DJ1 DJ2 DJ3 DJ4 DJ5 DC1 DC2 DC3 DC4 DC5 DM1 DM2 DM3 DM4 DM5

DM1 DM2 DM3 DM4 DM5 O. aries

DJ1 -
DJ2 -
DJ3 -
DJ4 -
DJ5 -
DC1 -
DC2 -
DC3 -
DC4 -
DC5 -
DM1 -
DM2 -
DM3 -
DM4 -
DM5 -
O. aries -
Bawah diagonal  Hd

Atas diagonal (Green)  pi

Ini dari DNASP (TOLONGGG MASUKKIN DEWE, AKU WES LELAH)

Input Data File: D:\...\alignment DJ, DC, DM, Oaries.meg

Number of Populations Included: 115

Selected region: 1-1231 Number of sites: 1231

Sites with alignment gaps are: Excluded

Total sites (excluding alignment gaps): 425

Population 1: J2_J1

Number of sequences: 2

Number of segregating sites, S: 2

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 2.00000

Nucleotide diversity, Pi: 0.00471

Nucleotide diversity with JC, PiJC: 0.00472

Population 2: J3_J1

Number of sequences: 2

Number of segregating sites, S: 2

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 2.00000

Nucleotide diversity, Pi: 0.00471

Nucleotide diversity with JC, PiJC: 0.00472

Population 3: J3_J2

Number of sequences: 2

Number of segregating sites, S: 0

Number of haplotypes, h: 1

Haplotype diversity, Hd: 0.00000

 Average number of differences, K: 0.00000

Nucleotide diversity, Pi: 0.00000

Nucleotide diversity with JC, PiJC: 0.00000

Population 4: J4_J1

Number of sequences: 2

Number of segregating sites, S: 28

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 28.00000

Nucleotide diversity, Pi: 0.06588

Nucleotide diversity with JC, PiJC: 0.06896

Population 5: J4_J2

Number of sequences: 2

Number of segregating sites, S: 28

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 28.00000

Nucleotide diversity, Pi: 0.06588

Nucleotide diversity with JC, PiJC: 0.06896

Population 6: J4_J3

Number of sequences: 2

Number of segregating sites, S: 28

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 28.00000

Nucleotide diversity, Pi: 0.06588

Nucleotide diversity with JC, PiJC: 0.06896

Population 7: J5_J1

Number of sequences: 2

Number of segregating sites, S: 5

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 5.00000

Nucleotide diversity, Pi: 0.01176

Nucleotide diversity with JC, PiJC: 0.01186

Population 8: J5_J2

Number of sequences: 2

Number of segregating sites, S: 5

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 5.00000

Nucleotide diversity, Pi: 0.01176

Nucleotide diversity with JC, PiJC: 0.01186

Population 9: J5_J3

Number of sequences: 2

Number of segregating sites, S: 5

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 5.00000

Nucleotide diversity, Pi: 0.01176

Nucleotide diversity with JC, PiJC: 0.01186

Population 10: J5_J4

Number of sequences: 2

Number of segregating sites, S: 31

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 31.00000

Nucleotide diversity, Pi: 0.07294

Nucleotide diversity with JC, PiJC: 0.07674

Population 11: C1_J1

Number of sequences: 2

Number of segregating sites, S: 2

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 2.00000

Nucleotide diversity, Pi: 0.00471

Nucleotide diversity with JC, PiJC: 0.00472

Population 12: C1_J2

Number of sequences: 2

Number of segregating sites, S: 0

Number of haplotypes, h: 1

Haplotype diversity, Hd: 0.00000

Average number of differences, K: 0.00000

Nucleotide diversity, Pi: 0.00000

Nucleotide diversity with JC, PiJC: 0.00000

Population 13: C1_J3

Number of sequences: 2

Number of segregating sites, S: 0

Number of haplotypes, h: 1

Haplotype diversity, Hd: 0.00000

 Average number of differences, K: 0.00000

Nucleotide diversity, Pi: 0.00000

Nucleotide diversity with JC, PiJC: 0.00000

Population 14: C1_J4

Number of sequences: 2

Number of segregating sites, S: 28

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 28.00000

Nucleotide diversity, Pi: 0.06588

Nucleotide diversity with JC, PiJC: 0.06896

Population 15: C1_J5

Number of sequences: 2

Number of segregating sites, S: 5

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 5.00000

Nucleotide diversity, Pi: 0.01176

Nucleotide diversity with JC, PiJC: 0.01186

