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9 Total and thermotolerant

coliforms and Escherichia coli

9.1 Introduction substrates for the enzyme in the culture medium.


One of these substrates is ONPG (ortho-nitrophenyl-
Most of the guidelines contained in this chapter are β-D-galactopyranoside) which, when degraded by
taken from the Chapter 8 of the 4th Edition of the Com- β-galactosidase, results in a yellow reaction product.
pendium of Methods for the Microbiological Examination Other substrates are X-GAL (5-bromo-4-chloro-3-
of Foods (Kornacki and Johnson, 2001). When different indolyl-β-D-galactopyranoside), which results in an
from or complementary to those of the Compendium, intensely blue reaction and Salmon-Gal (6-chloro-
they were completed with information and recommen- 3-indolyl-β-D-galactopyranoside), which results in a
dations from the 17th Edition of Standard Methods for salmon-pink to red color.
the Examination of Dairy Products (Wehr and Frank,
2004), specific to the microbiological examination of
dairy products, and section 9221 of the 21st Edition 9.1.2 Definition of thermotolerant
of the Standard Methods for the Examination of Water coliforms
and Wastewater (Hunt and Rice, 2005), specific to the
microbiological examination of water. The group of thermotolerant coliforms, commonly
called fecal coliforms, is a subgroup of the total colif-
orm group and includes only members that are capable
9.1.1 Definition of total coliforms of fermenting lactose in 24 hours at 44.5–45.5°C, with
the production of gas. The objective of this definition
The group of total coliforms is a subgroup of the Entero- was, in principle, to select only Enterobacteriaceae origi-
bacteriaceae family, which in the 2nd Edition of Bergey’s nating from the gastrointestinal tract (E. coli), but it is
Manual of Systematic Bacteriology (Brenner and Farmer known that the group also includes members of non-fe-
III, 2005) includes 44 genera and 176 species. The total cal origin (several strains of Klebsiella pneumoniae, Pan-
coliforms group comprises only Enterobacteriaceae capa- toea agglomerans, Enterobacter aerogenes, Enterobacter
ble of fermenting lactose with the production of gas, in cloacae and Citrobacter freundii). Because of this, the
24 to 48 hours at 35°C. More than 20 species fit this term “fecal coliforms” has been gradually substituted by
definition, among which one can find not only bacteria “thermotolerant coliforms”
that originate from the gastrointestinal tract of humans
and other hot-blooded animals (Escherichia coli), but
also non-enteric bacteria (Citrobacter, Enterobacter, 9.1.3 Escherichia coli
Klebsiella and Serratia species, among others).
The ability to ferment lactose can be verified by E. coli is included both in the group of total coliforms
the formation of gas and/or acid, in culture media as in that of thermotolerant coliforms. Its natural
containing lactose. These characteristics are used in habitat is the intestinal tract of hot-blooded animals,
the traditional methods to enumerate total coliforms. although it may also be introduced into foods via non-
The most modern methods directly detect the activ- fecal sources. E. coli is traditionally distinguished from
ity of the β-galactosidase enzyme, which is involved in the other thermotolerant coliforms by its growth char-
the fermentative metabolism of lactose, incorporating acteristics in L-EMB Agar (Levine’s Eosine Methylene

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90 Microbiological examination methods of food and water

