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BMS 1: PRACTICALS
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EXPERIMENT 1
ACID-BASE TITRATION
Carbonate and hydroxide are bases, which can be determined volumetrically with a
single standard acid like HCL. A complete quantification of these two bases can be
achieved by using two indicators in the same titration.
Use of indicators
Several methods can be used to establish the end point of an acid – base titration.
Use of indicators is one of the methods. An indicator is usually a weak acid which
dissociates in solution.
AH A - + H+
(indicator (indicator
colour 1) colour 2)
It exhibits one colour in the free, unionized form (colour1) and another colour in the
ionized form (colour 2). Therefore the colour of any given indicator depends on its
degree of ionization which in turn is dependant on the pH of the solution. This is the
basis on which indicators are utilized to estimate end-points during an acid-base
titration.
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1. Neutralization of Na2CO3 by HCl:
The neutralization of NaOH by HCl occurs in one stage only (Fig 2):
1) NaOH + HCl NaCl + H2O
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(i) complete neutralization of NaOH
METHOD
Make 100 ml of 0.1 M HCl from stock. Place 25 ml aliquot of unknown alkali
solution (containing NaOH and Na2CO3) into a conical flask.
Titration
Phase 2: Add 2 drops methyl orange indicator to the above solution and
continue titration to the new end point. Note volume (V 2).
Above procedure to be done in triplicate.
DATA ANALYSIS:
(1)
PROCEDURE TITRE
V1 (ml) V2 (ml)
st
1 Procedure
2nd Procedure
3rd Procedure
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(2) In Phase 1: Only NaOH is completely neutralized. Na 2CO3 is
partially neutralized so that only NaHCO3 remains in
solution.
QUESTIONS
b) i) Define pH
ii) If the hydrogen ion concentration in a blood corpuscle is
6.5 x 10 –5 M, what is the pH? Show your calculations.
c) i) What is a buffer?
ii) Briefly explain the mechanism of buffer action of the
H2CO3 / HCO3- buffer system.
References
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EXPERIMENT 2
A beam of Light passing through a substance can be absorbed if the energy of the
photons happen to coincide with a particular energy transition available in the
absorbing substance. So if light of many wavelengths is passed through a
substance, the adsorption of that light will rise to a peak value and then fall again as
the wavelength coinciding with as energy transition is reached and passed. For
some substance several such peaks may be found and may superimpose to form a
broad peak. If the amount of absorption is measured and plotted against wavelength
the resulting curve is called an absorption spectrum and is characteristic of the
absorbing substance. The absorption at a wavelength where absorption is greatest
is termed the peak extinction or extinction maximum (or absorption peak or
maximum).
If absorption is measured at a fixed wavelength, the value obtained will depend on:
(1) the thickness of the absorbing matter through which the light passes, (2) the
concentration of absorbing matter present, and (3) the efficiency with which the
matter can absorb light.
A spectrophotometer measures the intensity of monochromatic light, which has
passed through a sample with the objective of determining how much light was
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absorbed by the sample. In the ultraviolet and visible regions of the spectrum,
measurements are made on solutions contained in a suitable vessel (the cell,
cuvette or Spectronic tube). Since the sample is a solution in a tube, a reference
measurement must be made to compensate for absorption by solvent and tube.
Alternatively, the instrument may be zeroed using tube containing solvent.
Absorption of light at a given wavelength is related to the concentration of the
absorption species through 2 laws.
Mathematically:-
In Io = αx
I
Log Io = αx
I 2.303
Light is absorbed only when a photon collides with a molecule. Thus the amount of
absorbed, or the probability of absorption is proportional to the number of molecules
in the light beam. This is thus dependent on the concentration of the solution and the
length of the light path.
Log Io = abc
I
Where a is the absorptivity or specific absorption coefficient of the species
(analogous to α), b is the path length and c is the concentration. When the units are
moles per litre, a is called the molar absorptivity or the molar absorption coefficient
and is denoted, عor E
This absorbance is a linear function for any given wavelength if Beer’s Law is
obeyed.
REAGENTS
Experimental Procedure
3. Dilute the 0.2 M cobalt chloride solution provided with an exactly equal
volume of 0.12 M HCl to give a 0.1 M concentration. Obtain the absorption
spectrum and maximum of CoCl2 using 0.12 M HCI as your blank.
