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Analysis of variance is a collection of statistical models and their associated estimation procedures
used to analyze the differences among means. ANOVA was developed by the statistician Ronald
Fisher.
ANOVA is also called the Fisher analysis of variance, and it is the extension of
the t- and z-tests. The term became well-known in 1925, after appearing in Fisher's
book, "Statistical Methods for Research Workers."
It was employed in experimental psychology and later expanded to subjects that
were more complex.
KEY TAKEAWAYS
F=MSE/MSTwhere:
F=ANOVA coefficient
MST=Mean sum of squares due to treatment
MSE=Mean sum of squares due to error
The ANOVA test allows a comparison of more than two groups at the same
time to determine whether a relationship exists between them. The result of
the ANOVA formula, the F statistic (also called the F-ratio), allows for the
analysis of multiple groups of data to determine the variability between
samples and within samples.
If no real difference exists between the tested groups, which is called the null
hypothesis, the result of the ANOVA's F-ratio statistic will be close to 1. The
distribution of all possible values of the F statistic is the F-distribution. This is
actually a group of distribution functions, with two characteristic numbers,
called the numerator degrees of freedom and the denominator degrees of
freedom.
ANOVA tells you if the dependent variable changes according to the level of the
independent variable. For example:
Your independent variable is social media use, and you assign groups
to low, medium, and high levels of social media use to find out if there is a
difference in hours of sleep per night.
Your independent variable is brand of soda, and you collect data
on Coke, Pepsi, Sprite, and Fanta to find out if there is a difference in the price
per 100ml.
You independent variable is type of fertilizer, and you treat crop fields with
mixtures 1, 2 and 3 to find out if there is a difference in crop yield.
If any of the group means is significantly different from the overall mean, then the null
hypothesis is rejected.
ANOVA uses the F-test for statistical significance. This allows for comparison of multiple
means at once, because the error is calculated for the whole set of comparisons rather
than for each individual two-way comparison (which would happen with a t-test).
The F-test compares the variance in each group mean from the overall group variance.
If the variance within groups is smaller than the variance between groups, the F-test will
find a higher F-value, and therefore a higher likelihood that the difference observed is
real and not due to chance.
ssumptions of ANOVA
The assumptions of the ANOVA test are the same as the general assumptions for any
parametric test:
The sample dataset from our imaginary crop yield experiment contains data about:
This gives us enough information to run various different ANOVA tests and see which
model is the best fit for the data.
For the one-way ANOVA, we will only analyze the effect of fertilizer type on crop yield.
After loading the dataset into our R environment, we can use the command aov() to run
an ANOVA. In this example we will model the differences in the mean of the response
variable, crop yield, as a function of type of fertilizer.
The ANOVA output provides an estimate of how much variation in the dependent
variable that can be explained by the independent variable.
Because the p-value of the independent variable, fertilizer, is significant (p < 0.05), it is
likely that fertilizer type does have a significant effect on average crop yield.