torreón.
2014 Ag2/PRA 154 clinical isolates 1957–2010 Baja California, Chihuahua, Coahuila, CDMX, C. posadasii (82%) [24]
8 Microsatellites Durango, Edo. De México, Guerrero, C. immitis (18%)
U region Michoacán, Nuevo León, San Luis Potosı́,
Sinaloa, Sonora, Tamaulipas, Zacatecas.
2015 U region 3 clinical isolates 2015–2010 Baja California C. posadasii (100%) [31]
2016 U region 1 clinical isolate 2016 Baja California C. posadasii [33]
2017 Ag2/PRA 1 clinical isolate 2017 Mexico City C. posadasii [22]
RAPD
Environmental isolates
2012 ITS2 (nested PCR) 32 soil samples 2006–2010 Baja California Valle de las Palmas Zorra (SJZ) Coccidioides spp. [37]
2013 ITS2 (nested PCR) 5 soil samples 2009 Baja California (Valle de las Palmas) Coccidioides spp. [36]
2015 IT2 (nested PCR) 11 soil samples 2012–2013 Baja California (Valle de las Palmas) C. posadasii (82%) [38]
9 Top soil C. immits (18%)
2 Burrows
2014 Ag2/PRA 4 isolated culture No data Coahuila C. posadasii (100%) [24]
8 Microsatellites from soil samples
U región
2014 ITS2 (nested PCR) 10 soil 2011 Baja California (Valle de las Palmas) Coccidioides spp. [39]
Animal samples
2014 Ag2/PRA 1 isolated culture from 1957 Sinaloa C. posadasii [24]
8 Microsatellites dog
U región
2016 U region 3 FFPE tissue from dogs 2010–2015 Monterrey C. immitis [40]
2017 Ag2/PRA 1 FFPE tissue from cattle 2014 Baja California C. immitis Muñiz-Salazar
(2017)
unpublished
FFPE, formalin-fixed paraffin-embedded; PCR, polymerase chain reaction; SNP, single-nucleotide polymorphism.
Medical Mycology, 2019, Vol. 57, No. S1
hexokinase 149 gave negative results in 34 samples. Clinical isolates were associated with cutaneous dissemination, suggest-
isolates were from sputum, cerebrospinal fluid, bronchoalveolar ing this species exhibits a higher tendency to disseminate to the
lavage, pus or tissues, and the tip of a ventriculoperitoneal shunt skin, while C. posadasii was related to all forms of clinical pre-
catheter and patients clinically diagnosed with coccidioidomyco- sentation. It is important to highlight that this is the only study
sis in Baja California, Coahuila, Nuevo León, and Mexico City. on the genetic structure of Coccidioides in Mexico.
González-Becuar in 2012,26 analyzed a total of 129 formalin- Recently, clinical cases have used molecular markers to
fixed tissue samples with histopathology diagnosis of CM. The identify species of Coccidioides. In 2015, Moreno-Coutiño31
samples were obtained from the collection of the pathology lab- reported six Mexican male cases, residents of Tijuana Baja
oratory from the Tijuana General Hospital from 1982 through California—three of them with primary pulmonary infection and
2010. In total, 54 (83%) samples identified as C. posadasii, and further cutaneous dissemination, and three cases of primary cu-
to determine the diversity of the mycobiota in Baja California. Only a few studies of CM in cattle have been reported in Mex-
Although this assay was able to identify species like Penicillium ico. Six cases of CM in beef (3) and dairy (3) cattle slaughtered
dipodomyicola, Coprinellus radians, Alternaria spp., among oth- and inspected in 1995 and 1996 were reported in Mexicali, Baja
ers, it was not able to identify Coccidiodes. Thus, a nested PCR California. The identification was performed just by histopatho-
was used to determine this species.37 The most recent work ana- logical analysis. After that, there are no reports in this area until
lyzes the ITS region by a metagenomic approach in a 454 Roche 2017, when a post-mortem examination in 1 out of 319 cattle
pyrosequencer.38 The objective was to identify environmental slaughtered at Mexicali, using histopathological and molecular
factors determining fungal community structure in two differ- (Ag2/PRA) testing identified C. immitis (Muñiz-Salazar unpub-
ent microhabitats, burrows (influenced by rodent activity), and lished data).
