Professional Documents
Culture Documents
MICROBIOLOGY
BY
USMAN, A O. (MRS) & ISIAKU,
H, Y (MR.)
I
DEDICATION
PREFACE
II
This book “Introduction to Microbiology” is a work of expert
microbiologists with vast experiences and dynamic skills in the
teaching of microbiology who aimed at assisting students of
microbiology in colleges, polytechnics and universities in
broadening their knowledge of microbiology. This book
contains all the basic knowledge that students need to have
about microbiology
ACKNOWLEDGMENT
III
Our utmost and profound gratitude goes to Allah for His grace
and mercy on us for giving us the strength and wisdom to write
this book.
Our deepest gratitude goes to all our colleagues and all the staff
and also to a large number of students whose interests,
criticisms, perpetual questions and encouragement have made
this book possible. We are also grateful to all our friends too
numerous to mention.
FORWARD
IV
This book; “Introductory Microbiology” has been put together
by a seasoned and experienced biology and microbiology
lecturers. The book will serve as a quick reference for all
students of biology, microbiology, parasitology, zoology,
science laboratory technology and any student taking a course
in microbiology and physiology. The field of microbiology is
quite vast and this book has managed to present all the main
principles in a summarized and concise form. It presents the
fundamentals of microbiology in a manner comprehensible to
students with a minimal background in microbiology. It is my
sincere hope that this book will be interesting and valuable to
all students and teachers of microbiology. The authors
welcome your comments and suggestions.
Usman, K.M.
Senior Lecturer
Department of Biological Sciences
Federal Polytechnic, Offa,
Offa, Kwara State
TABLE OF CONTENT
V
Title page i
Dedication ii
Preface
iii
Acknowledgment iv
Forward v
Table of content vi
CHAPTER ONE
1.0 History and scope of microbiology 1
1.1 Scope of microbiology 1
1.2 Branches of microbiology 1
1.3 Development of microscope and microbiology 1
1.4 The scientists involved in the development of
microscope and microbiology 2
1.5 The role of microbiology 4
CHAPTER TWO
2.0 Principle of microscopy 8
2.1 Types of microscope 8
2.2 Microbial staining techniques 13
2.2.1 Gram’s staining 14
2.2.2 Spore staining
15
2.2.3 Flagella staining 15
2.3 Prokaryotic and eukaryotic cells 16
CHAPTER THREE
3.0 Systemic microbiology 18
3.1 Characteristics of microorganism 18
3.2 Morphological characteristics 19
3.3 Biochemical characteristics of classifying
microorganisms 21
CHAPTER FOUR
4.0 Growth of microorganisms 22
4.1 Factors influencing microbial growth 22
4.2 Microbial growth 25
VI
CHAPTER FIVE
5.0 Isolation, cultivation and preservation of
microorganisms 28
5.1 Culture media 28
5.2 Preparation of culture media 31
5.3 Sterilization of culture media 32
5.4 Types of culture 33
5.5 Isolation of pure culture 33
5.6 Maintenance of pure culture 35
CHAPTER SIX
6.0 Control of microorganisms 37
6.1 Reasons for controlling microorganisms 37
6.2 Terminologies used in controlling microorganism 37
6.3 Types of sterilization and disinfection 39
References 40
VII
CHAPTER ONE
1
of viewing," from skopein "look at." Microscopic "of minute
size"
2
1590: Two Dutch spectacle-makers and father-and-son
team, Hans and Zacharias Janssen, create the first
microscope.
3
1981: 3-D specimen images possible with the invention of the
scanning tunneling microscope by Gerd Binnig and Heinrich
Rohrer.
INDUSTRIES
5
Yoghurt: is usually made from milk through that action of a
bacterium known as Lactobacillus acidophilus. L. acidophilus
produced lactic acid which sweeten the yoghurt.
MEDICINE
Microorganisms have been seen to be involved in the various
stages in the production and processing of drugs. Some
microorganisms are used in the manufacture of hormones. For
instance, progesterone is converted to cortisone through the
action of a fungus Aspergillus spp. The blue mould Penicilium
notatum commonly seen on decaying citrus fruits produces
antibiotics penicillin which was initially regarded as ‘magic’
drug.