Population 16: C2_J1

Number of sequences: 2

Number of segregating sites, S: 1

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 1.00000

Nucleotide diversity, Pi: 0.00235

Nucleotide diversity with JC, PiJC: 0.00236

Population 17: C2_J2

Number of sequences: 2

Number of segregating sites, S: 1

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 1.00000

Nucleotide diversity, Pi: 0.00235

Nucleotide diversity with JC, PiJC: 0.00236

Population 18: C2_J3

Number of sequences: 2

Number of segregating sites, S: 1

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 1.00000

Nucleotide diversity, Pi: 0.00235

Nucleotide diversity with JC, PiJC: 0.00236

Population 19: C2_J4

Number of sequences: 2

Number of segregating sites, S: 29

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 29.00000

Nucleotide diversity, Pi: 0.06824

Nucleotide diversity with JC, PiJC: 0.07154

Population 20: C2_J5

Number of sequences: 2

Number of segregating sites, S: 4

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 4.00000

Nucleotide diversity, Pi: 0.00941

Nucleotide diversity with JC, PiJC: 0.00947

Population 21: C2_C1

Number of sequences: 2

Number of segregating sites, S: 1

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 1.00000

Nucleotide diversity, Pi: 0.00235

Nucleotide diversity with JC, PiJC: 0.00236

Population 22: C3_J1

Number of sequences: 2

Number of segregating sites, S: 2

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 2.00000

Nucleotide diversity, Pi: 0.00471

Nucleotide diversity with JC, PiJC: 0.00472

Population 23: C3_J2

Number of sequences: 2

Number of segregating sites, S: 0

Number of haplotypes, h: 1

Haplotype diversity, Hd: 0.00000

 Average number of differences, K: 0.00000

Nucleotide diversity, Pi: 0.00000

Nucleotide diversity with JC, PiJC: 0.00000

Population 24: C3_J3

Number of sequences: 2

Number of segregating sites, S: 0

Number of haplotypes, h: 1

Haplotype diversity, Hd: 0.00000

Average number of differences, K: 0.00000

Nucleotide diversity, Pi: 0.00000

Nucleotide diversity with JC, PiJC: 0.00000

Population 25: C3_J4

Number of sequences: 2

Number of segregating sites, S: 28

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 28.00000

Nucleotide diversity, Pi: 0.06588

Nucleotide diversity with JC, PiJC: 0.06896

Population 26: C3_J5

Number of sequences: 2

Number of segregating sites, S: 5

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 5.00000

Nucleotide diversity, Pi: 0.01176

Nucleotide diversity with JC, PiJC: 0.01186

Population 27: C3_C1

Number of sequences: 2

Number of segregating sites, S: 0

Number of haplotypes, h: 1

Haplotype diversity, Hd: 0.00000

 Average number of differences, K: 0.00000

Nucleotide diversity, Pi: 0.00000

Nucleotide diversity with JC, PiJC: 0.00000

Population 28: C3_C2

Number of sequences: 2

Number of segregating sites, S: 1

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 1.00000

Nucleotide diversity, Pi: 0.00235

Nucleotide diversity with JC, PiJC: 0.00236

Population 29: C4_J1

Number of sequences: 2

Number of segregating sites, S: 18

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 18.00000

Nucleotide diversity, Pi: 0.04235

Nucleotide diversity with JC, PiJC: 0.04360

Population 30: C4_J2

Number of sequences: 2

Number of segregating sites, S: 18

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 18.00000

Nucleotide diversity, Pi: 0.04235

Nucleotide diversity with JC, PiJC: 0.04360

Population 31: C4_J3

Number of sequences: 2

Number of segregating sites, S: 18

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 18.00000

Nucleotide diversity, Pi: 0.04235

Nucleotide diversity with JC, PiJC: 0.04360

Population 32: C4_J4

Number of sequences: 2

Number of segregating sites, S: 42

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 42.00000

Nucleotide diversity, Pi: 0.09882

Nucleotide diversity with JC, PiJC: 0.10597

Population 33: C4_J5

Number of sequences: 2

Number of segregating sites, S: 17

