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Keywords: Teeth are important exhibits to establish the identity of unidentified dead bodies by DNA profiling. Tooth acts as
Forensic odontology a cage to protect DNA from harsh environmental conditions. Unidentified bodies are sometimes found many
Dead bodies years after death causing loss of valuable soft tissues which can be used for DNA extraction. Skeletal remains and
Dental DNA
dental evidence provide the best alternative when decomposed or burnt bodies are examined to establish the
Powder-free method
identity. In this study, the powder-free method was used to extract DNA from ninety-five teeth of unidentified
dead bodies across seven years (2014–2020). Intact and broken dental remains were analyzed majorly from
decomposed remains. The present study reports successful STR profiles obtained from dental evidence using
powder free method. Complete DNA profiles were obtained from intact teeth while damaged teeth either gave
partial profiles or no results. This data suggest that intact teeth are excellent samples for DNA profiling from
decomposed unidentified dead bodies even with greater post mortem interval. Findings from this study can
hence be useful in establishing the identity in forensic and archeological casework.
1. Introduction the selection of an appropriate technique for DNA analysis from these
tissues.12 In forensic science, DNA profiling has emerged as the new gold
Biological profiling of age, sex and race determination along with standard and is playing an important role in the biological identification
personal identification is an essential step in forensic investigation. of the dead bodies using short tandem repeats (STR) analysis, mito
Forensic laboratories frequently receive one or more biological evidence chondrial DNA (mtDNA) analysis, analysis of Y- chromosome, X-chro
types such as body fluids, tissues, bones etc. for identification of un mosome STR analysis and single nucleotide polymorphism (SNPs).13
identified dead bodies. Dead bodies are usually found in mass di Forensic odontology which deals with the different aspects of teeth in
sasters,1,2 terrorist attacks,3 wildfires,4 homicides,5,6 traffic accident,7 forensic investigations is playing a crucial role in the identification of
disaster victim identification,8 armed conflicts,9 wars10, plane acci dead bodies. Teeth are useful materials in forensic science for DNA
dents11 among many others. The visual identification of these dead extraction from dead bodies since it is a sealed box protecting DNA from
bodies on the basis of clothing and belongings is very difficult due to extreme environmental conditions and postmortem degradation such as
subjectivity. Most of these dead bodies are unclaimed at the time of their incineration, immersion, mutilation, decomposition, trauma and mi
recovery. It is the responsibility of law enforcement, public safety, and crobial action.14,15 Besides this, teeth are also easy to transport.15 The
health officials to identify the dead bodies so that they can be handed total yield of genomic DNA from the tooth may vary from 6 μg to 50
over to their families. Hence, the identification of unidentified and un μg.16 Thus, good quality and quantity of DNA can be extracted from a
claimed dead bodies is important from the social and legal perspective. tooth, which is advantageous for DNA analysis.17,18 Teeth is considered
As the decomposition of the dead sets in, soft tissues slowly degrade to be unique, possessing high stability and comparability even in
leaving behind skeletal remains and teeth which are good sources of extreme conditions.19 Structurally, the tooth is the hardest structure in
DNA. Identification is hence possible in stages of advanced decomposi the body consisting of enamel, dentine, cementum, root and pulp.
tion, buried and burnt remains apart from other factors of exposure. The Outermost layer is the enamel that protects the cementum that lines the
post mortem changes associated with the remains critically determines dentine beneath which the pulp is present.20,21 Due to enamel, teeth are
* Corresponding author.
E-mail addresses: nareshkumarbiotech85@gmail.com (N. Kumar), r.aparna@jainuniversity.ac.in (R. Aparna).
https://doi.org/10.1016/j.jflm.2021.102246
Received 19 May 2021; Received in revised form 10 August 2021; Accepted 16 August 2021
Available online 21 August 2021
1752-928X/© 2021 Published by Elsevier Ltd.
