Professional Documents
Culture Documents
Lecture 1 (3.29)
1.3) Pharmacology Review: Different levels of investigation
Pharmacokinetics (PK): how molecule travels within the body
o Absorption, distribution, metabolism, excretion
Pharmacodynamics (PD): how molecule interacts with other molecules
o Receptor binding, signaling mechanism, agonist& antagonist, dose-response
curve, physiological effect
1.4) Bioactivity
Psychoactive drugs: molecule that modifies mood, thought process, behavior
Ligands: endogenous, synthetic, plant-derived
Receptors: post/pre, glial/immune cells
Additional targets: hydrolyzing enzymes (ex. AchH), transporter
Lecture 2 (3/31)
2.1) Membrane receptors: Drugs interacting with Receptors
Aim: find a compound that fits tightly to the binding pocket of a receptor target (key-
lock notion)
Lecture 3 (4/2)
3.1) Pharmacokinetics: Overview
3.2) Different routes of administration
PK: Time course of onset and duration of the drug’s action both of which depend on
bioavailability
Concept: total amount of drug injected in body will determine the intensity and duration
of both the therapeutic effect and side effects -> therapeutic index
3.3)
Flux through membranes
o Hydrophilic molecule : channels and transporters
o Hydrophobic drugs: cross cell membrane depends on gradient
3.4) Liver
First organ to encounter when taken orally; when injected, can bypass lvier and go
directly to the brain
Hepatic biodegradation: Enzyme metabolize (oxidize) molecules (cytochrome P450 is
the major family)
Decrease compound’s pharmacological activity by altering the chemical structure of the
drug (e/g/ add chemical moiety) -> doesn’t bind to receptor anymore
Transporters: filtering metabolites by transport: drug carried by these mechanisms
P450: oxidizing enzyme to process drugs
3.5) BBB
Astrocyte & pericyte & neurons control the BBB
Special organ and expresses special type transporters (ex. GLUT1);
3.6) Drug excretion: half-life
Elimination of the drugs through kidneys (major route of excretion of drug metabolites),
lungs (only volatile) and skin
Drug half-life: time required to reach 50%
drug free: subject has eliminated 98% of the drug (6 half lives)
Concept: the time required to be drug free depends on drugs
3.7) Regiment treatment
Treat before half-life of drug to reach steady state levels
Concept: avoid overshooting and inducing side effects
Clamp at therapeutic dose
3.8) therapeutic index: the art of heling without harming
Wide vs narrow therapeutic index
o Wide ex. Ibuprofen; narrow ex. Chemotherapy
3.9) why does drug response vary?
CYP polymorphism in p450 enzyme
o PM, IM, EM, UM
3.10) Pharmacogenetics
Goal: find targets/enzymes that have amino acid sequence differences that change drug
activity and adapt treatment regimen
Polymorphism: genetic differences between individuals. True for receptors and enzyme
that metabolize drugs
P450: a change in one critical amino acid at active site can affect enzymatic activity and
metabolism. Although very small amounts of genetic differences occur, thy are
important when considering large populations
Oncogenes: not exactly the same AA seq between WT and oncogene -> use drug that
targets mutant pop
3.11) Novel medical approaches
Personalized medicine: a medical model that proposes the customization of
healthcare
Pharmacoeconomics: evaluates whether the incremental cost of a drug is justified by
the incremental gains in quality of life and life expectancy, compared to the current
standard of care
Quiz 1:
#1)
Full agonist: active site; Vmax does not change
Competitive neutral antagonist: active site; Vmax does not change and has no biological effect
inverse agonist: active site (stabilizes the inactive form); Vmax decreases below "0"
non-competitive antagonist: other sites other than active site (changes the conformation so it
decreases the chance of a substrate binding to the active site ); Vmax decreases
#2)
P450s are a family of oxidizing proteins that are mainly involved in drug metabolism in liver. The
P450 impairment will cause greater side effects because the patient will not be able to degrade
the drug properly. In order to address this and avoid overshooting, I would deliver the drug in
lower doses but for a longer period.
Enzyme that metabolizes drugs/toxins in the liver. Low P450 activity will reduce
metabolism and increase drug bioavailability which can lead to greater side effects
since the drug is circulating in the body for longer. Reduce dosage, deliver orally.
Lecture 4 (4/5)
1.1) Difference btwn THC and CBD: accepted by scientific community
THC and CBD diff by closure of Aromatic ring but v similar overall
Difference: THC >0.3%, THC <0.3%
THC:
o psychoactive-enhances sensory awareness
o medical: analgesic/apetite
o side effect: impact brain development, high not always wanted
CBD:
o No high tames THC properties
o Medical: anti-epileptic, anti inflammatory
o Side effects: different than CBD?
