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10.1007@s11274 020 02963 7
10.1007@s11274 020 02963 7
https://doi.org/10.1007/s11274-020-02963-7
ORIGINAL PAPER
Abstract
The use of starter cultures during food fermentation aims to standardize the process and to obtain a higher quality product.
The objectives were to study mesophilic bacteria (MB) and lactic acid bacteria (LAB) isolated from wet coffee processing
and evaluate their performance in a pulped coffee medium. Eighty-six bacteria isolates (59 MB and 27 LAB) were assessed
for pectinolytic activity, metabolite production, and pH value decrease in coffee-based culture (CPM). Seven bacteria strains
(3 MB and 4 LAB) were selected and used as starter cultures in the wet fermentation of pulped coffee. The MB and LAB
populations varied from 4.48 to 8.43 log CFU g−1 for MB and 3.54 to 8.72 log CFU g−1 for LAB during fermentation.
Organic acid concentration (ranged from 0.01 to 0.53 for succinic acid; 0.71 to 8.14 for lactic acid and 0.06 to 0.29 for acetic
acid), and volatile compounds (44 compounds were detected in green beans and 98 in roasted beans) were evaluated during
fermentation. The most abundant compounds found in roasted beans belong to furans [15], ketones and esters [14], pyridines
[13], and pyrazines [12]). Leuconostoc mesenteroides CCMA 1105 and Lactobacillus plantarum CCMA 1065 presented
volatile compounds important for coffee aroma. Isovaleric acid; 2,3-butanediol; phenethyl alcohol; β-linalool; ethyl linoleate;
and ethyl 2-hydroxypropanoate could improve cupping qualities.
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Graphic abstract
Keywords Acid lactic bacteria · Arabica · Coffee aroma · Coffee fermentation · Mesophilic bacteria · Volatile metabolites
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as starter cultures that can and should be exploited, espe- MgSO4 0.02%, CaCl2 0.0002%, H3BO3 0.0002%, 0.0002%,
cially for wet processing. M nSO 4, 0.0014%, Z nSO 47H 2O, 0.001%, C uSO 45H 2O,
Microbial starter cultures produce coffee with different 0.0002% MoO3) for determination of the activity of the PG
aromas and flavors, leading to new perspectives on cof- enzyme. The determination of the PL enzyme activity was
fee quality. The relationship between coffee fermentation carried out using an MP7 medium; this had the same con-
and coffee aroma profile is very close (Jackels and Jackels stitution as described above, except for a substitution of
2005; Jackels et al. 2006; Gonzaléz-Rios et al. 2007; Lin polygalacturonic acid for the citrus pectin. A CTBA solu-
2010). With optimized parameters and selection of starter tion 1% (polygalacturonic acid and pectin with cetylmethyl
cultures to remove mucilage, controlled fermentation might ammonium bromide) was used as the revealed solution
confer specific desirable attributes to coffee beverages. The for the enzymatic assay, being considered positive when
targeted use of different bacteria species would lead to a there was the formation of clear halo around the colony.
greater diversification of flavors, which is already evident in The yeast Kluyveromyces marxianus CCT 3172 (Schwan
the fermented food and wine industry (Marshall and Mejia et al. 1997) was used as a positive control.