Blue Agar) and the profile of the results when subjected to assess the safety (innocuity) of foods as a function
to the indole, methyl red, Voges Proskauer and citrate of the levels of E. coli, thermotolerant coliforms, total
(IMVC) tests. The most modern methods differentiate coliforms or Enterobacteriaceae. High levels of these
E. coli by verifying the activity of the β-glucuronidase microorganisms may, under certain circumstances, be
enzyme, produced by 96% of the E. coli strains, includ- related to or associated with a greater probability of the
ing the anaerogenic (i.e. non-gas producing) strains presence of enteric pathogens, however, frequently this
(Feng and Hartman, 1982). One of the substrates uti- is not the case. In the same way, its absence does not
lized to verify the activity of β-glucuronidase is MUG necessarily mean that the products are free from enteric
(4-methylumbelliferyl-β-D-glucuronide), which, when pathogenic bacteria. Kornacki and Johnson (2001)
degraded by β-glucuronidase, results in 4-methyl- listed the following applications for these microorgan-
umbelliferone, which is fluorescent under UV light. isms as indicators:
Another substrate commonly used to this purpose is
BCIG (5-bromo-4-chloro-3-indolyl-β-D-glucuronide), a) Enterobacteriaceae and coliforms – indicators of the
also called X-β-D-Glucuronide, which when degraded hygienic conditions of manufacturing processes,
by the enzyme, forms a blue reaction product. since they are easily inactivated by sanitizing agents
and capable of colonizing several niches in process-
ing plants, when sanitation and cleaning procedures
9.1.4 Use as indicators are inappropriate or inadequately executed.
b) Coliforms – indicators of processing flaws or post-
According Kornacki and Johnson (2001) E. coli was ini- processing contamination of pasteurized foods,
tially introduced as an indicator in 1892 in Australia since they are easily destroyed by heat and do not
and in 1895 in the United States. It was used to indicate survive heat treatment.
the contamination of water by fecal material and, con- c) E. coli – indicator of fecal contamination in fresh
sequently, to alert for the potential presence of enteric (“in natura”) foods (but not in processed foods).
pathogens (Salmonella, for example). The standard was
changed to total coliforms in 1915, by the U.S. Pub-
lic Health Service, based on the (questionable) premise 9.1.5 Methods of analysis
that all coliforms were of equal value as indicators of
fecal contamination. After their use as indicators of the Classical MPN method: The classical method to per-
microbiological quality of water, they began to be uti- form total coliforms, thermotolerant coliforms and
lized for the same purpose for foods in general, without E. coli counts in water and foods is the Most Probable
any judicious and thorough evaluation of the validity Number (MPN) technique, which includes the follow-
of their use to this purpose in different products. At ing steps: 1°) Presumptive test, in which three aliquots
present, the premise that there is a direct correlation of three dilutions of the sample are inoculated into a
between high numbers of E. coli, thermotolerant col- series of three tubes containing Lauryl Sulphate Tryp-
iforms, total coliforms and Enterobacteriaceae in foods tose (LST) broth per dilution. LST contains lactose and
with fecal contamination is no longer valid, for a series the observation of growth accompanied by the produc-
of reasons: 1) E. coli, thermotolerant coliforms, total tion of gas from lactose fermentation, after 24–48 h
coliforms or Enterobacteriaceae are not obligate inhabit- incubation at 35°C, is considered indicative or suspect
ants of the intestinal tract of hot-blooded animals, and (presumptive) of the presence of coliforms. 2°) For the
can be found in a number of different environmental confirmation of total and thermotolerant coliforms, a
reservoirs. 2) The presence of these microorganisms is loopful of each suspected tube is transferred to tubes
common in food processing environments, and may with Brilliant Green Bile (BGB) Broth 2% and E. coli
even become part of the resident microbiota of the facil- Broth (EC), selective culture media containing lactose.
ity (especially when cleaning and sanitation conditions The observation of growth with the production of gas
are inadequate). 3) Several strains of E. coli, coliforms or in the BGB tubes, after 24–48 h incubation at 35°C, is
Enterobacteriaceae may grow in refrigerated foods. considered confirmative of total coliforms. Growth with
Based on these facts, the Food and Agricultural gas production in the EC tubes, after 24 h incubation at
Organization and the World Health Organization 45.5°C (or 44.5°C, in the case of water), is considered
(FAO/WHO, 1979) concluded that it is not possible confirmative of thermotolerant coliforms. 3°) The EC

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Total and thermotolerant coliforms and Escherichia coli 91