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 17.00000

Nucleotide diversity, Pi: 0.04000

Nucleotide diversity with JC, PiJC: 0.04111

Population 34: C4_C1

Number of sequences: 2

Number of segregating sites, S: 18

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 18.00000

Nucleotide diversity, Pi: 0.04235

Nucleotide diversity with JC, PiJC: 0.04360

Population 35: C4_C2

Number of sequences: 2

Number of segregating sites, S: 17

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 17.00000

Nucleotide diversity, Pi: 0.04000

Nucleotide diversity with JC, PiJC: 0.04111

Population 36: C4_C3

Number of sequences: 2

Number of segregating sites, S: 18

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 18.00000

Nucleotide diversity, Pi: 0.04235

Nucleotide diversity with JC, PiJC: 0.04360

Population 37: C5_J1

Number of sequences: 2

Number of segregating sites, S: 26

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 26.00000

Nucleotide diversity, Pi: 0.06118

Nucleotide diversity with JC, PiJC: 0.06382

Population 38: C5_J2

Number of sequences: 2

Number of segregating sites, S: 24

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 24.00000

Nucleotide diversity, Pi: 0.05647

Nucleotide diversity with JC, PiJC: 0.05871

Population 39: C5_J3

Number of sequences: 2

Number of segregating sites, S: 24

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 24.00000

Nucleotide diversity, Pi: 0.05647

Nucleotide diversity with JC, PiJC: 0.05871

Population 40: C5_J4

Number of sequences: 2

Number of segregating sites, S: 4

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 4.00000

Nucleotide diversity, Pi: 0.00941

Nucleotide diversity with JC, PiJC: 0.00947

Population 41: C5_J5

Number of sequences: 2

Number of segregating sites, S: 27

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 27.00000

Nucleotide diversity, Pi: 0.06353

Nucleotide diversity with JC, PiJC: 0.06638

Population 42: C5_C1

Number of sequences: 2

Number of segregating sites, S: 24

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 24.00000

Nucleotide diversity, Pi: 0.05647

Nucleotide diversity with JC, PiJC: 0.05871

Population 43: C5_C2

Number of sequences: 2

Number of segregating sites, S: 25

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 25.00000

Nucleotide diversity, Pi: 0.05882

Nucleotide diversity with JC, PiJC: 0.06126

Population 44: C5_C3

Number of sequences: 2

Number of segregating sites, S: 24

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 24.00000

Nucleotide diversity, Pi: 0.05647

Nucleotide diversity with JC, PiJC: 0.05871

Population 45: C5_C4

Number of sequences: 2

Number of segregating sites, S: 38

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 38.00000

Nucleotide diversity, Pi: 0.08941

Nucleotide diversity with JC, PiJC: 0.09521

Population 46: M1_J1

Number of sequences: 2

Number of segregating sites, S: 26

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 26.00000

Nucleotide diversity, Pi: 0.06118

Nucleotide diversity with JC, PiJC: 0.06382

Population 47: M1_J2

Number of sequences: 2

Number of segregating sites, S: 24

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 24.00000

Nucleotide diversity, Pi: 0.05647

Nucleotide diversity with JC, PiJC: 0.05871

Population 48: M1_J3

Number of sequences: 2

Number of segregating sites, S: 24

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 24.00000

Nucleotide diversity, Pi: 0.05647

Nucleotide diversity with JC, PiJC: 0.05871

Population 49: M1_J4

Number of sequences: 2

Number of segregating sites, S: 10

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 10.00000

Nucleotide diversity, Pi: 0.02353

Nucleotide diversity with JC, PiJC: 0.02391

Population 50: M1_J5

Number of sequences: 2

Number of segregating sites, S: 27

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 27.00000

Nucleotide diversity, Pi: 0.06353

Nucleotide diversity with JC, PiJC: 0.06638

Population 51: M1_C1

