BioSQL 1.

0 -- Relational Model
Seqfeature Path Term Path
Bioentry Path
Term Path Id
Object Seqfeature Id (FK) Subject Term Id (FK)
Object Bioentry Id (FK)
Subject Seqfeature Id (FK) Predicate Term Id (FK)
Subject Bioentry Id (FK)
Term Id (FK) Object Term Id (FK)
Seqfeatures Distance
Term Id (FK)
Ontology Id (FK)
Distance
with Location Distance
and Annotation Ontology Terms
and Relationships
Seqfeature Relationship
Seqfeature Relationship Id Location Qualifier Value
Location
Object Seqfeature Id (FK) Location Id Location Id (FK)
Subject Seqfeature Id (FK) Term Id (FK)
Term Id (FK) Seqfeature Id (FK)
Dbxref Id (FK) Value
Rank
Term Id (FK) Int Value
Start Pos
End Pos
Strand Term Relationship
Rank Term Relationship Id
Seqfeature Qualifier Value Subject Term Id (FK)
Seqfeature Id (FK) Predicate Term Id (FK)
Seqfeature Dbxref Object Term Id (FK)
Term Id (FK)
Seqfeature Id (FK) Rank Ontology Id (FK)
Dbxref Id (FK)
Value
Rank Seqfeature
Seqfeature Id
Bioentry Id (FK)
Type Term Id (FK)
Bioentry Qualifier Value
Source Term Id (FK)
Display Name
Rank Bioentry Id (FK)
Dbxref Qualifier Value Term Dbxref
Term Id (FK)
Dbxref Id (FK) Value Term Id (FK)
Term Id (FK) Rank Dbxref Id (FK)
Rank
Rank
Value
Term
Term Id
Name
Definition
Bioentry Reference Identifier Term Synonym
Is Obsolete
Bioentry Id (FK) Comment Bioentry Relationship Term Id (FK)
Ontology Id (FK)
Reference Id (FK) Bioentry Relationship Id Synonym
Comment Id
Rank
Bioentry Id (FK) Object Bioentry Id (FK)
Start Pos Subject Bioentry Id (FK)
Comment Text
End Pos Term Id (FK)
Rank
Rank

Biosequence
Reference Bioentry Dbxref
Bioentry Id (FK)
Reference Id Bioentry Id (FK) Ontology
Dbxref Id (FK) Alphabet
Dbxref Id (FK) Ontology Id
Version
Location Rank Length Name
Title Dbxref Bioentry Seq Definition
Authors
Crc Dbxref Id Bioentry Id
Dbname Biodatabase Id (FK)
Accession Taxon Id (FK)
Version Name Taxon Name
Accession
Taxon
Identifier
Division Taxon Id Taxon Id (FK)
Description Name
Ncbi Taxon Id
Version Name Class
Parent Taxon Id (FK)
Annotation Bundle Biodatabase Node Rank
Biodatabase Id Genetic Code
Mito Genetic Code
Name
Left Value
Authority
Right Value
Description
Bioentry with
Taxon and Namespace

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