tubes testing positive for the presence of thermotolerant between all the components ensures the specificity of
coliforms are suspected of the presence of E. coli. For the result. The medium contains two substrates for
confirmation, a loopful of each tube is streaked onto enzymes: a) ortho-nitrophenyl-β-D-galactopyranoside
Levine’s Eosine Methylene Blue (L-EMB) Agar, a differ- (ONPG), a substrate for the β-galactosidase enzyme
ential selective medium to distinguish E. coli from other of coliforms, the reaction product of which is yellow.
thermotolerant coliforms. If any development of typi- b) 4-methylumbelliferyl-β-D-glucuronide (MUG), a
cal E. coli colonies is observed on L-EMB, two of these substrate for the β-glucuronidase enzyme of E. coli, the
colonies are to be isolated for the biochemical indole, reaction product of which is fluorescent under UV light.
MR, VP and citrate (IMVC) assays. The cultures with The test can be conducted in two ways: a) Presence/
the + + − − (biotype 1) or − + − − (biotype 2) profiles absence in 100 mL, by adding the culture medium to
are considered confirmed. 100 ml of the sample (the sterile, dried medium is mar-
In the classical MPN method, the last step of the keted in ampoules containing the exact quantity neces-
test is optional and many laboratories conclude the sary for 100 ml samples). b) Most probable Number
analysis with the confirmation of thermotolerant colif- (MPN) in 100 ml, by dividing the 100 ml into 10 aliq-
orms. When the presence of E. coli is verified, the assay uots of 10 ml each.
is referred to as “complete test”. In water analysis, the Plate count method: For the enumeration of total
section 921 of the 21st Edition of the Standard Meth- coliforms in foods, the Chapter 8 of the Compendium
ods for the Examination of Water and Wastewater (Hunt (Kornacki and Johnson, 2001) and the Chapter 7 of the
and Rice, 2005) recommends different procedures from Standard Methods for the Examination of Dairy Products
those used for the confirmation of E. coli. One of these (Davidson et al., 2004) also recommend the direct plate
consists in transferring the suspected cultures obtained count method in plates containing Violet Red Bile Agar
in LST to tubes containing EC broth with MUG. After (VRB). This method is based on the same counting
incubation at 44.5ºC/24 h, the cultures showing blue principle as that of the Enterobacteriaceae plate count,
fluorescence under UV light are considered confirmed. described in a specific chapter, but uses lactose instead
Another procedure is the transference from LST to Tryp- of glucose, in the VRB Agar.
tone (Tryptophane) Broth, incubation at 44.5ºC/24 h Petrifilm™ (3M Company). This is a modified ver-
and the indole test. The cultures that are positive in the sion of the Colony Formining Unit (CFU) plate count,
indole test are considered confirmed. and consists of two sterile, rehydratable films impreg-
In the MPN method developed by ISO 7251:2005 nated with culture medium and cold-water-soluble-
for thermotolerant coliforms in foods, incubation in gelling agents. Inoculation is done directly onto the
EC broth is done at 44 ± 1ºC and the presumptive bottom film, which, after inoculation, is covered with
confirmation of the presence of E. coli also utilizes the the top film. The inoculum is evenly distributed over
indole test, after growth in Tryptone (Tryptophane) the circular growth area of the bottom film by gentle
Broth at 44 ± 1ºC. The main advantage of the ISO manual pressing with a plastic spreader and, after solidi-
method is that the acceptable temperature variation fication of the gel, the plates are incubated for the devel-
is ±1ºC, which can be achieved in laboratory incu- opment of colonies.
bators. In the Compendium, the maximum acceptable The culture medium that forms the basis of the sys-
variation is ±0.2°C, which requires a water bath for tem is Violet Red Bile (VRB), selective for enterobac-
incubation. The big problem with this requirement is teria, supplemented with triphenyltetrazolium chloride
that water baths with this level of temperature stability (TTC), an indicator that, when reduced, colors colonies
are rather expensive, as are the thermometers capable red, thereby facilitating their visualization. The medium
of detecting this variation. contains lactose, which, fermented by coliforms or
Chromogenic substrate method: For the determi- E. coli, produces gas bubbles around the colonies. Typi-
nation of total coliforms and Escherichia coli in water, cal colonies appear red surrounded by gas bubbles. In
an extremely simple and practical method is that of the petrifilm version for coliforms + E. coli, the medium
the chromogenic and fluorogenic substrate (COLIL- also contains BCIG, a chromogenic substrate for the
ERT®) AOAC 991.15 (Horwitz and Latimer, 2010), a β-glucuronidase enzyme, which allows to differenti-
culturing technique based on the addition of a defined ate E. coli by the formation of a blue precipitate sur-
or specific and at the same time differential culture rounding the colonies. The high-sensivity petrifilm
medium to the sample, in which the exact balance version (High-Sensitivity Coliform Count Plate) allows

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92 Microbiological examination methods of food and water

Table 9.1 Analytical kits adopted as AOAC Official Methods for coliforms and E. coli in foods (Horwitz and Latimer, 2010, AOAC Inter-
national, 2010).

Method Kit Name and Manufacturer Principle Matrices

986.33 Petrifilm™ Coliform Count Plate, Cultural, plate count in dry Milk.
3M Microbiology Products rehydratable film
989.10 Petrifilm™ Coliform Count Plate, Cultural, plate count in dry Dairy products.
3M Microbiology Products rehydratable film
996.02 Petrifilm™ HSCC (High Sensitivity Cultural, plate count in dry Dairy products.
Coliform Count Plate), rehydratable film
3M Microbiology Products
991.14 Petrifilm™ E.coli/ Coliform Count Plate, Cultural, plate count in dry Foods.
Petrifilm™ Coliform Count Plate, rehydratable film
3M Microbiology Products
2000.15 Petrifilm™ Rapid Coliform Count Plate, Cultural, plate count in dry Foods (not applicable to hash
3M Microbiology Products rehydratable film brown potatoes).
2005.03 SimPlate Coliforms and Cultural (MPN), sample distributed Foods.
E. coli Color Indicator, into a device with multiple wells
BioControl Systems Inc. containing substrates for β-galactosidase
and β-glucuronidase
991.15 Colilert, Idexx Laboratories Inc. ONPG and MUG substrates for Water.
β-galactosidase and β-glucuronidase
992.30 ColiComplete®, X-GAL and MUG substrates for All foods.
BioControl Systems Inc. β-galactosidase and β-glucuronidase
983.25 ISO-GRID, Neogen Corp. Cultural, membrane filtration MPN Foods.
990.11 ISO-GRID, Neogen Corp. Cultural, membrane filtration MPN Foods.
2009.02 TEMPO® System, bioMérieux Inc. Cultural (MPN) automated, sample Raw ground beef, bagged lettuce,
distributed into a device with multiple cooked chicken, pasteurized
wells containing substrates for crabmeat, frozen green beans,
β- glucuronidase and pasteurized whole milk.