2011). Therefore, this work’s objective was to select bacteria
strains isolated from arabica coffee fruits capable of produc-
ing organic acids and volatile compounds during wet coffee Quantification of pectin lyase (PL) and pectin
fermentation. methylesterase (PME) activity
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The bacteria fermentation were carried out in a culture Malic, lactic, acetic, butyric, propionic, citric, oxalic, suc-
medium containing coffee pulp (CPM) as described in cinic, and tartaric acid were analyzed by high-performance
Silva et al. (2013):100 g of coffee cherries were homog- liquid chromatography (HPLC). Samples of fermented
enized in a Stomacher ® with 1 L of distilled water for coffee medium were centrifuged (10.000 rpm at 4 °C for
10 min; it was then filtered, and 0.5% of glucose was 10 min), and the supernatant was filtered using a 0.22 μm
added. The pH value was adjusted to 5.5 with HCl (0.1 M) cellulose acetate filter. The extracts were analyzed using an
solution, and the media were sterilized in flowing steam HPLC system (Shimadzu, Japan). A Shimpack SCR-101H
for 20 min. (7.9 mm × 30 cm) column was used with a 100 mM solu-
The bacteria were grown up to a concentration of tion of perchloric acid with a flow rate of 0.6 mL/minute as
10 CFU mL−1 in NB for MB and MRS for LAB. Subse-
7
the mobile phase. The oven temperature was kept at 50 °C,
quently, the cells were centrifuged and resuspended in ster- detected with a 210 nm UV detector. The compound quan-
ile peptone water (0.1%). The inoculum (107 CFU mL−1) tification was performed using calibration curves, differ-
was transferred separately to 500 mL flasks containing ent standard concentrations were analyzed using the same
CPM medium (100 mL) and kept at 30 °C for 48 h. Sam- conditions used for the samples, and the analyses were per-
ples were collected at intervals (12, 24, and 48 h of fer- formed in triplicate.
mentation and final drying) for chemical and microbio-
logical analysis. The fermentations were carried out in Second experimental stage
triplicate.
Coffee fermentation inoculated with bacteria
Microbiological analysis Selected bacteria strains were used to carry out fermenta-
tion on a larger scale and the control fermentation, which
Serial decimal dilutions were performed with sterile pep- is without inoculation. Coffee cherries of the Catuaí Ver-
tone water (0.1% bacteriological peptone) to assay the MB melho variety were mechanically harvested on a farm
and LAB population. The MB population was quantified on located in Lavras, Minas Gerais State, Brazil, at 900 m
nutrient agar, and LAB was quantified on MRS agar. The above sea level. Three kilograms of pulped coffee were
plates were incubated at 30 °C and 35 °C, respectively, for fermented in plastic buckets with 2 L of sterile distilled
48 h. water. A population of 107 CFUg−1 of coffee of the cho-
sen strains was inoculated separately in each vessel. The
fermentation time was 48 h. After fermentation, the water
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Fig. 2 Mesophilic bacterial population (Log10 CFU g-1 ) and pH (42) P. lactis; (43–44) A. koreensis; (45) R. radiobacter; (46) R. puse-
( ) of culture medium containing coffee pulp at final fermenta- nse; (47–48) M. paraoxydans; (49–52) M. testaceum; (53–54) R. pyri-
tion. (1–11) B. subtilis; (12–19) B. pumilus; (20) B. safensis; (21–22) dinivorans; (55–57) P. vagans; (58–59) P. agglomerans. The stand-
B. megaterium; (23–26) B. clausii; (27) B. licheniformis; (28) B. asa- ard deviation of the mean pH was less than 0.05. Error bars represent
hii; (29–30) B. horneckiae; (31) B. humi; (32) B. simplex; (33–34) L. standard deviations of means of population. There was a statistical
fusiformys; (35–36) L. macrolides; (37) B. parabrevis; (38) P. psy- difference at p < 0.05 by the Scott–Knott test
chrotolerans; (39) P. illinoisensis; (40) P. konsidensis; (41) P. cookie;
Fig. 3 Lactic acid bacterial population (Log10 CFU g-1 ) and pH ard deviation of the mean pH was less than 0.05. There was a statisti-
( ) of culture medium containing coffee pulp at final fermenta- cal difference at p < 0.05 by the Scott–Knott test
tion. (1–17) Leu. mesenteroides; (18–27) Lac. plantarum. The stand-
Arthrobacter koreensis CCMA 1157 and P. dispersa almost all Leu. mesenteroides (CCMA 1083, CCMA 1085,
CCMA 1278 were mainly characterized by propionic acid CCMA 1087, CCMA 1090, CCMA 1109, and CCMA 1112)
production. tested were characterized by acetic acid production.