4. Use a 5.0 ml graduated pipette to add to 4 test tubes the following volumes of
0.2M CoCL2 solution: 0.50, 1.00, 2.50, 3.50 ml. Rinse the pipette with distilled
water and add the exact volume of 0.12 M HCl to give a total of 5.0ml in each
tube. Calculate the molarity of COCl2 in each tube. Measure the %
transmission of each solution and of 0.2M COCl 2 at the peak absorption
obtained above, using 0.12M HCl as a blank. With the aid of log tables
convert your % values to absorbance values. Plot absorbance and % against
the molarity of the solution.
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Present your results in the following manner:
Result:
Absorbance
Wavelength (nM)
0.00625 mM Fast 0.1 M CoCl2
Green
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Questions and Exercises
1. Draw a schematic diagram of the instrument, labelling the important parts.
2. Which wavelength would you use to measure the concentration of K 2Cr2O7?
Of CoCl2.
3. What colour is light of the above wavelengths?
4. What is the relationship between the above colours and the colours of the
corresponding solutions?
5. What are the shapes of your plots of % T against molarity and of absorbance
against molarity for the cobalt chloride solutions? Which is the most useful
plot? Why?
6. Does the solution of cobalt chloride obey the Beer-Lambert Law?
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EXPERIMENT 3
PROPERTIES OF PROTEINS
This practical will demonstrate some properties of protein, which will have been
talked about during lectures.
REAGENTS:
(a) Place 5 ml of 0.5% albumin in three tubes labeled A, B and C. Add 0.5
ml 1 M HCl to A, 0.5 ml 1M NaOH to B, and 0.5 ml of water to C.
Place the tubes in a boiling water bath for 10 min. and cool to room
temperature. Adjust the acid and alkaline tubes to neutrality.
Comment on your observations.
(b) To 3 ml of egg albumin solution add 1 drop of 1% acetic acid. Mix and
boil for 10 seconds. A thick coagulum will be formed. Acetic acid is
being added to bring the reaction closer to the isoelectric point of the
denatured protein, which coagulates immediately after the solution has
been boiled. This test has an important clinical application.
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Place 2 ml of 0.5% egg albumin in two test tubes A and B. Add 5 drops of 5%
NaOH to each tube. Mix, boil the contents of tube B for 10 seconds and cool
thoroughly. Add 0.5 ml freshly prepared 2% sodium nitroprusside solution to
each tube. Comment on your observation.
3 Precipitation by alcohol
Into each of two test tubes A and B place 2 ml of 95% ethanol. To each tube
add 5 drops of plasma. Note the dense precipitate. Add 10 ml of water to A
and mix. The precipitate dissolves. Allow tube B to stand for 45 minutes and
add 10 ml of water. Comment on your observation.
In each of three test tubes place 2 ml of 0.5% egg albumin solution. To one
tube add 3 drops of 2% lead acetate; to another tube 3 drops of 2% silver
nitrate and to the third tube 3 drops of 4% mercuric chloride. Note the
formation of heavy precipitates in all three tubes.
5 Precipitation by anions
(a) Add a few drops of 20% sulphosalicylic acid to about 5 ml of 0.5% egg
albumin solution. Note the results.
This is a very sensitive test for albumin and is used for detecting it in
urine.
Perform the following experiment on plasma diluted ten times with water
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(b) To 10 ml of plasma add 10 ml of saturated ammonium sulphate. Mix
and filter the precipitated globulin. (if the filtrate is cloudy re-filter
through the same paper until a clear filtrate is obtained). The solution
is now 50% saturated with ammonium sulphate.
(c) Test part of the filtrate for protein by adding 1 drop of 1% acetic acid
and boiling for 10 seconds. A coagulum will show the presence of
albumin.
8. Xanthoproteic Reaction
To 2-3 ml of protein solution in a test tube add a few drops of conc. nitric
acid. Heat cautiously to boiling or until any precipitate which formed on
addition of the acid is dissolved. Cool the solution and add 6 M sodium
hydroxide in excess. The yellow colour deepens into orange.