MPN = Most probable number, MUG = 4-methylumbelliferyl-β-D-glucoronide, ONPG = o-nitrophenyl-β-D-galactopyranoside, X-GAL =


5-bromo-4-chloro-3-indolyl-β-D-galactopyranoside.

the inoculation of volumes of 5 ml while the petrifilm of the Compendium of Methods for the Microbiological
version for rapid counts (Rapid Coliform Count Plate) Examination of Foods (Kornacki and Johnson, 2001).
allows to obtain the result within 6 to 14 h. Included also recommendations from Chapter 7 of the
Other methods that already have been officially rec- Standard Methods for the Examination of Dairy Products
ognized by the AOAC International are the microbio- (Davidson et al., 2004), specific to the examination of
logical test kits described in Table 9.1. dairy products. In the Compendium is also applied to
the examination of bottled water.

9.2 Most probable number (MPN)


method APHA 2001 for total 9.2.1 Material required for analysis
coliforms, thermotolerant
coliforms and E. coli in foods Preparation of the sample and
serial dilutions
Method of the American Public Health Association • Diluent: 0.1% Peptone Water (PW) or Butterfield’s
(APHA), as described in Chapter 8 of the 4th Edition Phosphate Buffer

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Total and thermotolerant coliforms and Escherichia coli 93

• Dilution tubes containing 9 ml 0.1% Peptone Water check the pH of the 10−1 dilution and adjust to 6.8
(PW) or Butterfield’s Phosphate Buffer if necessary (with sterile NaOH).
• Observation: consult Annex 2.2 of Chapter 2 to Prepare subsequent decimal dilutions of the sam-
check on special cases in which either the type or ple. Select three appropriate dilutions and inoculate
volume of diluent vary as a function of the sample three 1 ml portions of each dilution onto three tubes
to be examined. with 10 ml of Lauryl Sulfate Tryptose Broth (LST).
Follow the orientation of the Table 4.1 (Chapter 4)
Total and thermotolerant coliforms count to select the dilutions according the expected level
• Lauryl Sulfate Tryptose (LST) Broth tubes (10 ml) of sample contamination by coliforms
• Brilliant Green Bile (BGB) Broth 2% with Durham Note a.1) Use 5-tube MPN series for analysis of shellfish and
tubes shellfish harvest waters.
• E. coli (EC) Broth with Durham tubes If the expected count is low, inoculate three
• Pure culture E. coli 10 ml aliquots of the 10−1 dilution onto three tubes
• Pure culture E. aerogenes with 10 ml of LST Broth double strength, three
• Laboratory incubator set to 35 ± 0.5°C 1 ml aliquots of the 10−1 dilution onto three tubes
• Water bath set to 45.5 ± 0.2°C with 10 ml of LST Broth single strength, and three
• Water bath set to 44.5 ± 0.2°C 1 ml aliquots of the 10−2 dilution onto three tubes
with 10 ml of LST Broth single strength.
E. coli count (traditional method for foods) For liquid samples with low count it is possible to
(optional) start the series without dilution: 3 × 10 ml of sam-
• Levine’s Eosin Methylene Blue (L-EMB) Agar ple without dilution onto 3 × 10 ml of LST Broth
• Plate Count Agar (PCA) slants double strength, 3 × 1 ml of sample without dilu-
• Koser’s Citrate Broth or Simmons Citrate Agar slants tion onto 3 × 10 ml of LST Broth single strength
• Tryptone (Tryptophane) Broth and 3 × 10 ml of 10−1 dilution onto 3 × 10 ml of
• MR-VP Broth LST Broth single strength. If the food is acid adjust
• Indole Kovacs Reagent the pH of the three double strength LST tubes to
• Methyl Red Solution 6.8 after the inoculation (with sterile NaOH).
• Voges-Proskauer (VP) Test Reagents (5% α-naphthol For liquid samples with low count it is also possi-
alcoholic solution, 40% potassium hydroxide aque- ble to apply a MPN single dilution test, inoculating
ous solution, creatine phosphate crystals) 5 × 10 ml aliquots of the sample without dilution
• Laboratory incubator set to 35 ± 0.5°C onto 5 × 10 ml of LST Broth double strength. If the
food is acid adjust the pH of the five double strength
LST tubes to 6.8 after the inoculation (with sterile
9.2.2 Procedure NaOH).
b) Incubation for presumptive test: Incubate LST
A general flowchart for the detection of total coliforms, tubes at 35 ± 0.5°C/24 ± 2 h. Examine tubes and
thermotolerant coliforms and E. coli in foods by the record reactions at 24 ± 2 h for gas (displacement of
MPN Method APHA 2001 is shown in Figure 9.1. medium in fermentation vial or effervescence when
Before starting activities, carefully read the guide- tubes are gently agitated). Re-incubate gas-negative
lines in Chapter 4, which deals with all details and care tubes for an additional 24 h and examine and record
required for performing MPN tests. The procedure reactions again at 48 ± 2 h. Perform confirmed test
described below does not present these details, as they on all presumptive positive (gas) tubes.
are supposed to be known to the analyst. Note b.1) The accepted temperature variation in the Standard
Methods for the Examination of Dairy Products (Dav-
a) Preparation of the samples and inoculation: idson et al., 2004) is ± 1°C. In the Compendium of
Methods for the Microbiological Examination of Foods
Following the procedures described in Chapter 2,
(Kornacki and Johnson, 2001) is ± 0.5°C to har-
homogenize 25 g or 25 ml of sample with 225 ml monize with the Standard Methods for the Exami-
of 0.1% Peptone Water (PW) or Butterfield’s Phos- nation of Water and Wastewater (Hunt and Rice,
phate Buffer (10−1 dilution). If the food is acid 2005).