Succinic and acetic acids were primarily associated with Microbancterium testaceum CCMA 1147 and 1148,
Microbacterium paraoxydans CCMA 1152, Rhizobium Lactobacillus plantarum CCMA 1065, and CCMA 1072
radiobacter CCMA 1212, and R. pusense CCMA 1200, and were characterized by lactic acid production. Strains
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Table 2 Pectin lyase (PL) No. Strain Species PLa (U/mL) PMEb (mL−1 h−1)
and pectin methyl esterase
(PME) activities quantified in 1 CCMA 1234 Bacillus subtilis 0.073 ± 0.01c 0.100 ± 0.01a
CPM medium fermented with
2 CCMA 1228 0.013 ± 0.03a 0.250 ± 0.00b
mesophilic and lactic acid
bacteria 3 CCMA 1236 0.064 ± 0.00c 0.070 ± 0.00a
4 CCMA 1237 0.057 ± 0.02c 0.100 ± 0.06a
5 CCMA 1238 0.033 ± 0.01b 0.483 ± 0.03d
6 CCMA 1239 0.021 ± 0.00b 0.450 ± 0.00d
7 CCMA 1240 0.024 ± 0.03b nd
8 CCMA 1241 0.005 ± 0.02a 0.250 ± 0.00b
9 CCMA 1242 0.029 ± 0.00b 0.383 ± 0.03c
10 CCMA 1244 0.001 ± 0.02a 0.250 ± 0.00b
11 CCMA 1248 Bacillus pumilus 0.016 ± 0.00a nd
12 CCMA 1251 0.025 ± 0.01b nd
13 CCMA 1273 0.010 ± 0.02a 0.250 ± 0.00b
14 CCMA 1253 Paenibacillus konsidensis 0.073 ± 0.01c 0.100 ± 0.06a
15 CCMA 1211 Pantoea agglomerans 0.033 ± 0.01b 0.070 ± 0.04a
16 CCMA 1278 Pantoea dispersa 0.055 ± 0.05b 0.633 ± 0.03e
17 CCMA 1279 Arthrobacter korensis 0.001 ± 0.00a nd
nd not detected. a–e mean values with different letters are significant at p < 0.05 for each treatment based
on the Scott–Knott test
a
Expressed as the amount (in μmol) of unsaturated galacturonides/min per ml of culture supernatant U/mL)
b
Expressed as micro equivalents of pectic acid released per ml−1 h−1)
Fig. 4 Population count (log10 CFUg-1) of mesophilic bacteria (a) (----); Lac. plantarum CCMA 1065 (.....); Microbacterium testaceum
and lactic acid bacteria (b) during fermentation and drying of wet- CCMA 1151 (♦); Bacillus pumilus CMMA 1251 (▲) and Bacillus
processed coffee. Control (•); Leu. mesenteroide CCMA 1105 (*); subtilis CCMA 1234 (■)
Leu. mesenteroide CMMA 1082 (×); Lac. plantarum CCMA 1072
belonging to the Lac. plantarum species increased the Use of starter selected bacteria in wet coffee
lactic acid concentration by more than 50%. Based fermentation
on these criteria, the selected strains were B. subtilis
CCMA 1234, B. pumilus CCMA 1251, Microbacterium Three MB and four LAB strains were inoculated separately
testaceum CCMA 1151, Leu. mesenteroides CCMA in wet coffee fermentation. Among the MB count tested,
1082 and CCMA 1105, Lac. plantarum CCMA 1065 there was a significant difference (p < 0.05) in the treatments
and CCMA 1072. and fermentation time (Fig. 4a). During fermentation (T12
to T48), there was a significant decrease (p < 0.05) in MB in
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Fig. 5 Organic acid concentration (mg g−1) of culture medium con- (×); Lac. plantarum CCMA 1072 (----); Lac. plantarum CCMA 1065
taining coffee pulp fermented with Mesophilic Bacteria at final fer- (.....); Microbacterium testaceum CCMA 1151 (♦); Bacillus pumilus
mentation. a Succinic acid; b lactic acid; c acetic acid. Control (•); CMMA 1251 (▲) and Bacillus subtilis CCMA 1234 (■)
Leu. mesenteroide CCMA 1105 (*); Leu. mesenteroide CMMA 1082
almost all the fermentations. However, in treatments inocu- in succinic acid concentration in all treatments. The fer-
lated with B. subtilis CCMA 1234 and B. pumilus CCMA mentation with Leu. mesenteroides CCMA 1105 presented
1251, there was an increase in population (from 4.91 to 5.34 the highest concentration of succinic acid (0.54 mg g−1),
and 5.34 to 6.04 log CFU g−1, respectively). After T48 of and Leu. mesenteroides CCMA 1082 presented the lowest
fermentation, the MB decreased its population. There was concentration (0.22 mg g−1).