Number of sequences: 2

Number of segregating sites, S: 24

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 24.00000

Nucleotide diversity, Pi: 0.05647

Nucleotide diversity with JC, PiJC: 0.05871

Population 52: M1_C2

Number of sequences: 2

Number of segregating sites, S: 25

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 25.00000

Nucleotide diversity, Pi: 0.05882

Nucleotide diversity with JC, PiJC: 0.06126

Population 53: M1_C3

Number of sequences: 2

Number of segregating sites, S: 24

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 24.00000

Nucleotide diversity, Pi: 0.05647

Nucleotide diversity with JC, PiJC: 0.05871

Population 54: M1_C4

Number of sequences: 2

Number of segregating sites, S: 37

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 37.00000

Nucleotide diversity, Pi: 0.08706

Nucleotide diversity with JC, PiJC: 0.09254

Population 55: M1_C5

Number of sequences: 2

Number of segregating sites, S: 8

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 8.00000

Nucleotide diversity, Pi: 0.01882

Nucleotide diversity with JC, PiJC: 0.01906

Population 56: M2_J1

Number of sequences: 2

Number of segregating sites, S: 29

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 29.00000

Nucleotide diversity, Pi: 0.06824

Nucleotide diversity with JC, PiJC: 0.07154

Population 57: M2_J2

Number of sequences: 2

Number of segregating sites, S: 29

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 29.00000

Nucleotide diversity, Pi: 0.06824

Nucleotide diversity with JC, PiJC: 0.07154

Population 58: M2_J3

Number of sequences: 2

Number of segregating sites, S: 29

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 29.00000

Nucleotide diversity, Pi: 0.06824

Nucleotide diversity with JC, PiJC: 0.07154

Population 59: M2_J4

Number of sequences: 2

Number of segregating sites, S: 11

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 11.00000

Nucleotide diversity, Pi: 0.02588

Nucleotide diversity with JC, PiJC: 0.02634

Population 60: M2_J5

Number of sequences: 2

Number of segregating sites, S: 32

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 32.00000

Nucleotide diversity, Pi: 0.07529

Nucleotide diversity with JC, PiJC: 0.07935

Population 61: M2_C1

Number of sequences: 2

Number of segregating sites, S: 29

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 29.00000

Nucleotide diversity, Pi: 0.06824

Nucleotide diversity with JC, PiJC: 0.07154

Population 62: M2_C2

Number of sequences: 2

Number of segregating sites, S: 30

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 30.00000

Nucleotide diversity, Pi: 0.07059

Nucleotide diversity with JC, PiJC: 0.07413

Population 63: M2_C3

Number of sequences: 2

Number of segregating sites, S: 29

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 29.00000

Nucleotide diversity, Pi: 0.06824

Nucleotide diversity with JC, PiJC: 0.07154

Population 64: M2_C4

Number of sequences: 2

Number of segregating sites, S: 42

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 42.00000

Nucleotide diversity, Pi: 0.09882

Nucleotide diversity with JC, PiJC: 0.10597

Population 65: M2_C5

Number of sequences: 2

Number of segregating sites, S: 13

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 13.00000

Nucleotide diversity, Pi: 0.03059

Nucleotide diversity with JC, PiJC: 0.03123

Population 66: M2_M1

Number of sequences: 2

Number of segregating sites, S: 5

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 5.00000

Nucleotide diversity, Pi: 0.01176

Nucleotide diversity with JC, PiJC: 0.01186

Population 67: M3_J1

Number of sequences: 2

Number of segregating sites, S: 6

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 6.00000

Nucleotide diversity, Pi: 0.01412

Nucleotide diversity with JC, PiJC: 0.01425

Population 68: M3_J2

Number of sequences: 2

Number of segregating sites, S: 4

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 4.00000

Nucleotide diversity, Pi: 0.00941

Nucleotide diversity with JC, PiJC: 0.00947

