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Inspired by Nature
Nature is an inventive chemist. Explaining the processes of life in
chemical terms is one of the greatest challenges continuing into the future.
Such complex events as the cleavage of RNA by the enzyme ribonuclease,
the multistep synthesis of ATP in vivo (Paul Boyer and John E. Walker
received Nobel prizes in 1997 for working this out), and the activity of
molecular motors that power bacterial flagellae are now understood in
molecular detail, but these represent only a tiny fraction of the universe of
natural processes.
Imitating some aspects of life, biomimetic chemistry, is not the only
way to invent new things, but it is an important way. Today, the chemical industry produces
ammonia for fertilizers and other products by causing nitrogen to react with hydrogen at high
temperature and pressure. Yet microorganisms in the roots of some legumes are capable of
carrying out the same conversion at ordinary temperatures and pressures. We need to understand
their chemistry, even if it is not as practical as our current methods.
Much research in recent times has centered on trying to understand the chemical mechanisms
by which various biological processes occur. Enzymes are of particular interest because of their
unique selectivity. They can react at a particular site on a molecule even though it’s not the most
chemically reactive site. Enzymes can selectively bind a particular molecule out of the mixture of
substances in the cell, then hold it in such a way that the geometry of the enzyme-substrate
complex determines what happens next in a sequence.
The catalytic mechanisms of enzymes are understood well enough to have already produced
drugs, such as cholesterol-reducing agents, that block the active sites of enzymes. However, the
factors that contribute to enzymes high selectivity are not completely understood, and we do no
yet have good synthetic analogs. A full understanding of enzymes will be of great value in
manufacturing and also the development of new classes of medicines.
The sequencing of the human genome has provided a molecular foundation from which
other complex biological processes might be tackled at a molecular level. A critical challenge in
the postgenomic era will be to make the connections between protein sequence and architecture,
and between protein architecture and functions. The 3D shape of a protein is a key factor in
determining its function. If chemists could predict how a protein folds and how that folded
structure is related to function, they could then seek to design new functions for proteins that
would have a profound impact on medicine.
One of the most intriguing aspects of nature is the process of evolution, which illustrates the
ability of living systems to self-optimize. If the chemical sciences could build on this approach, a
system would produce the optimal new substance as a single product, rather than as a mixture
from which the desired component must be isolated and identified. Self-optimizing systems
would allow visionary chemical scientists to use this approach to make new medicines, catalysts,
and other important chemical products, in part by combining new approaches to informatics
with rapid experimental screening methods.
The Committee on Challenges for the Chemical Sciences in the 21st Century: Ronald Breslow,
Columbia University (Co-Chair), Matthew V. Tirrell, University of California, Santa Barbara
(Co-Chair), Jacqueline K. Barton, CalTech, Mark A. Barteau, University of Delaware, Carolyn
R. Bertozzi, University of California, Berkeley, Robert A. Brown, MIT, Alice P. Gast, MIT,
Ignacio E. Grossmann, Carnegie Mellon University, James M. Meyer, E.I. du Pont de Nemours
& Co., Royce W. Murray, University of North Carolina, Paul J. Reider, Amgen, Inc., William
R. Roush, University of Michigan, Michael L. Shuler, Cornell University, Jeffrey J. Siirola,
Eastman Chemical Company, George M. Whitesides, Harvard University, Peter G. Wolynes,
University of California, San Diego, Richard N. Zare, Stanford University.
For more information: Contact the National Academies’ Board on Chemical Sciences and Technology
(BCST) at (202) 334-2156. Beyond the Molecular Frontier: Challenges for Chemistry and the Chemical
Sciences is available from the National Academies Press, 500 5th Street, Washington, DC, 20001; (800)
624-6242 or at http://www.nap.edu.