a significant increase (p < 0.05) in the LAB population in There was an increase (p < 0.05) in lactic acid con-
fermentations inoculated with MB. The fermentation inocu- centration, with the highest increase in final drying time
lated with Lac. plantarum CCMA 1065, CCMA 1072, and (dried coffee) (Fig. 5b). The fermentation inoculated with
Leu. mesenteroide CCMA 1105 showed a decrease of the LAB showed a higher lactic acid concentration, which was
LAB population (reaching the end of fermentation [T48] already expected. The fermentation with MB showed 5.0
with an average population of 7,24; 6,85 and 6.65 log and 5.9 mg g −1 of lactic acid, while fermentation with
CFU g−1, respectively). LAB showed 7.6 and 8.1 mg g −1. The highest concen-
Succinic, lactic, and acetic acids were detected, and tration of acetic acid was found in fermentation without
there was a significant difference (p < 0.05) among treat- inoculation (control—0.18 mg g−1) in 48 h of fermenta-
ments (Fig. 5), and these acids, the lactic acid was pro- tion (Fig. 5c). All treatments showed an increase in ace-
duced in greater concentration in all fermentations. There tic acid concentration at the end of fermentation (T48)
was a decrease in the succinic acid concentration (Fig. 5a) (Fig. 5c). Acetic acid was not detected in the fermentation
inoculated with MB and Leu. mesenteroides CCMA1082. inoculated with Leu. mesenteroides CCMA 1105 at any
Inoculated fermentation with LAB (Leu. mesenteroides sampling time, and in fermentations with Lac. plantarum
CCMA 1105, Lac. plantarum CCMA 1065, and CCMA CCMA 1072 and 1065 presented low concentrations of
1072) showed an increase in the succinic acid concentra- this acid, which seems to be a positive point for the use of
tion (Fig. 5a). At the end of drying, there was an increase these starter cultures.
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Table 3 Volatile compounds identified in green coffee at the end of spontaneous and inoculated wet fermentation via headspace-solid phase
microextraction/gas chromatography-mass spectrometry (HS-SPME/GC–MS)
Compounds Treatments*
A A1 B B1 C C1 D D1 E E1 F F1 G G1 H H1 I I1 J J1
Acids
Acetic acid
Isolvaleric acid
Hexadecanoic acid
Tetradecanoic acid
Hexanoic acid
Octanoic acid
Alcohols A A1 B B1 C C1 D D1 E E1 F F1 G G1 H H1 I I1 J J1
1-Hexadecanol
2-Heptanol
2,3-Butanediol
5-methyl-2-hexanol
Benzyl alcohol
1-phenoxypropan-2-ol
Phenethyl alcohol
Pentadecanol
Tetradecanol
Tridecanol
Dodecanol
β-linalool
Phytol
Aldehydes and Ketones A A1 B B1 C C1 D D1 E E1 F F1 G G1 H H1 I I1 J J1
Acetoin
Benzaldehyde
Pentadecanal
2-Hexenal
9,17-Octadecadienal, (Z)-
2-Pentadecanone, 6,10,14-
trimethyl-
(E)-Geranyl acetone
2,4-Hexadienal, (E,E)-
Esters A A1 B B1 C C1 D D1 E E1 F F1 G G1 H H1 I I1 J J1
Methyl hexadecanoate
Ethyl hexadecanoate
Diisobutyl phthalate
Ethyl 2-hydroxypropanoate
Ethyl linoleate
Ethyl benzeneacetate
Hydrocarbons A A1 B B1 C C1 D D1 E E1 F F1 G G1 H H1 I I1 J J1
Heptadecane
Hexadecane
Hexacosane
Tetracosane
Octadecane
Others** A A1 B B1 C C1 D D1 E E1 F F1 G G1 H H1 I I1 J J1
Methyl salicylate
Vanillin
Heneicosane
Caffeine
*Treatments: Spontaneous fermentation (A); B. subtilis CCMA1234 (B); B. pumilus CCMA1251 (C); C. cellulans
CCMA1186 (D); P. dispersa CCMA1203 (E); M. testaceum CCMA1151 (F); Leu. mesenteroides CCMA1082 (G); Leu.