Population 69: M3_J3

Number of sequences: 2

Number of segregating sites, S: 4

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 4.00000

Nucleotide diversity, Pi: 0.00941

Nucleotide diversity with JC, PiJC: 0.00947

Population 70: M3_J4

Number of sequences: 2

Number of segregating sites, S: 30

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 30.00000

Nucleotide diversity, Pi: 0.07059

Nucleotide diversity with JC, PiJC: 0.07413

Population 71: M3_J5

Number of sequences: 2

Number of segregating sites, S: 8

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 8.00000

Nucleotide diversity, Pi: 0.01882

Nucleotide diversity with JC, PiJC: 0.01906

Population 72: M3_C1

Number of sequences: 2

Number of segregating sites, S: 4

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 4.00000

Nucleotide diversity, Pi: 0.00941

Nucleotide diversity with JC, PiJC: 0.00947

Population 73: M3_C2

Number of sequences: 2

Number of segregating sites, S: 5

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 5.00000

Nucleotide diversity, Pi: 0.01176

Nucleotide diversity with JC, PiJC: 0.01186

Population 74: M3_C3

Number of sequences: 2

Number of segregating sites, S: 4

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 4.00000

Nucleotide diversity, Pi: 0.00941

Nucleotide diversity with JC, PiJC: 0.00947

Population 75: M3_C4

Number of sequences: 2

Number of segregating sites, S: 22

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 22.00000

Nucleotide diversity, Pi: 0.05176

Nucleotide diversity with JC, PiJC: 0.05364

Population 76: M3_C5

Number of sequences: 2

Number of segregating sites, S: 26

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 26.00000

Nucleotide diversity, Pi: 0.06118

Nucleotide diversity with JC, PiJC: 0.06382

Population 77: M3_M1

Number of sequences: 2

Number of segregating sites, S: 26

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 26.00000

Nucleotide diversity, Pi: 0.06118

Nucleotide diversity with JC, PiJC: 0.06382

Population 78: M3_M2

Number of sequences: 2

Number of segregating sites, S: 31

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 31.00000

Nucleotide diversity, Pi: 0.07294

Nucleotide diversity with JC, PiJC: 0.07674

Population 79: M4_J1

Number of sequences: 2

Number of segregating sites, S: 235

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 235.00000

Nucleotide diversity, Pi: 0.55294

Nucleotide diversity with JC, PiJC: 1.00243

Population 80: M4_J2

Number of sequences: 2

Number of segregating sites, S: 234

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 234.00000

Nucleotide diversity, Pi: 0.55059

Nucleotide diversity with JC, PiJC: 0.99353

Population 81: M4_J3

Number of sequences: 2

Number of segregating sites, S: 234

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 234.00000

Nucleotide diversity, Pi: 0.55059

Nucleotide diversity with JC, PiJC: 0.99353

Population 82: M4_J4

Number of sequences: 2

Number of segregating sites, S: 228

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 228.00000

Nucleotide diversity, Pi: 0.53647

Nucleotide diversity with JC, PiJC: 0.94222

Population 83: M4_J5

Number of sequences: 2

Number of segregating sites, S: 234

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 234.00000

Nucleotide diversity, Pi: 0.55059

Nucleotide diversity with JC, PiJC: 0.99353

Population 84: M4_M1

Number of sequences: 2

Number of segregating sites, S: 227

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 227.00000

Nucleotide diversity, Pi: 0.53412

Nucleotide diversity with JC, PiJC: 0.93400

Population 85: M4_M2

Number of sequences: 2

Number of segregating sites, S: 229

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 229.00000

Nucleotide diversity, Pi: 0.53882

Nucleotide diversity with JC, PiJC: 0.95053

Population 86: M4_M3

Number of sequences: 2

Number of segregating sites, S: 232

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 232.00000