AGRICULTURE
The role of microbiology tends to command attention of
specialists. Among the branches of microbiology is plant
pathology, which deals with the studies of the causatives of
disease to plant and their control.
6
Nitrogen fixation: some very useful and indispensable
microorganisms that are commonly found in the soil are the
nitrogen fixers.
MICROBIAL INSECTICIDES
Microbiology and entomology tends to pose a scientific
challenge leading to the development of ‘biological
insecticides’. For instance, Bacillus thuringiensis produce
poisons that are very effective against certain insects but
harmless to other forms of life. Destructive ‘cabbage looper’
and a number of other pests are very susceptible to specific
viruses.
BIOLOGICAL WARFARE
This is another area of microbiological breakthrough which
involves strategies application and/or usage of biological
agents either to kill or incapacitate our enemies. Some viruses
are used as lethal biological agents such as laser viruses. This
particular virus tends to kill fast than one can ever imagine.
Therefore, lethal agents are usually avoided and incapacitated
one tends to be the one of choice. However, biological warfare
have received worldwide condemnation in strong terms,
nonetheless, the relative importance of this exercise
7
CHAPTER TWO
Immersion oil
Oil immersion lenses are specially designed for use with
immersion on the fluids having a refractive index like that of
glass. During operation, the immersion fluid is place on the
slide and should be removes from the lens after use or before
the instrument is stored. Such lens should be cleansed with lens
paper or tissue only. Avoid the use of fluid solvent as this
might cement the instrument while other materials may be
abrasive enough, thus scratching the lens.
10
This technique enable individual to see the size, shape and
arrangement of microorganisms and their motion if motile. In
some cases, bright refractive granules and spores may be seen
within the cells. This technique is limited in scope but provides
valuable information. This is because cells of yeast, moulds,
protozoan and bacteria are colourless and transparent; hence,
there are a lot of difficulties in studying them.
DARKFIELD MICROSCOPE
This is similar to the light microscope; however, the condenser
system is modified so that the specimen is not illuminated
directly. The condenser directs the light obliquely so that the
light is deflected or scattered from the specimen, which then
appears bright against a dark background. Living specimens
may be observed more readily with dark field than with bright
field/ light microscope.
PHASE-CONTRAST MICROSCOPE
Observation of microorganisms in an unstained state is
possible with this microscope. Its optics includes special
11
objectives and a condenser that make visible cellular
components that differ only slightly in their refractive indexes.
As light is transmitted through a specimen with a refractive
index different from that of the surrounding medium, a portion
of the light is refracted (bent) due to slight variations in density
and thickness of the cellular components. The special optics
convert the difference between transmitted light and refracted
rays, resulting in a significant variation in the intensity of light
and thereby producing a discernible image of the structure
under study. The image appears dark against a light
background.
FLUORESCENT MICROSCOPE
This microscope is used most frequently to visualize specimens
that are chemically tagged with a fluorescent dye. The source
of illumination is an ultraviolet (UV) light obtained from a
high-pressure mercury lamp or hydrogen quartz lamp. The
ocular lens is fitted with a filter that permits the longer
ultraviolet wavelengths to pass, while the shorter wavelengths
are blocked or eliminated. Ultraviolet radiations are absorbed
by the fluorescent label and the energy is re-emitted in the form
of a different wavelength in the visible light range. The
fluorescent dyes absorb at wavelengths between 230 and 350
nanometers (nm) and emit orange, yellow, or greenish light.
This microscope is used primarily for the detection of antigen-
antibody reactions. Antibodies are conjugated with a
fluorescent dye that becomes excited in the presence of
ultraviolet light, and the fluorescent portion of the dye becomes
visible against a black background.
ELECTRON MICROSCOPE
In the electron microscope, the specimen is illuminated by a
beam of electrons rather than light, and the focusing is carried
out by electromagnets instead of a set of optics. These
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components are sealed in a tube in which a complete vacuum is
established. Transmission electron microscopes require
specimens that are thinly prepared, fixed, and dehydrated for
the electron beam to pass freely through them. As the electrons
pass through the specimen, images are formed by directing the
electrons onto photographic film, thus making internal cellular
structures visible.