mesenteroides CCMA1105 (H); Lac. plantarum CCMA1065 (I); Lac. plantarum CCMA1072 (J). Capital letters without
number: the beginning of fermentation; Capital letters with subscript number: end of fermentation. **Included: Alkaloids.
*Treatments: spontaneous fermentation (A); B. subtilis CCMA1234 (B); B. pumilus CCMA1251 (C); C. cellulans CCMA1186 (D); P. dispersa
CCMA1203 (E); M. testaceum CCMA1151 (F); Leu. mesenteroides CCMA1082 (G); Leu. mesenteroides CCMA1105 (H); Lac. plantarum
CCMA1065 (I); Lac. plantarum CCMA1072 (J). Capital letters without number: the beginning of fermentation; Capital letters with subscript
number: end of fermentation
**Included: alkaloids
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Table 4 (continued) Maltol
4H-Pyran-4-one, 2,3-dihydro-3,5-dihydroxy-6-methyl-
Ethanone, 1-(2-hydroxy-5-methylphenyl)
Pyrazines A B C D E F G H I J
Pyrazine, methyl-
Pyrazine, 2,6-dimethyl-
Pyrazine, 2-ethyl-6-methyl-
Pyrazine, trimethyl-
5H-5-Methyl-6,7-dihydrocyclopentapyrazine
1-(6-Methyl-2-pyrazinyl)-1-ethanone
Pyrazine, 2-ethyl-5-methyl-
Pyrazine, 2,5-dimethyl-
Pyrazine, 3-ethyl-2,5-dimethyl-
2-Butyl-3-methylpyrazine
2-Isoamyl-6-methylpyrazine
Pyrazine, 2-ethyl-methyl-
Pyridine A B C D E F G H I J
Pyridine
2-Pyridinecarboxylic acid
2-Pyridinecarboxaldehyde
Picolinamide
Fampridine
3-Pyridinol
4-Pyridinamine, N,N-dimethyl-
4(H)-Pyridine, N-acetyl-
1,2-Ethanediol, 1,2-di-pyridinyl-
2-Aminopyridine
3-Aminopyridine
3-Hydroxypyridine monoacetate
2-Pyridylhydroxymethanesulfonic acid
Pyrroles A B C D E F G H I J
1H-Pyrrole-2-carboxaldehyde, 1-methyl-
Ethanone, 1-(1H-pyrrol-2-yl)
1H-Pyrrole-2-carboxaldehyde
Indole
1H-Pyrrole, 1-(2-furanylmethyl)-
2-Pyrrolidinone, 1-butyl-
Pyrrole
1H-Indole, 3-methyl-
Others** A B C D E F G H I J
2-Thiophenemethanol
Diacetylsulphide
Caffeine
Cyclobutanol
Acetamide, N-(3-methyl-2-oxobutyl)-
*Treatments: Spontaneous fermentation (A); B. subtilis CCMA1234 (B); B. pumilus CCMA1251 (C); C. cellulans
CCMA1186 (D); P. dispersa CCMA1203 (E); M. testaceum CCMA1151 (F); Leu. mesenteroides CCMA1082 (G); Leu.
mesenteroides CCMA1105 (H); Lac plantarum CCMA1065 (I); Lac. plantarum CCMA1072 (J). Capital letters without
number: the beginning of fermentation; Capital letters with subscript number: end of fermentation **Included: Alkaloids,
sulfur compounds, alcohols, and amines.