Nucleotide diversity, Pi: 0.54588

Nucleotide diversity with JC, PiJC: 0.97603

Population 87: M5_J1

Number of sequences: 2

Number of segregating sites, S: 261

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 261.00000

Nucleotide diversity, Pi: 0.61412

Nucleotide diversity with JC, PiJC: 1.28121

Population 88: M5_J2

Number of sequences: 2

Number of segregating sites, S: 261

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 261.00000

Nucleotide diversity, Pi: 0.61412

Nucleotide diversity with JC, PiJC: 1.28121

Population 89: M5_J3

Number of sequences: 2

Number of segregating sites, S: 261

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 261.00000

Nucleotide diversity, Pi: 0.61412

Nucleotide diversity with JC, PiJC: 1.28121

Population 90: M5_J4

Number of sequences: 2

Number of segregating sites, S: 257

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 257.00000

Nucleotide diversity, Pi: 0.60471

Nucleotide diversity with JC, PiJC: 1.23098

Population 91: M5_J5

Number of sequences: 2

Number of segregating sites, S: 263

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 263.00000

Nucleotide diversity, Pi: 0.61882

Nucleotide diversity with JC, PiJC: 1.30765

Population 92: M5_C1

Number of sequences: 2

Number of segregating sites, S: 261

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 261.00000

Nucleotide diversity, Pi: 0.61412

Nucleotide diversity with JC, PiJC: 1.28121

Population 93: M5_C2

Number of sequences: 2

Number of segregating sites, S: 262

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 262.00000

Nucleotide diversity, Pi: 0.61647

Nucleotide diversity with JC, PiJC: 1.29431

Population 94: M5_C3

Number of sequences: 2

Number of segregating sites, S: 261

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 261.00000

Nucleotide diversity, Pi: 0.61412

Nucleotide diversity with JC, PiJC: 1.28121

Population 95: M5_C4

Number of sequences: 2

Number of segregating sites, S: 260

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 260.00000

Nucleotide diversity, Pi: 0.61176

Nucleotide diversity with JC, PiJC: 1.26834

Population 96: M5_C5

Number of sequences: 2

Number of segregating sites, S: 257

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 257.00000

Nucleotide diversity, Pi: 0.60471

Nucleotide diversity with JC, PiJC: 1.23098

Population 97: M5_M1

Number of sequences: 2

Number of segregating sites, S: 258

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 258.00000

Nucleotide diversity, Pi: 0.60706

Nucleotide diversity with JC, PiJC: 1.24323

Population 98: M5_M2

Number of sequences: 2

Number of segregating sites, S: 257

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 257.00000

Nucleotide diversity, Pi: 0.60471

Nucleotide diversity with JC, PiJC: 1.23098

Population 99: M5_M3

Number of sequences: 2

Number of segregating sites, S: 259

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 259.00000

Nucleotide diversity, Pi: 0.60941

Nucleotide diversity with JC, PiJC: 1.25568

Population 100: M5_M4

Number of sequences: 2

Number of segregating sites, S: 84

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 84.00000

Nucleotide diversity, Pi: 0.19765

Nucleotide diversity with JC, PiJC: 0.22941

Population 101: OA_J1

Number of sequences: 2

Number of segregating sites, S: 31

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 31.00000

Nucleotide diversity, Pi: 0.07294

Nucleotide diversity with JC, PiJC: 0.07674

Population 102: OA_J2

Number of sequences: 2

Number of segregating sites, S: 31

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 31.00000

Nucleotide diversity, Pi: 0.07294

Nucleotide diversity with JC, PiJC: 0.07674

Population 103: OA_J3

Number of sequences: 2

Number of segregating sites, S: 31

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 31.00000

Nucleotide diversity, Pi: 0.07294

Nucleotide diversity with JC, PiJC: 0.07674

Population 104: OA_J4

Number of sequences: 2

Number of segregating sites, S: 11