N. Kumar et al. Journal of Forensic and Legal Medicine 83 (2021) 102246
the hardest organs in the human body, which covers the crown (exposed teeth were vortexed for a few seconds and kept overnight in absolute
white portion) and dentine. Because of enamel, teeth are resistant to alcohol. Alcohol was drained out and teeth were dried at room tem
humidity, high temperature, and microbial action.22,23 However, the perature. After drying, teeth were broken with a hammer and all pieces
enamel is an acellular part that is made up of mineral (96%, by weight) along with the root were added in autoclaved micro vials (1.5 ml). To
and contains no DNA.24,25 The root is cellular part of tooth composed of the pieces, DNA extraction buffer (350 μl) and proteinase K (25 μl) was
dentine, cementum, pulp, and has been shown to yield more DNA than added, vortexed and incubated at 56 ◦ C for 72 h in an NB 20 water bath
the crown.26 There are two methods for extraction of DNA from tooth: (Nuve, Ankara, Turkey). The lysate from all samples was added into
destructive and non-destructive. The non-destructive method also called micro vials (1.5 ml). To the vials, 500 μl of phenol: chloroform: isoamyl
as powder-free method yields good quantity of DNA as all parts of the alcohol (25:24:1) was added, vortexed for few seconds and spun in a
tooth i.e. enamel, dentine, cementum and pulp are involved in DNA rotospin (Tarsons, India) for 10 minutes. The tubes were centrifuged at
extraction. In destructive method, forceful mechanical destruction of the 12,000 rpm for 10 minutes in a 5430 R refrigerated centrifuge
tooth by grinder or tissue lyser may compromise the quality and quan (Eppendorf, Hamburg, Germany). The upper aqueous layer was
tity of the extracted DNA.27 removed carefully and added in other micro vials. Then, 500 μl of
Dental anomalies can additionally be helpful during post mortem phenol: chloroform: isoamyl alcohol (25:24:1) was added again and the
identification by biological profiling in comparison with ante mortem previous step was repeated to get good quality of DNA. To the aqueous
data.19 Keeping in view importance of teeth in forensic science, this layer, 100 μl of sodium acetate (2 M) and chilled absolute alcohol (1000
study was designed to check the effect of post-mortem interval and μl) was added and kept for overnight precipitation at − 20 ◦ C in a
condition of the teeth on STR based DNA profiling recovered from un refrigerator (Celfrost, India). After precipitation, tubes were centrifuged
identified dead bodies. at 14,000 rpm for 15 minutes using 5430 R refrigerated centrifuge
(Eppendorf, Hamburg, Germany). The supernatant was discarded care
2. Methodology fully and 70% alcohol (500 μl) was added. The tubes were centrifuged at
10,000 rpm for 5 minutes and the supernatant was discarded carefully.
The DNA profiling of ninety-five teeth (n = 95) from unidentified This step was repeated once and micro vials were dried in a digital dry
dead bodies were done as routine laboratory work in the DNA Division, bath (Labnet, New Jersey, United States) at 56 ◦ C for 30 minutes. To the
State Forensic Science Laboratory, Junga, Shimla, Himachal Pradesh micro vials, 18 μl of TE buffer was added and put in a dry bath at 56 ◦ C
from 2014 to 2020. The post-mortem interval of dead bodies was same for 10 min. The DNA was stored at − 20 ◦ C in a refrigerator (Celfrost,
day, after first, second, third, fourth, fifth and more than seven days of India) for further use. The isolated DNA was assessed using agarose gel
their recovery. The most common post-mortem interval was first day. electrophoresis (0.8%) and 1 ng of DNA was used for PCR amplification.
The teeth were received for identification from different police stations
of Himachal Pradesh. The types of teeth were incisors, canines, pre 2.2. PCR amplification
molars and molars, which were received in intact and broken conditions.
PowerPlex® 21 System kit was purchased from Promega Corporation, The PCR amplification of few DNA samples was performed using
Wisconsin, United States and GlobalFiler™ kit was procured from PowerPlex® 21 System kit (Promega Corporation, Wisconsin, United
Thermo Fisher Scientific, Massachusetts, United States. States) and some with GlobalFiler™ kit (Thermo Fisher Scientific,
Massachusetts, United States) kits. The PowerPlex® 21 System kit am
2.1. DNA extraction plifies 20 autosomal STR loci (D3S1358, D1S1656, D6S1043, D13S317,
Penta E, D16S539, D18S51, D2S1338, CSF1PO, Penta D, TH01, vWA,
The organic extraction method given by Sambrook and Russell28 was D21S11, D7S820, D5S818, TPOX, D8S1179, D12S391, D19S433, FGA)
used for DNA extraction from teeth with slight modifications. The and the amelogenin gender determining marker in a single PCR ampli
powder-free approach was used to break teeth. The teeth were scrapped fication run. The amplification was performed using 5 μl of the master
with sterilized blades to avoid microbial contamination. For cleaning, mix, 5 μl of primer mix and 15 μl of isolated DNA in separately labelled
Fig. 1. Conditions of dead bodies found as a part of case work from 2014 to 2020.