14
2.2.2 SPORE STAINING
Spore formation is one of the protective devices by certain
bacteria to withstand certain unfavorable conditions in their
environment. Certain bacteria, mostly members of the genera
Bacillus and Clostridium produce endospores. A spore is
usually produced by bacteria cell, such spore may be terminal,
sub-terminal or central in their location.
Method
i. Make a thin smear of the bacterial suspension
ii. Heat fix
iii. Stain the smear with gram’s stain
iv. Blot dry with filter or blotting paper
v. Examine under oil immersion lens.
Eukaryotic cells
Eukaryotic cells are more structurally complex than the
prokaryotic cells, it is also larger. The eukaryotic cell has a
16
distinct membrane bounded organelles are also present such as
mitochondria.
17
CHAPTER THREE
18
Some microorganisms reproduce asexually by simple
division, spore formation, budding, fragmentation and
sexually by the formation and fusion of gametes.
Some microorganisms are motile, while others are non-
motile; motile organisms usually have surface appendages
such as cilia, flagella and pseudopodia for movement.
Some microorganisms have innate ability to synthesizes
their own food from simple organic and inorganic
compounds present in the earth atmosphere. This could be
effected through chemosynthesis or photosynthesis.
ii. Size of the colony: the size varies from tiny colony
to small, to medium and to fairly large and large
colonies depending on the physicochemical
condition of the growth medium and the nutrient
composition.
19
iii. Elevation of the colony: this could be flat, raised,
convex or umbonate depend on the position of the
colony with regards to the growth surface
20
v. Optical characteristics: this could be that the
colony is transparent, translucent or opaque. This is
based on the ability to clearly see through a colony
or faintly see through or that one cannot see through
at all.
vi. Colony surface: this could be smooth, rough, dull,
wrinkled, glistering or granular in nature. This tends
to be a dictate of the colony surface appearance on
the solid media.
vii. Pigmentation of the colony: the description is
based on the colour of the colony on solid media.
The pigmentation (colour) of the colony could be
white, red, pink, light yellow, straw yellow, deep
yellow, orange, cream, milk, dull, green and so on
and so forth.
Oxygen concentration
Oxygen serves as the terminal electron acceptor for the
electron-transport chain in aerobic respiration. An organism
that can grow in the presence of atmospheric O 2 is call aerobe,
whereas one that can grow in its absence is an anaerobe.
Pressures
Most organisms spend their lives on land or on the surface of
water, where they are always subjected to atmospheric pressure
and yet are never affected significantly by pressure. The
hydrostatic pressure can reach 600 to 1100 atm in deep sea,
while the temperature is about 2 to 30C. Despite these
extremes, bacteria survive and adapt. Based on the adaptation
ability and survival rate of microorganisms under pressure,
microorganisms are categorized as:
a. Barotolerants: are those that can withstand wide range of
atmospheric pressure.
24
b. Barophilic: those that grow more rapidly at high pressure.
Radiation
Our world is bounded with electromagnetic radiation of
various types. Sunlight being the major source of radiation on
the earth, it includes visible light, ultraviolet (UV) radiation,
infrared rays and radio waves. Visible light is most
conspicuous and important aspect of our environment, all lives
are dependent on the ability of photosynthetic organisms to
trap the light energy of the sun.
Nutritional Requirements
Nutrients require by microorganism for metabolic activity are
divided into two namely (i). Macro-element (macro-nutrient)
and (ii) Micro-element (micro nutrients)
25
MICROBIAL GROWTH CURVE
Microorganisms are known to exhibit a significant and tangible
growth when introduced into a suitable medium. The reasons
are quite obvious, parts of which include favourable conditions
and desired nutritional materials incorporated into the medium
of growth. However, the inoculation of a bacterium into liquid
culture medium tends to revealed certain growth pattern. This
pattern of growth which is typical of bacteria in a batch culture
is what is referred to as a generalized growth curve of a
bacterium grown in liquid (broth) batch culture tends to show
five different phases of growth. These phases of growth are
represented in the figure bellow.
