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4 Department of Engineering Science, University of Oxford, Parks Road, Oxford, United Kingdom OX1
5 3PJ
6 * ian.thompson@eng.ox.ac.uk
8 This supporting information (SI) document contains 4 pages (including cover page),
13 baylyi ADP1_recA_lux.
15 coli HB101_pUCD607_lux.
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25 Optical density measures for determining microbial consortia growth curves
27 phosphate was measured. In each well of a 96-well plate 200 µL of solution consisting of 20
29 50 µL test compound solution, 130 µL feed (5g/L glucose, and 815 mg/L NH4Cl) were
30 added. Synergy HT Multi-detection Microplate Reader (Bio-Tek, UK) was used to take
33 A 96-well block (Corning-High Wycombe, UK) was prepared with each well containing 450
36 concentrations, and 250 µL of feed (5g/L glucose, and 815 mg/L NH4Cl). A 96-well plate
37 containing the indicator dye in gel form was placed on top of the block, sealed by silicon
38 rubber and left in a shaking incubator at 20 °C and 120 rpm for 20 h. Note that the results are
39 presented as % control and control wells contained 50 µL distilled water (as test compound).
41 One colony was inoculated into 5 mL of sterile lysogeny broth-Miller with 10 µg/L
42 kanamycin (Sigma Aldrich) (from here on referred to as LBK10) and incubated at 26 °C for
43 14-16 h at 120 rpm until cells reached mid-exponential growth phase. The cells of the
44 overnight culture were harvested by centrifugation at 3000 rpm for 10 min and resuspended
46 various concentrations) and 150 µL of the cell suspension was then transferred into each well
47 of a 96-well microplate (black, optically clear bottom, Corning). Bioluminescence and optical
48 density (at 630nm) were measured immediately after sample preparation using a Synergy HT
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49 Multi-Detection Microplate Reader (Bio-Tek, UK) at 10-min intervals for 6 h. All sample
50 assessments were carried out with 3-12 replicates. Relative bioluminescence (absolute
51 intensity divided by optical density) was calculated for each sample and used as an estimate
52 of the severity of DNA damage of the whole cell bioreporter. Ethidium bromide and
56 ampicillin, and incubated at 30 °C and 150 rpm agitation for 8 h until the cells reached mid-
57 exponential growth phase. The culture was then centrifuged at 3000 rpm at 4 °C. The cell
58 pellet was then re-suspended in 5 mL of the prepared broth (i.e. lysogeny broth-Miller with
59 50 µg/mL ampicillin). In each well of 96-well microplate (black, optically clear bottom,
60 Corning), 150 µL of biosensor and LBAMP and 50 µL of test compound was placed.
62 time 0 and after 30 minutes of being placed in a shaking incubator at 30 °C at 120 rpm. With
63 this biosensor, lower bioluminescence is associated with toxicity related to metabolic activity.
65 One colony was inoculated into 5 mL of Luria-Bertani (LB) broth with 5 g/L D-glucose
66 anhydrous (Fisher Scientific), and incubated at 27 °C for 14-16 h on a rotary shaker of 150
67 rpm. The cells were harvested by centrifugation at 3000 rpm for 5 min and resuspended in 5
68 mL of distilled water.
70 The glass coupons coated with microorganisms were treated with 1% osmium tetroxide for
71 30 minutes, and then dehydrated using ethanol in the following concertations: 30%, 50%,
72 70%, and 90% allowing for 10 minutes between each step. Samples were then dehydrated
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73 three times with absolute ethanol, with 20 minute intervals between each wash. After
75 minutes and then left to dry for 2 h. Gold coating of the surfaces was conducted using a
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