2
N. Kumar et al. Journal of Forensic and Legal Medicine 83 (2021) 102246
Fig. 2. Electropherogram of DNA from tooth (Representative sample) from a body at advanced stage of decomposition showing amplification at 21 loci (Power
Plex®21 System kit).
PCR tubes with 25 μl of reaction volume. The amplification was done performed using 7.5 μl of the master mix, 2.5 μl of primer mix and 15 μl
using GeneAmp®PCR System 9700 and Veriti Dx thermal cyclers of isolated DNA with 25 μl of reaction volume. The contents were vor
(Applied Biosystems, U.S.A.). The following protocol was set for PCR texed for a few seconds and amplification was done with
amplification: 96 ◦ C for 1 minute, 94 ◦ C for 10 seconds, 59 ◦ C for 1 GeneAmp®PCR System 9700 and Veriti Dx thermal cyclers (Applied
minute, 72 ◦ C for 30 seconds for 30 cycles, then 60 ◦ C for 10 minutes and Biosystems, U.S.A.). Control DNA 007 as positive and nuclease free
4 ◦ C soak. 2800 M DNA as positive and nuclease free water as a negative water as a negative control was used to check the quality of the kit. The
control for quality management. following protocol was set for PCR amplification: 95 ◦ C for 1 minute,
The GlobalFiler™ kit amplifies 21 autosomal STR loci (D3S1358, 94 ◦ C for 10 seconds, 59 ◦ C for 90 seconds, 60 ◦ C for 10 minutes for 29
vWA, D16S539, CSF1PO, TPOX, D8S1179, D21S11, D18S51, D2S441, cycles, then 4 ◦ C hold. The amplified products were stored at 4 ◦ C in a
D19S433, TH01, FGA, D22S1045, D5S818, D13S317, D7S820, SE33, refrigerator.
D10S1248, D1S1656, D12S391, D2S1338), amelogenin, and two male
specific markers (Y-Indel and DYS391). PCR amplification was
3
N. Kumar et al. Journal of Forensic and Legal Medicine 83 (2021) 102246
Fig. 3. Electropherogram of DNA from tooth (Representative sample) from a skeletonized body showing amplification at 24 loci (GlobalFiler™ kits).
2.3. Capillary electrophoresis cooled to 4 ◦ C for completion of the denaturation process. The denatured
samples were run using POP-4 as a sieving matrix. The analytical and
The capillary electrophoresis of amplified PCR products from Pow stochastic thresholds along with Injection time and voltage were set as
erPlex® 21 System kit was done with ABI 3130 genetic analyzer per recommended by the manufacturers of the amplification kits. The
(Applied Biosystems, U.S.A.) using 9.5 μl of Hi-Di formamide, 0.5 μl genotyping was carried out with GeneMapper® ID Software Version 3.2
WEN ILS 500 size standard and 1 μl allelic ladder. In addition to this, (PowerPlex® 21 System kit) and GeneMapper™ID-X Software v 1.6
capillary electrophoresis from GlobalFiler™ PCR kit was done with ABI (GlobalFiler™ kit).
3500 and 3500XL Genetic Analyzers (Applied Biosystems, U.S.A.) using
9.6 μl of Hi-Di formamide, 0.4 μl of GeneScan 600 LIZ size standard and 3. Results
1 μl of the allelic ladder. The 96 well plates was denatured at 95 ◦ C for 5
min in GeneAmp®PCR System 9700 and Veriti Dx thermal cyclers and A total of ninety-five teeth were analyzed in the present study. 88
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N. Kumar et al. Journal of Forensic and Legal Medicine 83 (2021) 102246
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N. Kumar et al. Journal of Forensic and Legal Medicine 83 (2021) 102246
Declaration of competing interest 18. Pinchi V, Torricelli F, Nutini AL, Conti M, Iozzi S, Norelli GA. Techniques of dental
DNA extraction: some operative experiences. Forensic Sci Int. 2011;204:111–114.
https://doi.org/10.1016/j.forsciint.2010.05.010.
The authors declare that they have no conflicts of interest. 19. Puri P, Shukla SK, Haque I. Developmental dental anomalies and their potential role
in establishing identity in post-mortem cases: a review. Med Leg J. 2019;87:13–18.
Acknowledgements https://doi.org/10.1177/0025817218808714.
20. Garriga JA, Ubelaker DH, Zapico SC. Evaluation of macroscopic changes and the
efficiency of DNA profiling from burnt teeth. Sci Justice. 2016;56:437–442. https://
The authors are thankful to the Director, Directorate of Forensics doi.org/10.1016/j.scijus.2016.06.006.