C
D
Cell number B
A
27
CHAPTER FIVE
28
b. Semi-solid media: they are not liquid at ordinary
room temperature and exhibit a gelatinous consistence
because they contains an amount of solidifying agent
(gelatin or agar-agar) that harden them slightly but
does not produce a firm substance. Semi-solid media
are used to restrict slightly the movement of motile
microbes. E.g. Cystine Trypticase Agar
c. Solid media: they are media that provide a firm
surface on which cell can form district colony. They
are vital in isolation and sub-culturing bacteria and
fungi. The solid state of these media is due to the
pr4sence of solidifying agent (agar-agar) which is solid
at room and incubation temperature but melts or
liquefy at water boiling temperature (1000C)
31
6. When heating is require to dissolve the medium, stir
while heating and control the heat to prevent boiling and
foaming which can be dangerous and damage the
medium. Overheating a medium can alter its nutritional
and getting properties and also its pH. Autoclave a
medium, only when the ingredients are completely
dissolved. Always autoclave at the correct temperature
and for the time specified.
32
5.4 TYPES OF CULTURE
There are essentially two types of culture namely (i) Pure
culture and (ii) Mixed culture
PURE CULTURE
This is a culture medium which contains only a single species
of microorganism. Hence, a culture that contains only one
kinds of microorganism at a time is known as pure culture or
axenic culture.
MIXED CULTURE
Materials by nature are exposed to the outside environment
where several species of microorganisms reside. So materials
are known to contain varieties of species of microorganism at a
time. A culture that contains more than one kind of
microorganism is known to be mixed culture. However, if it
contains only two kinds of microorganism deliberately
maintained in association with one another, it is known as two-
member culture. Two member cultures are known to exhibit
syntrophism, in that one of the two members culture tends to
synthesize what the other member lacks needs for growth
particularly essential growth factors.
33
Streaked Plate Method
The streaked plate method appears to be the most widely and
routinely used methods of plating in the laboratory. It involves
the sterilization of wire loop by passing it over blue flame until
it turns reddish. The sterile loop is used to pick a loopful of the
organisms and immediately use to make series of parallel, non-
overlapping streaks on the surface of an already solidified agar
plate. In this event, the inoculum is progressively diluted with
the successive streaks such that even if the initial streaks result
into confluent growth, well isolated discrete colonies
developed along the later streak on the plate. These discrete
colonies on the plate are clearly pure culture and further
subculture can be made from them either for storage and/or for
further microbiological investigation.
34
SUBCULTURING
Sub-culturing is the procedure of transferring microbial cells
from their present g-rowth source to a fresh one. When the
transfer is from solid medium (agar) to liquid medium (broth),
the term “picking off” is employed.
Plating out
This is a technique that aims at obtaining single colonies that
are pure for identification from mixed culture.
35
Preservation under oil
Cultures are first grown in agar slopes and then covered with
sterile liquid paraffin or mineral oil. Culture maintained in this
way will generally remain viable for several years without sub-
culturing
Freezing
This can be achieved directly on the culture medium but for
most organisms, it is necessary to add a pryo-protection agent
such as glycerol/dimethyl suphuroxide before freezing. Better
preservation can be achieved by using liquid Nitrogen
refrigerator maintained at -2000C
Stock Culture
Stock culture is a reserved or kept culture. Pure cultures of
organism obtained are usually kept pure in laboratories for
study and reference and therefore referred to as stock culture.
Stock culture must be maintained so that they are free from
contaminations and retain their viability.
36
CHAPTER SIX
37
Disinfection: Acts of destroying or inactivating or
removal of microorganism, but this process have no effect
on spore forming organisms, example of such spore
former is Clostridium tetani Disinfectants (e.g. phenol-
based) can be useful in killing many bacteria on certain
instruments, but cannot be used for internal consumption
or on skin. Antiseptics (e.g. iodine or 70% alcohol) are
used topically (e.g. on skin surfaces) to reduce bacterial
load.
Antisepsis: This is employed when a living tissue is being
disinfected. This is employed to prevent infection.
Example of such is antiseptic. When used for prevention is
called prophylactic and when used for treatment is called
therapeutic.
Bacteriocidal: Agent that kill bacteria
Bacteriostatic/inhibitory): Agent that prevents their
growth.
Sanitizer: Agent that reduces microbial population to a
save level according to public health standard
STERILIZATION
Sterilization refers to complete killing (or removal) of ALL
organisms in a non-selective fashion in including viruses on/in
an object or on/in a material. For example, autoclaving
involves heating liquids (e.g. media) or solids to 121oC under
steam pressure. The materials must be heat resistant.
39
REFERENCES
40