*
Treatments: Spontaneous fermentation (A); B. subtilis CCMA1234 (B); B. pumilus CCMA1251 (C); C.
cellulans CCMA1186 (D); P. dispersa CCMA1203 (E); M. testaceum CCMA1151 (F); Leu. mesenter-
oides CCMA1082 (G); Leu. mesenteroides CCMA1105 (H); Lac plantarum CCMA1065 (I); Lac. plan-
tarum CCMA1072 (J). Capital letters without number: the beginning of fermentation; Capital letters with
subscript number: end of fermentation **Included: Alkaloids, sulfur compounds, alcohols, and amines
These acids, such as acetic and succinic in high concentra- heterofermentative LAB (Swiegers et al. 2005), and yeast
tions (more significant than one mg mL−1), create negative (Martinez et al. 2017; Bressani et al. 2019). Stains of Bacil-
deterioration factors in coffee (onion flavor) and interfere lus subtilis and Pantoea dispersa were used as bacteria start-
in a deprecatory way in the final quality of the beverage ers in Martinez et al. (2019), showing that they produced
(Lopez et al. 1989). However, these acids were described succinic acid during wet fermentation. Wang et al. (2019b)
in the present study; they were detected in concentrations reported that this acid could remain higher even during cof-
below mg g −1. The variation of acids during fermenta- fee roasting.
tion due to microbial metabolism changed the pH value Lactic acid was the acid detected in the highest concentra-
and influenced the microbiota present, and the diffusion tion in coffee-based fermentation (Supplementary Material)
of these acids into the bean could affect the final bever- and bucket fermentation (Fig. 4) with the selected bacte-
age flavor and quality (Silva et al. 2013; Evangelista et al. ria. Evangelista et al. (2015) also found that lactic acid was
2014; Silva 2015). the primary acid detected in wet coffee fermentations. The
The succinic acid was detected in some fermentation high concentration of lactic acid produced by the LAB and
carried out in this study using the coffee-based medium. the consequent lowering of pH would cause the dissocia-
Succinic acid is obtained naturally during coffee process- tion of the bean mucilage. The high production of citric,
ing and contributes to the final product (Bressani et al. succinic, and lactic acids, and the low production of acetic
2019; Wang et al. 2019b; Avallone et al. 2001). This acid and propionic acids in a coffee pulp medium were used as
may be produced by Bacillus spp. (Silva et al. 2013), by selection factors to determine the strains most suitable for
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conducting the wet coffee fermentation. According to Mar- coffee. Future work should be conducted to evaluate these
tinez et al. (2019), lactic, acetic citric, and succinic acids strains in different coffee varieties and the sensory profiles
were produced when they inoculated bacteria of the genus produced.
Bacillus and Pantoea during wet fermentation. According
to Pothakos et al. (2020), LAB showed to be dominant and Acknowledgements The authors thank the Brazilian agencies, Con-
selho Nacional de Desenvolvimento Científico e Tecnológico do Brasil
very important during coffee processing, from green coffee (CNPQ), Fundação de Amparo à Pesquisa do Estado de Minas Gerais
beans to coffee cupping. (FAPEMIG) and Coordenação de Aperfeiçoamento de Pessoal de Nível
Acids, alcohols, aldehydes, ketones, esters, hydrocarbons, Superior (CAPES) for financial support. We also thank Daterra farm,
and other compounds (phenols, alkanes, and alkaloids) were Patrocínio, Minas Gerais, Brazil, for collecting the samples.
classified in the study (Tables 3, 4). The volatile compounds
predominantly found in initial fermentation belong to alco- Compliance with ethical standards
hols, aldehydes, and ketones. These compounds are pro-
Conflict of interest The authors declared that there is no conflict of
duced during coffee processing due to the pectin and sugars interest.
degeneration, resulting in a decrease in pH (De Bruyn et al.
2017).
The presence of crucial flavor marker phenethyl alcohol
before inoculation in this study indicates that it might have References
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