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QUESTIONS
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EXPERIMENT 4
ENZYMOLOGY
1. INTRODUCTION
Living organisms are able to obtain and use energy very rapidly because of
the presence of enzymes. Enzymes increase the rate of specific biochemical
reactions and, therefore, are the catalysts of biological systems. Nearly all
known enzymes are globular proteins that have specially designed regions
that attract and bind substrate molecules. These regions, called active sites,
contain catalytic groups that are residues that directly participate in the
making and breaking of bonds.
The active site is a three-dimensional entity formed by groups that come from
different parts of the linear acid sequence. The catalytic efficiency of an
enzyme usually depends on this conformation. Consequently, changing the
optimal 3-dimensional structure of an enzyme can sometimes cause distortion
of its active site and reduce its efficiency as a biological catalyst.
One of the factors that play a significant role in maintaining an optimal and
stable 3-dimensional structure of an enzyme is the overall charge of the
surface of the enzyme protein. For this reason, pH conditions can greatly
influence the activity of an enzyme. If the pH of the medium containing the
enzyme becomes either too high or too low, the activity of the enzyme is often
reduced. Any enzyme will, therefore, show catalytic function within a specific
pH range. The variation of activity with pH is due to the change in the state of
ionisation of the enzyme protein (and other components of the reaction
mixture in some cases). In mammalian cells, various biochemical and
physiological processes maintain optimal pH conditions.
Objectives
The main objective of the following experiment is to demonstrate this in vitro and to
make you appreciate the significance of pH on enzyme – catalysed reactions using
-amylase as a model enzyme. Saliva contains -amylase which hydrolyses (1-4)-
glycosidic linkages at random resulting in a mixture of glucose and free maltose.
The effect of pH on the activity of -amylase will be demonstrated.
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2. MATERIALS
a) Salivary amylase
b) 0.06 M Na2HPO4
c) 0.06 M KH2PO4
d) 1% Starch solution in 0.01 M NaCl
e) 20% NaOH
f) 5% Methylamine Hydrochloride
PROCEDURE
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Tube 8 will be the blank of the colorimetric measurements.
Set a spectrophotometer at wavelength 520 nm and zero it with the blank solution in
tube 8. Read the intensity of the carmine colour in each of the test tubes 1–17. The
spectrophotometer recording for each tube is proportional to the amount of maltose
formed and, therefore, is a measure of the velocity of the amylase action.
NB: Please note the optimum pH for your saliva amylase for further use in
Experiment 10
3. DATA ANALYSIS
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4. QUESTIONS
a) NaOH was used to stop the reaction. Explain concisely the effect exerted by
NaOH in stopping the reaction.
b) Explain briefly the choice of 37oC for assaying salivary amylase activity.
c) What purpose was served by the blank (i.e., control tube No. 8)? Why was it
necessary to include such a control in the above experiment?
d) Would you expect the optimal pH of pepsin (e.g., in the human gut) to be
above or below that of salivary amylase. Give reasons for your answer.
e) Which of the following conditions in mammalian tissues is most likely to affect
the activity of salivary amylase;
(i) either acidosis or alkalosis
(ii) or both
Briefly explain your reasoning.
5. REFERENCES:
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EXPERIMENT 5
ENZYMOLOGY
1. INTRODUCTION
As is true for any catalyst, in the presence of excess substrate, the rate of an
enzyme-catalysed reaction is directly proportional to the concentration of the
enzyme.
K1 K2 K3
It is clear from the above that if [S] remains constant, [ES] will increase as [E]
increases up to the point of depletion of S. Beyond that point the rate of the reaction
will no longer be proportional to the concentration of the enzyme. Fig. 1 depicts the
relation between the rate of a reaction and an increasing enzyme concentration in
the presence of an excess of the compound, which is being transformed (also called
the substrate).
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4x
3x
Rate of Reaction
2x
1x
Time of reaction
Objectives
The major objective of this experiment is to demonstrate the effect of
increasing enzyme concentration on the rate of reaction catalysed by
the enzyme salivary amylase.