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-1 -2 -3
10 10 10
Homogenization 1ml 1ml

9ml 9ml
PW PW

25g of samle +
225ml of Peptoned Water (PW)

1ml 1ml 1ml 1ml 1ml 1ml 1ml 1ml 1ml

PRESUMPTIVE
TEST
Lauryl Sulfate Tryptose
(LST) broth (10ml)

o
35±0.5 C/24±2h - 48±2h

Tubes of LST
with growth and gas production

1 loopful 1 loopful

THERMOTOLERANT E. coli TOTAL COLIFORMS


COLIFORMS CONFIRMATIVE TEST
E. aerogenes
CONFIRMATIVE TEST

o
E.coli (EC) broth 44.5±0.2 C/24±2h Brilliant Green Bile Broth (BGB) 2%
45.5±0.2oC/24±2h (shellfish) 35±0.5oC/24±2h - 48±2h
Water bath
BGB tubes with growth and gas production
EC tubes with growth and gas production

TOTAL COLIFORMS
THERMOTOLERANT (MPN/g)
COLIFORMS
(MPN/g)

Reincubate more 24±2h

E.coli confirmation

Figure 9.1 Continued.

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Streak a loopful from EC positive tubes

Levine’s Eosin Methylene Blue (L-EMB) Agar

35±1oC/24±2h

Typical colonies

Plate Count Agar (PCA)

35±1oC/24±2h

BIOCHEMICAL SERIE

Koser’s Citrate Broth or


Simmons Citrate Agar MR-VP Broth Tryptone (Tryptophane) Broth

Gram staining
35±1oC/48±2h (VP)
35±1oC/96±2h 35±1oC/96±2h (MR) 35±1oC/24±2h

Gram negative rods


CITRATE TEST (-) VP(-) MR (+) TESTS INDOLE TEST (+ or -)

Confirmed tubes

E.coli
MPN/g

Figure 9.1 Scheme of analysis for the enumeration of total and thermotolerant coliforms and E. coli in foods using the MPN Method APHA
2001 (Kornacki and Johnson, 2001).

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96 Microbiological examination methods of food and water

c) Confirmed test for total coliforms: From each gas- for confirmation by IMVC tests (indole, methyl
sing LST tube, transfer a loopful of suspension to a red, Voges-Proskauer and citrate).
tube of Brilliant Green Bile Broth (BGB). Incubate e.1) Citrate test: Lightly inoculate a tube of
BGB tubes at 35 ± 0.5°C/24 ± 2 h and examine Koser’s Citrate Broth and incubate at
for gas production, indicative of a positive result. 35 ± 1°C/96 ± 2 h. Development of dis-
Re-incubate gas-negative tubes for an additional tinct turbidity (growth) is positive reaction.
24 h and examine and record reactions again at Alternatively, Simmons Citrate Agar (slants)
48 ± 2 h. Calculate most probable number (MPN) may be used. Inoculate by streaking slant and
following the instructions described in Chapter 4, stabbing butt. Incubate at 35°C/96 h. Posi-
using a MPN table. tive test is indicated by presence of growth,
d) Confirmed test for thermotolerant (fecal) colif- usually accompanied by color change from
orms: From each gassing LST tube, transfer a loop- green to blue. Negative test is indicated by
ful of suspension to a tube of E. coli Broth (EC). no growth or very little growth and no color
Incubate EC tubes at 45.5 ± 0.2°C/24 ± 2 h for change.
most foods and 44.5 ± 0.2°C/24 ± 2 h for waters e.2) Indole test: Inoculate tube of Tryptone
and shellfish, preferably in a circulating water bath. (Tryptophane) Broth and incubate at
If a variety of food types are to be examined, a single 35 ± 1°C/24 ± 2 h. Test for indole by add-
incubation temperature of 45.0 ± 0.2°C/24 ± 2 h ing 0.2–0.3 ml of Indole Kovacs Reagent.
should be suffice. Examine tubes for gas produc- Appearance of distinct red color in upper
tion, indicative of a positive result. Calculate the layer is positive test and lack of red color is
thermotolerant coliforms most probable number negative test).
(MPN) following the instructions described in e.3) Methyl red (MR) and Voges-Proskauer
Chapter 4, using a MPN table. (VP) tests: Lightly inoculate tube of MR-VP
Note d.1) Place all the EC tubes in the water bath within Broth and incubate at 35 ± 1°C/48 ± 2.
30 min after inoculation. Maintain a sufficient Perform Voges-Proskauer (VP) test at room
water depth in the water bath incubator to immerse temperature as follows: Transfer 1 ml 48 h
the EC tubes to upper level of the medium. Incu-
culture to test tube and incubate remain-
bate an EC tube of E. coli and an EC tube of E.
aerogenes in the same water bath as positive and der of MR-VP broth an additional 48 h at
negative control. 35 ± 1°C. Add Voges-Proskauer (VP) Test
Note d.2) If the analysis will continue (E. coli count com- Reagents as follows: 0.6 ml α-naphthol,
pleted test below), re-incubate negative EC tubes shake well, 0.2 ml of 40% KOH solution and
for an additional 24 h. shake. To intensify and speed reaction, add
e) Completed test for E. coli in foods (optional): a few crystals of creatine. Read results after
Procedure described by the Compendium (Kornacki 4 h. Development of pink-to-ruby red color
and Johnson, 2001) and by the Standard Methods throughout medium is positive test and lack
for the Examination of Dairy Products (Davidson of red color is negative test. Perform methyl
et al., 2004). red test as follows: To 5 ml of 96 h MR-VP
From each gassing 48 h EC tube, streak (for iso- broth, add 5–6 drops of methyl red indicator.
lation) a loopful to a Levine’s Eosin Methylene Blue Read results immediately. Most E. coli cul-
Agar (L-EMB) plate. Incubate at 35 ± 1°C/24 ± 2 h tures give positive test, indicated by diffuse
and examine plates for suspicious E. coli colonies red color in medium. A distinct yellow color
(dark centered and flat, with or without metallic is negative test.
sheen).
Transfer two suspicious colonies from each Consider as E. coli the cultures of Gram
L-EMB plate to Plate Count Agar (PCA) slants, negative rods, indole negative or positive, MR
incubate at 35 ± 1°C/24 ± 2 h and use for further positive, VP negative and citrate negative.
testing. Calculate most probable number (MPN)
From PCA slants prepare a smear for Gram stain following the instructions described in
and inoculate cultures into the following broths, Chapter 4, using a MPN table.