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 11.00000

Nucleotide diversity, Pi: 0.02588

Nucleotide diversity with JC, PiJC: 0.02634

Population 105: OA_J5

Number of sequences: 2

Number of segregating sites, S: 31

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 31.00000

Nucleotide diversity, Pi: 0.07294

Nucleotide diversity with JC, PiJC: 0.07674

Population 106: OA_C1

Number of sequences: 2

Number of segregating sites, S: 31

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 31.00000

Nucleotide diversity, Pi: 0.07294

Nucleotide diversity with JC, PiJC: 0.07674

Population 107: OA_C2

Number of sequences: 2

Number of segregating sites, S: 32

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 32.00000

Nucleotide diversity, Pi: 0.07529

Nucleotide diversity with JC, PiJC: 0.07935

Population 108: OA_C3

Number of sequences: 2

Number of segregating sites, S: 31

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 31.00000

Nucleotide diversity, Pi: 0.07294

Nucleotide diversity with JC, PiJC: 0.07674

Population 109: OA_C4

Number of sequences: 2

Number of segregating sites, S: 43

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 43.00000

Nucleotide diversity, Pi: 0.10118

Nucleotide diversity with JC, PiJC: 0.10868

Population 110: OA_C5

Number of sequences: 2

Number of segregating sites, S: 11

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 11.00000

Nucleotide diversity, Pi: 0.02588

Nucleotide diversity with JC, PiJC: 0.02634

Population 111: OA_M1

Number of sequences: 2

Number of segregating sites, S: 11

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 11.00000

Nucleotide diversity, Pi: 0.02588

Nucleotide diversity with JC, PiJC: 0.02634

Population 112: OA_M2

Number of sequences: 2

Number of segregating sites, S: 12

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 12.00000

Nucleotide diversity, Pi: 0.02824

Nucleotide diversity with JC, PiJC: 0.02878

Population 113: OA_M3

Number of sequences: 2

Number of segregating sites, S: 33

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 33.00000

Nucleotide diversity, Pi: 0.07765

Nucleotide diversity with JC, PiJC: 0.08197

Population 114: OA_M4

Number of sequences: 2

Number of segregating sites, S: 230

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

Average number of differences, K: 230.00000

Nucleotide diversity, Pi: 0.54118

Nucleotide diversity with JC, PiJC: 0.95894

Population 115: OA_M5

Number of sequences: 2

Number of segregating sites, S: 259

Number of haplotypes, h: 2

Haplotype diversity, Hd: 1.00000

 Average number of differences, K: 259.00000

Nucleotide diversity, Pi: 0.60941

Nucleotide diversity with JC, PiJC: 1.25568

Total Data Estimates

Number of sequences: 230

Number of segregating sites, S: 295

Number of haplotypes, h: 13

Haplotype diversity, Hd: 0.89326

Average number of nucleotide differences, Kt: 62.22426

Nucleotide diversity, PiT: 0.14641

=========== Genetic Differentiation Estimates ==========

Chi-square (table), Chi2: 1288.793 P-value of Chi2: 0.9372 ns; (df = 1368)

HBK 1992, Hs: 0.00000 Hst: 1.00000

PM test; P-value of Hs, Hst: 1.0000 ns

HBK 1992, Ks: 64.73043 Kst: -0.04028

PM test; P-value of Ks, Kst: 0.7240 ns

HBK 1992, Ks*: 0.00000 Kst*: 1.00000

PM test; P-value of Ks*, Kst*: 1.0000 ns

HBK 1992, Z: 0.00000

PM test; P-value of Z: 1.0000 ns

HBK 1992, Z*: 0.00000

PM test; P-value of Z*: 1.0000 ns

Hudson 2000, Snn: 0.00092

PM test; P-value of Snn: 0.9970 ns

PM test; Probability obtained by the permutation test with 1000 replicates)

ns, not significant; *, 0.01<P<0.05; **, 0.001<P<0.01; ***, P<0.001

=========== Gene Flow Estimates ===========

Genome: Diploid-Autosome

Haplotype Data Information

Nei 1973

Gst: -0.06080 Nm: -4.36

Sequence Data Information

Nei 1982

DeltaSt: 0.06962 GammaSt: 0.47759 Nm: 0.27

Lynch and Crease 1990 (with Jukes and Cantor correction)

Nst: -0.03665 Nm: -7.07

Hudson, Slatkin and Maddison 1992

Fst: -0.04046 Nm: -6.43