2. MATERIALS
a) Salivary amylase
Preparation: exactly as described in experiment 9
b) 0.06 M Na2HPO4
c) 0.06 M KH2PO4
d) 1 % starch solution in 0.01 M NaCl
e) 20 % NaOH
f) 5 % Methylamine hydrochloride
PROCEDURE
Prepare a set of 6 labelled test tubes as shown I Table 1, first mixing 0.06 M
Na2HPO4 and 0.06 M KH2PO4 in appropriate proportions too give a buffer
of the pH found to be optimum for the action of the enzyme (see your results of
previous experiment)
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Table 1: Reaction mixture for assaying salivary amylase activity
5 1.0 3.0 -
Incubate these tubes in a water bath at 37˚C for approximately 5 minutes. Add the
following volumes (see Table 2) of diluted saliva to each of tubes 1 – 5 at 30s
intervals and mix well. Tube 6 will be the blank of the colorimetric measurements.
1 0.2
2 0.4
3 0.6
4 0.8
5 1.0
Stop the reaction after exactly 10 minutes by adding 5 drops of 20 % NaOH and
mixing well. Add 5 drops of 20 % NaOH to the blank (tube 6). Remove the tubes
from the water bath. Add 0.2 ml 5 % methylamine hydrochloride to each tube (1 – 6)
and immediately place the tubes in a boiling water bath and heat for 2 minutes.
Transfer the tubes to a water bath at room temperature and leave to cool for about 3
minutes. Read the absorbance at 520 nm as before against the blank (tube 6).
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3. DATA ANALYSIS
Concentration of salivary amylase in the reaction mixture is directly proportional to
the volume of the diluted saliva added to each tube, can, therefore, be taken to
represent enzyme concentration in that tube. Record your results in the following
table (Table 3).
2 0.4
3 0.6
4 0.8
5 1.0
4. GENERAL QUESTIONS
(a) Why was it necessary to pre-incubate the reaction mixtures (tubes 1- 5)
before the addition of salivary amylase to initiate? How would the initial
reaction velocity of salivary amylase be affected if the pre-incubation stage
were omitted.
(b) What is the importance of the reaction catalysed by α-amylase?
(c) What would be the effect of incubation α-amylase with
i) glucose and protein solution?
ii) maltose and protein solution?
iii) starch and protein solution?
In each case clearly state your reasons and explain briefly what would be the effect
of increasing the enzyme concentration.
5. REFERENCES
a) Conn, E.E. and Stumpf, P.K. (1976) Outlines of Biochemistry, 4 th edition, John
Wiley & Sons Inc., Canada and USA, page 158.
b) Martin, D. W., Mayes, P.A. and Rodwell, V.W. (1981) Harper’s Review of
Biochemistry, 18th edition. Lange Medical Publications, California, USA page
73.
c) Plummer, D.T. (1978) Introduction to Practical Biochemistry. 2 nd edition,
McGraw –Hill Book Company (UK) Limited, page 248-249.
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EXPERIMENT 11
INTRODUCTION
Glucose is essential as an energy source for survival of mammalian tissues. It is
normally transported to different tissues of the body. Its concentration in the blood
varies between narrow limits. Normal fasting blood sugar range:65 – 95 mg
glucose/100 ml blood. However, in certain disease conditions the level may rise
(Hyperglycemia) due to over dosage with insulin in the treatment of diabetes. Insulin
– secreting tumors of the pancreas, hypothyroidism (Addison’s disease) are all
known to produce hypoglycemia. Liver malfunction usually affects the level of
glucose in the blood. Hence, it is seen that accurate determination of blood glucose
is useful in diagnosis of body malfunction.
REAGENTS
METHOD
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to inhibit glycolysis and therefore preserve sugar. Finally, the samples should be
stored at 50C and analysed as soon as possible.
(b) DEPROTEINISATION
The first step is removal of protein. For this purpose many substances can be
used, which include heavy metals, salts, acids and certain organic solvents.
Tungstic acid and trichloroacetic acid are the most often used.
Place for 10 minutes in a boiling water bath and then cool to room temperature
under running tap water. To each test tube add 2 ml of Nelson’s Solution, mixing
well after every addition. Dilute the contents to 25 ml with distilled water and allow
the test tube to stand at room temperature for 6 minutes, then record the
absorbance readings of the solutions at 580 nm.
Note:
SUPERNATANT
1.0 ml of analysis
Reference:
NELSON’S modification of the SOMOGYI Method: J. Biol. Chem., 153 (1944), 375
and J Biol. Chem. 195 (1952) 19.
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