topsoil and were compared in winter and summer. Differences
test, but their results must be interpreted judiciously since mis- Coccidioidomycosis in Central America
interpretation can lead to false positive or negative diagnosis; a Coccidioidomycosis is an endemic fungal infection found in cer-
positive serology test by itself does not make the CM diagnosis tain arid and semi-arid regions of Central America.51 Reports
and a negative one does not rule out the disease, mainly in the of its presence in the region are scarce, and documented reports
most seriously ill patients.47 Skin testing, when available, can of autochthonous human CM are found in only two countries,
also be used to detect either infection, but they are not useful Guatemala and Honduras.
for the diagnosis of the disease.44,47 Interferon-gamma release Two early attempts to investigate the presence of disease in
assays (IGRAs) for the detection of TB infection, are basically Central America using coccidioidin skin test surveys exist. The
interpreted in a similar way than the tuberculin test but with a first one by Andrade in 1945,52 included 1200 persons, children,
higher sensitivity and specificity.44 However, as mentioned, skin and adults in Guatemala City. A second study in 1950 included
was a 19-year-old military recruit, stationed in Teculután (Mo- and 60 C. posadasii). Of the C. posadasii isolates, three ma-
tagua Valley) with primary coccidioidomycosis that progressed jor clades were clearly separated and well supported by the
to chronic pulmonary disease. Patient number four was a 64- bootstrap analysis: one clade included all isolates from Arizona;
year-old male carpenter from Quetzaltenango, outside the en- another included four Guatemala isolates and the third clade,
demic zone, who traveled to the endemic zone, and had dissem- contained nearly all other non-Arizona isolates. There was a
inated disease. Patient number five was a 20-month old male fifth Guatemalan isolate included in the non-Arizona clade. This
with disseminated disease, living in Rı́o Hondo in the endemic isolate was included in the Texas-Mexico-South America clade
zone. Finally, patient number six was a 24-year-old Mayan male and came from an HIV-infected migrant worker, who aban-
from Chicojom, Baja Verapaz (near to an endemic area) with doned his antiretroviral treatment and probably was infected
disseminated disease. while crossing the border in Texas. He died from disseminated
In 1967, Ruben Mayorga, based on the previous reports, coccidioidomycosis, shortly after he returned to Guatemala. This
decided to perform a skin test survey of the Motagua Valley61–63 initial work demonstrates that C. posadasii is found in Central
and other areas in search of reactive responders. He included America and is part of a different clade. Phylogenetically it is the
7725 school children; 9734 subjects were from Guatemala and youngest clade, probably originated from the Arizona clade.
991 from Nicaragua. He classified his results in five study areas, There are approximately six new cases of coccidioidomycosis
designated from A to E; the first four areas were located in documented yearly in Guatemala, mostly in HIV-infected in-
Guatemala and the last area, E, was located in Nicaragua. Area dividuals. In Honduras there are only sporadic cases reported.
A, with the highest concentration of reactive results (42.4%), Based in the number of persons reactive to coccidioidin found in
corresponded to the endemic area of the Motagua river. Areas B the endemic areas, these numbers should be higher, but due to
to D were in the surrounding areas, outside the Motagua Valley, the lack of awareness and mycological skills in the region, a sig-
with less than 4% reactivity. nificant number of persons with CM probably are not diagnosed.
Table 2. Epidemiological studies in Coccidioidomycosis performed Only a small number of CM cases had been reported in
in South America. Argentina before the year 2000, despite the large extent of the
endemic area. In 2009 the first retrospective review of all CM
Country Period Cases reported (n) Infection rate∗ (%)
cases reported in the country documented 128 cases from the
Colombia 1958–2015 5 3–13 original case reported by Posadas in 1892 to the year 2009.
Venezuela 1948–2014 114 11–46
From 1892 through 1939 only six cases were registered; between
Brazil 1978–2015 829 26
1940 and 1999, 59 more cases were reported, and finally, the
Paraguay 1950–1967 3 15–44
Bolivia 1948 1 ...
remaining 63 cases (49% of total cases) were reported from
Argentina 1892–2015 2–40 2000 to 2009, with the Catamarca province having the highest
number of cases.68 The National Mycology Network reported
∗
Infection rate in each country varies according to the geographical area of the
14
1111: 326–335.
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