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  • SMART - Sequence Analysis Results Mundtii 1

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    aerum deiji
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    The document summarizes the results of a domain architecture analysis of a protein query. It displays the domains predicted in the query protein with confidence based on score cutoffs. These include an S_TKc domain and several PASTA repeats. It also lists additional domains and features that were detected in the protein but not depicted in the diagram due to thresholds or overlaps.

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    SMART_ Sequence analysis results mundtii 1

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    The document summarizes the results of a domain architecture analysis of a protein query. It displays the domains predicted in the query protein with confidence based on score cutoffs. These include an S_TKc domain and several PASTA repeats. It also lists additional domains and features that were detected in the protein but not depicted in the diagram due to thresholds or overlaps.

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    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
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    5 views1 page

    SMART - Sequence Analysis Results Mundtii 1

    Uploaded by

    aerum deiji
    The document summarizes the results of a domain architecture analysis of a protein query. It displays the domains predicted in the query protein with confidence based on score cutoffs. These include an S_TKc domain and several PASTA repeats. It also lists additional domains and features that were detected in the protein but not depicted in the diagram due to thresholds or overlaps.

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
    Flag for inappropriate content
    of 1

    11/27/22, 3:40 PM SMART: Sequence analysis results

    keywords... Search SMART

    +
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    SETUP
    FAQ
    ABOUT S_TKc
    PASTA PASTA PASTA PASTA
    GLOSSARY
    WHAT'S NEW
    0
    FEEDBACK
    100 200 300 400 500 600

    Architecture

    Domain architecture analysis


    Display all proteins with similar:
    Domain organisation: Proteins having all the domains as the query in the same order. Additional domains are allowed.
    Domain composition: Proteins with the same domain composition have at least one copy of each of domains of the query.

    The SMART diagram above represents a summary of the results shown below. Domains with scores less significant than established cutoffs are not shown in the diagram. Features are also not shown when two or more occupy the
    same piece of sequence; the priority for display is given by SMART > PFAM > PROSPERO repeats > Signal peptide > Transmembrane > Coiled coil > Unstructured regions > Low complexity. In either case, features not
    shown in the above diagram are marked as 'overlap' in the right side table below.

    Confidently predicted domains, repeats, motifs and features: Features NOT shown in the diagram:
    Name Start End E-value Name Start End E-value Reason
    S_TKc 12 269 5.87e-71 RIO 8 189 132 threshold
    low complexity 311 326 N/A TyrKc 12 268 9.54e-15 threshold
    transmembrane region 339 361 N/A ARF 23 186 1530 threshold
    PASTA 362 430 3.26e-13 CaMBD 35 84 103000 threshold
    PASTA 431 501 6.72e-15 WSN 107 169 1070 threshold
    PASTA 502 568 0.00228 Tbf5 112 167 222000 threshold
    PASTA 569 637 4.51e-7 AICARFT_IMPCHas 139 386 96000 threshold
    low complexity 641 681 N/A ACTIN 234 526 1020 threshold
    Click on a row to highlight the feature in the diagram above. Click the feature name for more information. RNA_pol_Rpb6 248 284 292000 threshold
    TFIIA 259 493 191000 threshold
    NPP 280 313 73300 threshold
    Cation_ATPase_N 312 359 70700 threshold
    NPCBM 322 459 31500 threshold
    low complexity 331 357 N/A overlap
    P-II 341 431 89200 threshold
    IL1 372 500 286 threshold
    Sec7 376 535 1600 threshold
    Cpn10 376 428 102000 threshold
    G5 378 434 13300 threshold
    Tet_JBP 387 681 125000 threshold
    RHOD 435 542 1070 threshold
    LEM 438 469 468 threshold
    UBA 445 480 125 threshold
    Fmp27_SW 448 522 36400 threshold
    HTH_CRP 493 538 618 threshold
    HTH_LACI 494 551 1820 threshold
    smart.embl-heidelberg.de/smart/job_status.pl?jobid=11513321320925521669534655tQJiCbwqVG 1/2

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