1.2) Cannabis Plant and Cannabinoids: Poly-pharmacology
1.3) Biological effects: Molecular to Human Physiology
THC : CB1/CB2; CBD: GPR55
Long term THC take reduces immune response
Endogenous cannabinoids = same fxn?
o Can study endogenous pathway using exogenous drugs
1.4) Behavioral effects: Responses to mailed questionaries
Poly model responses
Most common reported effects:
o Sensory effects: visual, auditory and touch
o Perception: space and time
o Interpersonal relationship: shy/talkative/paranoia
o Thought process: attention, focus & short-term memory
o Upper/downer/sleepy
Positive self: enjoyment, altered perception, experimentation and sleep; other:
celebration
Negative self: coping, boredom, social anxiety, sleep; other: conformity
1.5) Biological effects: Acute effects
Classified as mind altering drug bc it doesn’t fir in classic simulant/depressant category
o Increases sensitivity to external stimuli, Anxiety, Time distortion, Attention
deficit/paranoia
Concept: could cannabinoid agonist/antagonist be used to treat anxiety, attention
deficit, paranoia?
1.6) Biological effects: Long-term use (7 “hits” a day)
Addiction
o Human: significant; more of a psychological addiction (thinking about the drug);
cannabis use disorder
o Rats/monkey: self administer CP55940, rarely with THC
o Withdrawal: anxiety & insomnia
o Tolerance: humans/animals more sensitive during initial use
o Cross-interactions: EtOH
o Major long term conseq.:
Young adults: psychosis, can exacerbate/precipitate the psychosis
Short term memory impairment
1.7) ID of cannabinoids binding site: overview
Major psychoactive ingredient = ∆9THC = hydrophobic
Controversy: are these biological/behavioral effects produced through membrane
(lipophilic) or protein/receptor
o Synthesized a new selective and high affinity cannabinoid ligand: compound
Pfizer
1.8) Cannabinoid compounds: chemical structure
1.9) Binding theory: Overview
Law of mass action: D + R <- - > DR* <- - > biological effect
1. Need a selective and high affinity radioactive ligand
2. Need high affinity because number of R in prep is low
3. 3H radiolabeled: best bc no change biological characteristic (no I bc bulky)
4. Drug produces behavioral effects -> thus incubation with brain homogenate
5. This is membrane bound receptors -> centrifuge to recuperate P2 fraction = membrane
with receptors
Concept: increase specific binding by eliminating non-specific binding
1.10) -11 Binding theory: experiment
Add radioactive ligand -> add radioactive +non-radioactive ligand -> check how much
radioactive ligand goes
1.12) Binding theory:
Filter: eliminate the unbound radioligand and keeps radioligand bound to R and
membranes
Total binding = specific + non-specific
Add excess cold ligna (non radioactive): non-specific only 1 chance per 10.000 to bind R
Total minus nonspecific = specific
None specific= lignad binds to the intert bidnign sites ex. plasma membranes
(accumulation of hydrophobic molecule) or ionic attractant (glass/plastic)
Increasing cold ligand does NOT displace the non-specific binding of radioactive ligand ->
infinte amounts of binding sites
1.13) Binding theory: results
1.15) Cannabinoid binding site: ;landmark paper!
Saturation of specific binding = 1st criteria
Adding increasing amount of radioactive ligand reaches a max binding site = Bmax
Finite number of R and all are bound; if increase amount of homogenate -> increase the
number of R -> increase the Bmax
Slope of curve = affinity = rate at which saturation is reached
1.16) Cannabinoid binding site: time course of association
Incubate enough time for the ligand to bind receptors (~30-40 min)
Equil. Reached when: rate of receptor-ligand binding = rate of receptor-ligand
dissociation
Filter at increase time
o total and non-specific -> calculate specific immediate equilibrium (equal weak
on/off rate)
o predominant on rate progressively saturates
o time dependent equilibrium -> shake to increase probability of interacting with
the receptor
1.17) Cannabinoid binding site: dissociation/displacement
dissociation/displacement = 2nd criteria
as the radioligand dissociates, the large excess of cold ligand is more likely to bind to the
R
compare rate of association and dissociation -> gives an indication of affinity
o ex. Rapid binding with slow dissociation = high affinity
saturate with radioactive ligand (90min), add excess cold, filter at increase time; total
and non-specific -> calculate specific
1.18) cannabinoid binding site: competition
competition experiments: 3rd criteria
shows competition of bound radioligands with analogues; measure ki= concentration
that leads to 50% of competition of radioligand
asymmetric carbon (enantiomer): (-) isomer is prevalent configuration for naturally