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Total and thermotolerant coliforms and Escherichia coli 97

9.3 Most probable number (MPN) a) Preparation of the samples and inoculation:
methods ISO 4831:2006 and Following the procedures described in Chapter 2,
ISO 7251:2005 for total coliforms homogenize m grams of the test sample with 9 m
and presumptive E. coli in foods milliliters of Saline Peptone Water (SPW) or Buff-
ered Peptone Water (BPW) (10−1 dilution). If the
These methods of the International Organization for food is acid check the pH of the 10−1 dilution and
Standardization are applicable to products intended for adjust to 6.8 if necessary (with sterile NaOH).
human consumption or for the feeding of animals, and Note a.1) ISO 4831:2006 and ISO 7251:2005 do not establish
to environmental samples in the area of food produc- the sample quantity in the analytical unity. A com-
monly weight used is 25 g of the sample in 225 ml of
tion and food handling.
the diluent.
Prepare subsequent decimal dilutions of the sam-
9.3.1 Material required for analysis ple. Select three appropriate dilutions and inoculate
three 1 ml portions of each dilution onto three tubes
Preparation of the sample and serial with 10 ml of Lauryl Sulfate Tryptose Broth (LST).
dilutions Follow the orientation of the Table 4.1 (Chapter 4)
• Diluent: Saline Peptone Water (SPW) or Buffered to select the dilutions according the expected level
Peptone Water (BPW) of sample contamination by coliforms.
• Dilution tubes containing 9 ml Saline Peptone Note a.2) For some products and/or each time that results of
greater accuracy are required, it may be necessary to
Water (SPW) or Buffered Peptone Water (BPW)
inoculate series consisting of more then three tubes
• Observation: consult Annex 2.2 of Chapter 2 to (e.g. five tubes).
check on special cases in which either the type or If the expected count is low, inoculate three
volume of diluent vary as a function of the sample 10 ml aliquots of the 10−1 dilution onto three tubes
to be examined. with 10 ml of LST Broth double strength, three
Total coliforms and presumptive 1 ml aliquots of the 10−1 dilution onto three tubes
E. coli count with 10 ml of LST Broth single strength, and three
• Lauryl Sulfate Tryptose (LST) Broth tubes (10 ml) 1 ml aliquots of the 10−2 dilution onto three tubes
• Brilliant Green Bile (BGB) Broth 2% with Durham with 10 ml of LST Broth single strength.
tubes For liquid samples with low count it is possible to
• E. coli (EC) Broth with Durham tubes start the series without dilution: 3 × 10 ml of sam-
• Tryptone (Tryptophane) Broth ple without dilution onto 3 × 10 ml of LST Broth
• Indole Kovacs Reagent double strength, 3 × 1 ml of sample without dilu-
• Laboratory incubator set to 37 ± 1°C tion onto 3 × 10 ml of LST Broth single strength
• Water bath or laboratory incubator set to 44 ± 1°C and 3 × 10 ml of 10−1 dilution onto 3 × 10 ml of
• Laboratory incubator set to 30 ± 1°C (optional for LST Broth single strength. If the food is acid adjust
total coliforms count only) the pH of the three double strength LST tubes to
6.8 after the inoculation (with sterile NaOH).
For liquid samples with low count it is also possi-
9.3.2 Procedure ble to apply a MPN single dilution test, inoculating
5 × 10 ml aliquots of the sample without dilution
A general flowchart for the enumeration of total colif- onto 5 × 10 ml of LST Broth double strength. If
orms and presumptive E. coli in foods using the Most the food is acid adjust the pH of the five double
Probable Number (MPN) methods ISO 4831:2006 strength LST tubes to 6.8 after the inoculation
and ISO 7251:2005 is shown in Figure 9.2. (with sterile NaOH).
Before starting activities, carefully read the guide- b) Incubation for presumptive test (ISO 4831:2006
lines in Chapter 4, which deals with all details and care and 7251:2005): Incubate LST tubes at
required for performing MPN tests. The procedure 37 ± 1°C/24 ± 2 h. Examine tubes and record reac-
described below does not present these details, as they tions at 24 ± 2 h for gas (displacement of medium
are supposed to be known to the analyst. in fermentation vial or effervescence when tubes are