Services, Junga, Shimla, Himachal Pradesh to provide the laboratory 21. Yukseloglu E, Dastan K, Yonar F, et al. The comparison of DNA extraction techniques
in human bone and tooth samples exposed to high heat. Med Sci ¦ Int Med J. 2019;
space and instruments to carry out this research work. The authors are 489. https://doi.org/10.5455/medscience.2019.08.9051.
also grateful to the Department of Home, Government of Himachal 22. Shah P, Velani P, Lakade L, Dukle S. Teeth in forensics: a review. Indian J Dent Res.
Pradesh for providing funding to purchase chemicals and kits for routine 2019;30:291–299. https://doi.org/10.4103/ijdr.IJDR_9_17.
23. Manjunath BC, Chandrashekar BR, Mahesh M, Vatchala Rani RM. DNA profiling and
case work. forensic dentistry - a review of the recent concepts and trends. J Forensic Leg Med.
2011;18:191–197. https://doi.org/10.1016/j.jflm.2011.02.005.
References 24. Ten Cate’s Oral Histology - ninth ed., (n.d.). https://www.elsevier.com/books/ten-c
ates-oral-histology/nanci/978-0-323-48524-1 (accessed May 10, 2021).
25. Mörnstad H, Pfeiffer H, Yoon C, Teivens A. Demonstration and semi-quantification
1. Budowle B, Bieber FR, Eisenberg AJ. Forensic aspects of mass disasters: strategic
of mtDNA from human dentine and its relation to age. Int J Leg Med. 1999;112:
considerations for DNA-based human identification. Leg Med. 2005;7:230–243.
98–100. https://doi.org/10.1007/s004140050209.
https://doi.org/10.1016/j.legalmed.2005.01.001.
26. Dobberstein RC, Huppertz J, von Wurmb-Schwark N, Ritz-Timme S. Degradation of
2. Challenges of DNA profiling in mass disaster investigations - PubMed. n.d. https://
biomolecules in artificially and naturally aged teeth: implications for age estimation
pubmed.ncbi.nlm.nih.gov/16100756/. Accessed April 29, 2021
based on aspartic acid racemization and DNA analysis. Forensic Sci Int. 2008;179:
3. Biesecker LG, Bailey-Wilson JE, Ballantyne J, et al. DNA identifications after the 9/
181–191. https://doi.org/10.1016/j.forsciint.2008.05.017.
11 world trade center attack. Science. 2005;80–:310.
27. A systematic approach to the sampling of dental DNA - PubMed. n.d. https://pub
4. Gin K, Tovar J, Bartelink EJ, et al. The 2018 California wildfires: integration of rapid
med.ncbi.nlm.nih.gov/8228888/. Accessed May 10, 2021
DNA to dramatically accelerate victim identification. J Forensic Sci. 2020;65:
28. Molecular Cloning This is a free sample of content from Molecular Cloning: A Laboratory
791–799. https://doi.org/10.1111/1556-4029.14284.
Manual, fourth ed.; 2012. Click here for more information or to buy the book www.
5. Prahlow JA, Cameron T, Arendt A, et al. DNA testing in homicide investigations.
cshlpress.org. Accessed May 11, 2021.
Med Sci Law. 2017;57:179–191. https://doi.org/10.1177/0025802417721790.
29. Simoes H, Correa D, Gabriel L, et al. Powder-Free DNA Extraction from Post-Mortem
6. Kumar N, Chauhan A, Gupta R, Maitray A, Sharma D. Effect of Fire on DNA and its
Teeth. 2019.
profiling in homicide cases. Forensic Res Criminol Int J. 2019;7. https://doi.org/
30. de Boer HH, Maat GJR, Kadarmo DA, Widodo PT, Kloosterman AD, Kal AJ. DNA
10.15406/frcij.2019.07.0268.
identification of human remains in Disaster Victim Identification (DVI): an efficient
7. Taki T, Machida M, Shimada R. Trends of traffic fatalities and DNA analysis in traffic
sampling method for muscle, bone, bone marrow and teeth. Forensic Sci Int. 2018;
accident investigation. IATSS Res. 2019;43:84–89. https://doi.org/10.1016/j.
289:253–259. https://doi.org/10.1016/j.forsciint.2018.05.044.
iatssr.2019.05.001.