occurring agonists. (-) and (+) bind differently to R. ionic attractant similar absorb/bind
(membrane area)
o – usually binds with higher affinity
Concept: structure activity relationship studies demonstrate a correlation between
receptor binding and in vitro activities
Lecture 5 (4/7)
2.1) Cannabinoid binding site: autoradiobiography
2.2) Cannabinoid receptor: cloning
2.3) Cannbainoid binding site: competition
2.5)
Symmetric structure -> GABAergic
2.7) Crystallography and protein structures: CB1R
Easier to stabilize in inactive form
2.8) Cannabinoid receptors: presynaptic channel regulation
Neuronal cell express Cb1R endogenously
2.9) Cannabinoid receptors: signal transduction
-> CBD prevents the inhibition of cAMP accumulation by binding to Cb1 receptor
2.10) Receptor biased signaling: Molecular mechanism
2.11) Receptor signaling: biased signaling dose responses
Lecture 6 (4/9)
3.1) Endocannabinoids: Identification
AEA is in brain -> bind to receptor -> activate or inhibits signal coupled to receptor ->
produced in an activity-dependent manner by neurons -> inactivated THEN physiological
role
3.2) Endocannabinoid: Quantification by GC/MS and LC/MS
Lipid extraction from brain (homogenize, add methanol & chloroform)
3.8) Cb1R heterosynaptic regualtion: both inhibitory and excitatory neurons express CB1R
Additional difference between Cb1R on Glut and GABA: coupling
QUIZ 2:
#1)
Ligand & tissues for specific binding: For the ligand, I would exogenous ligands such as THC or
CP that binds to the CB1 receptor. For tissues, I would need brain tissue (specifically the parts of
high glial cellular area and expression GABAergic neurons).
3 tested criteria: association time course (time to reach equilibrium), dissociation/displacement
time, and competition with analogues.
Importance of homogenizing tissue and using centrifuge: it’s important to homogenize the
tissue and use centrifuge the samples in order to first separate away the organelle pellet from
the cytosol and membranes components and to further separate away the cytosol supernatant
and keep the membrane components (main area of interest for receptors and membrane).
Affinity and Bmax values change after partial KO of CB1-R: after the partial KO of CB1-R, the the
affinity would remain relativelt the same while the Vmax would decrease as there’s less
receptors available.
Time course and association change in colder temp: time course and association change would
both be prolonged in colder temperature as molecules move have lower kinetic energy in lower
temp.
Radioactive cool, non-radioactive cool, a known CB1R ligand (e.g., CP or THC), and
brain tissue.Saturation, Dissociation, Competition.Centrifuge to concentrate
receptors, eliminate non-specific binding.No change in affinity, lower Bmax. Slower
association at colder temp.
#2)
CB1 & CB2 diff: CB1 and CB2 are pretty homologous, but CB1 has longer AA seq and are
expressed more widely through the brain and the body (CB2 is more selectively expressed in
the immune system). THC can bind to both CB1 and CB2 while CBN can only bind to CB2.
Experiment design: use antobody probes that bind to CB1-R and validate the results using
techniques such as immunohistology, electron microscopy, and/or high-resolution microscopy.
Then, I would check to see that these CB1R expressed in presynaptic terminal by using voltage
clamps and exogenous ligand and measure how the presence of ligand affects the post synaptic
neuron.
Similar structure, small diff in NT and CT, and in 3rd intracellular loop.CB1 neuronal,
CB2 immune, CB1 - THC, CB2 - THC, CBN
Perform immunohistology (antibody staining for CB1R, fluo microscopy for brain and
EM or high-resolution microscopy for presyn). Not autoradiography!CB 1R-KO brain
tissue
Lecture 7 (4/12)
Lecture 8 (4/14)
5.8) Regimented administration: PK of smoking
5.9) Regimented administration: Delivery and select responses
Burn plant, vape oil, dab resin; capsules, eatables, drinks
Concerns: Higher potency products, quicker onset devices, cannabis use disorder,
vulnerable populations, toxicity of add-ons
Lecture 9 (4/16)
Brain/spinal cord areas that underlie pain differ from those that underlie
reward/aversion
Challenge of opioids is disconnecting the pain relieving properties from the effects on
mood
Biased Signaling
G protein and arrestin response -> ligand can prefer one over the other
Ex. Nalfurafine: kappa receptor
o G-> analgesia; no arrestin so no dysphoria
Overdose
Characteristics of opiates and the MOR
o Euphoria: PK – route of administration
o Tolerance: PK – withdrawal
o Side effects: respiratory depression
Euphoria: PK
Higher drug conc = more GABA inhibition = increased dopamine release = greater high
What goes up must come down
o Upregulation of cAMP