7007TS-DASILVA-Book.indb 97 11/26/2012 11:15:24 AM


-1 -2 -3
10 10 10
Homogenization 1ml 1ml

9ml 9ml
SPW SPW

25g of sample +
225ml of Saline Peptone Water (SPW)

1ml 1ml 1ml 1ml 1ml 1ml 1ml 1ml 1ml

PRESUMPTIVE
TEST
Lauryl Sulfate Tryptose
(LST) broth (10ml)

o
37±1 C/24±2h - 48±2h

Tubes with growth and gas production

1 loopful 1 loopful

PRESUMPTIVE E. coli TOTAL COLIFORMS TEST


E. coli TEST
E. aerogenes

E.coli (EC) Broth Brilliant Green Bile Broth (BGB) 2%


44±1oC/24±2h 37±1oC/24±2h - 48±2h
Water bath
BGB tubes with growth and gas production
1 loopful
Tubes with growth and gas
TOTAL COLIFORMS
MPN/g

Tryptone (Tryptophane) Broth


o
44±1 C/48±2h

INDOLE TEST

Tubes with positive results

PRESUMPTIVE E.coli
MPN/g

Figure 9.2 Scheme of analysis for the enumeration of total coliforms and presumptive E. coli in foods using the Most Probable Number
(MPN) methods ISO 4831:2006 and ISO 7251:2005.

7007TS-DASILVA-Book.indb 98 11/26/2012 11:15:24 AM


Total and thermotolerant coliforms and Escherichia coli 99

gently agitated). Re-incubate gas-negative tubes for d.2) Indole test at 44°C: From each EC tube show-
an additional 24 h and examine and record reac- ing gas (in 24 or 48 h of incubation) inocu-
tions again at 48 ± 2 h. Perform confirmed test on late a tube of Tryptone (Tryptophane) Broth.
all presumptive positive (gas) tubes. Incubate the tubes at 44 ± 1°C/48 ± 2 h and
Note b.1) When performing only the total coliform test for indole production: Add 0.5 ml of
count (ISO 4831:2006) it is possible to choose the Indole Kovacs Reagent to each tube of
between two incubation temperatures, 30 ± 1°C
or 37 ± 1°C (30 ± 1°C is indicated for milk
Tryptone (Tryptophane) Broth, mix well and
and milk products). The temperature is subject examine after 1 min. A red color in the alco-
of agreement between parties concerned. The holic phase (surface of the liquid) indicates
incubation time for double strength LST tubes indole production.
is 24 ± 2 h without re-incubation of negative Consider as presumptive E. coli the cultures
tubes. For single strength LST tubes the nega-
showing gas in EC Broth at 44°C and indole
tive tubes are re-incubated for an additional
24 ± 2 h. production in Tryptone (Tryptophane) Broth
c) Confirmed test for total coliforms (ISO at 44°C. Calculate most probable number
4831:2006): From each double strength LST tube (MPN) following the instructions described
showing gas after 24 ± 2 h of incubation, transfer in Chapter 4, using a MPN table.
a loopful of the suspension to a tube of Brilliant
Green Bile Broth (BGB).
From each single strength LST tube showing gas 9.4 Most probable number (MPN)
after 24 ± 2 h or 48 ± 2 h of incubation, transfer method APHA/AWWA/WEF 2005
a loopful of the suspension to a tube of Brilliant for total and thermotolerant
Green Bile Broth (BGB). coliforms and E. coli in water
Incubate the BGB tubes at 37 ± 1°C/24 ± 2 h and
examine for gas production, indicative of a posi- Method of the American Public Health Associa-
tive result. Re-incubate gas-negative tubes for an tion (APHA), American Water Works Association
additional 24 h and examine and record reactions (AWWA) & Water Environment Federation (WEF),
again at 48 ± 2 h. Calculate most probable number as described in Section 9221 of the Standard Methods
(MPN) following the instructions described in for the Examination of Water and Wastewater (Hunt and
Chapter 4, using a MPN table. Rice, 2005).
Note c.1) If the LST tubes were incubated at 30 ± 1°C in the
previous step, use the same temperature to incubate
the BGB tubes.
9.4.1 Material required for analysis
d) Test for presumptive E. coli (ISO 7251:2005)
d.1) Test for growth and gas production in EC
Preparation of the sample and serial
Broth at 44°C: From each LST tube show-
dilutions
ing gas, transfer a loopful of the suspension
• Magnesium Chloride Phosphate Buffer (Dilution
to a tube of E. coli Broth (EC). Incubate the
Water)
EC tubes at 44 ± 1°C/24 ± 2 h (water bath
• Dilution tubes containing 9 ml Magnesium Chlo-
or incubator). Examine the tubes for gas
ride Phosphate Buffer (Dilution Water)
production and re-incubate the gas-negative
tubes for an additional 24 h ± 2 h.
Note d.1) For some milk products (e.g. casein), the Dur-
Total and thermotolerant coliforms count
ham tube may stick to the bottom of the LST • Lauryl Sulfate Tryptose (LST) Broth tubes (10 ml)
tubes. If, after 48 h incubation period, growth • Brilliant Green Bile (BGB) Broth 2% with Durham
is observed but no gas production, inoculate tubes
this LST culture into EC broth. • E. coli (EC) Broth with Durham tubes
Note d.2) For double strength LST tubes, the opacity or
• Pure culture E. coli
cloudiness may difficult the gas observation. In this
case inoculate this LST culture into EC broth. • Pure culture E. aerogenes
Note d.3) For live shellfish, an incubation time of not • Laboratory incubator set to 35 ± 0.5°C
more than 24 ± 2 h may be used. • Water bath set to 44.5 ± 0.2°C