31. Rubio L, Sioli JM, Gaitán MJ, Martin-de-las-Heras S. Dental color measurement to
8. Prinz M, Carracedo A, Mayr WR, et al. DNA Commission of the International Society
predict DNA concentration in incinerated teeth for human identification. PloS One.
for Forensic Genetics (ISFG): recommendations regarding the role of forensic
2018;13. https://doi.org/10.1371/journal.pone.0196305.
genetics for disaster victim identification (DVI). Forensic Sci Int Genet. 2007;1:3–12.
32. Corrêa HSD, Pedro FLM, Volpato LER, Pereira TM, Siebert Filho G, Borges ÁH.
https://doi.org/10.1016/j.fsigen.2006.10.003.
Forensic DNA typing from teeth using demineralized root tips. Forensic Sci Int. 2017;
9. Goodwin WH. The use of forensic DNA analysis in humanitarian forensic action: the
280:164–168. https://doi.org/10.1016/j.forsciint.2017.10.003.
development of a set of international standards. Forensic Sci Int. 2017;278:221–227.
33. DNA analysis of dental pulp to link incinerated remains of homicide victim to crime
https://doi.org/10.1016/j.forsciint.2017.07.002.
scene - PubMed. n.d. https://pubmed.ncbi.nlm.nih.gov/7602298/. Accessed May
10. Roewer L. DNA fingerprinting in forensics: past, present, future. Invest Genet. 2013;4:
11, 2021
22. https://doi.org/10.1186/2041-2223-4-22.
34. Different dental tissues as source of DNA for human identification in forensic cases -
11. Nedić D, Pilija V. The challenges of forensic medical expertise in aircraft accidents: a
PubMed. n.d. https://pubmed.ncbi.nlm.nih.gov/12808723/. Accessed May 11,
case report. J Indian Acad Forensic Med. 2020;42:63–65. https://doi.org/10.5958/
2021
0974-0848.2020.00016.0.
35. View of Identification of a Severely Decomposed Body by Dental DNA STR Analysis:
12. Mansour H, Krebs O, Sperhake JP, et al. Cementum as a source of DNA in
A Case Report (n.d.) https://journals.nauss.edu.sa/index.php/AJFSFM/article/vie
challenging forensic cases. J Forensic Leg Med. 2018;54:76–81. https://doi.org/
w/727/pdf. Accessed May 11, 2021.
10.1016/j.jflm.2017.12.015.
36. (7) (PDF) Powder-Free DNA Extraction from Post-Mortem Teeth. n.d. https://www.
13. Lynch M. God’s signature: DNA profiling, the new gold standard in forensic science.
researchgate.net/publication/336613625_Powder-Free_DNA_Extraction_from_Po
Endeavour. 2003;27:93–97. https://doi.org/10.1016/S0160-9327(03)00068-1.
st-Mortem_Teeth. Accessed May 11, 2021
14. Why a dentist for identification? - PubMed. n.d. https://pubmed.ncbi.nlm.nih.gov/
37. Kitayama T, Ogawa Y, Fujii K, et al. Evaluation of a new experimental kit for the
11370453/. Accessed May 10, 2021
extraction of DNA from bones and teeth using a non-powder method. Leg Med. 2010;
15. A minimally destructive technique for sampling dentin powder for mitochondrial
12:84–89. https://doi.org/10.1016/j.legalmed.2009.12.004.
DNA testing - PubMed. n.d. https://pubmed.ncbi.nlm.nih.gov/15317196/. Accessed
38. Hervella M, Iñiguez MG, Izagirre N, Anta A, De-la-Rúa C. Nondestructive methods
May 10, 2021
for recovery of biological material from human teeth for DNA extraction. J Forensic
16. Pötsch L, Meyer U, Rothschild S, Schneider PM, Rittner C. Application of DNA
Sci. 2015;60:136–141. https://doi.org/10.1111/1556-4029.12568.
techniques for identification using human dental pulp as a source of DNA. Int J Leg
39. Gomes C, Palomo-Díez S, Roig J, et al. Nondestructive extraction DNA method from
Med. 1992;105:139–143. https://doi.org/10.1007/BF01625165.
bones or teeth, true or false? Forensic Sci Int Genet Suppl Ser. 2015;5:e279–e282.
17. Corte-Real A, Andrade L, Anjos MJ, et al. The DNA extraction from the pulp dentine
https://doi.org/10.1016/j.fsigss.2015.09.111.
complex of both with and without carious. Int Congr Ser. 2006;1288:710–712.
https://doi.org/10.1016/j.ics.2005.11.053.