7007TS-DASILVA-Book.indb 99 11/26/2012 11:15:24 AM


Figure 9.3 Scheme of analysis for the enumeration total and thermotolerant coliforms and E. coli in water using the Most Probable Number
(MPN) method APHA/AWWA/WEF 2005 (Hunt and Rice, 2005).

7007TS-DASILVA-Book.indb 100 11/26/2012 11:15:24 AM


Total and thermotolerant coliforms and Escherichia coli 101

Thermotolerant coliforms and E. coli count c) Confirmed test for total coliforms: From each
(EC-MUG method for water) (optional) gassing LST tube, transfer a loopful of suspen-
• E. coli Broth with 4-methylumbelliferyl-β-D- sion to a tube of Brilliant Green Bile Broth (BGB).
glucuronide (EC-MUG) Incubate BGB tubes at 35 ± 0.5°C/24 ± 2 h and
• Water bath set to 44.5 ± 0.2°C examine for gas production, indicative of a posi-
tive result. Re-incubate gas-negative tubes for an
E. coli count (indole method for water) additional 24 h and examine and record reactions
(optional) again at 48 ± 2 h. Calculate most probable number
• Tryptone (Tryptophane) Broth (MPN) following the instructions described in
• Indole Kovacs Reagent Chapter 4, using a MPN table.
• Water bath set to 44.5 ± 0.2°C Note c.1) Alternative procedure only for polluted water
known to produce positive results consistently:
If all LST tubes are positive in two or more con-
9.4.2 Procedure secutive dilutions within 24 h, submit to the
confirmed test for coliforms only the tubes of
the highest dilution (smallest sample aliquots)
A general flowchart for the enumeration of total and in which all tubes are positive and the positive
thermotolerant coliforms and E. coli in water using tubes of the subsequent dilution. For LST tubes
the Most Probable Number (MPN) method APHA/ in which the positive result is produced only after
AWWA/WEF 2005 is shown in Figure 9.3. 48 h, all should be submitted to the confirmed test
Before starting activities, carefully read the guide- for coliforms.
lines in Chapter 4, which deals with all details and care d) Confirmed test for thermotolerant (fecal) col-
required for performing MPN tests. The procedure iforms (EC method): From each gassing LST
described below does not present these details, as they tube, transfer a loopful of the suspension to a
are supposed to be known to the analyst. tube of E. coli (EC) Broth. Incubate EC tubes at
44.5 ± 0.2°C/24 ± 2 h in a water bath. Examine
a) Preparation of the samples and inoculation: tubes for growth and gas production, indicative of
Homogenize the sample by shaking vigorously a positive result. Calculate most probable number
about 25 times. For potable water apply a MPN (MPN) following the instructions described in
single dilution test, inoculating 5 × 20 ml aliq- Chapter 4, using a MPN table.
uots of the sample onto 5 × 10 ml of Lauryl Tryp- Note d.1) Place all the EC tubes in the water bath within
tose Broth (LST) triple strength (or 5 × 20 ml of 30 min after inoculation. Maintain a sufficient
water depth in the water bath incubator to immerse
LST double strength LST). It is also possible to
the EC tubes to upper level of the medium. Incu-
inoculate 10 × 10 ml aliquots of the sample onto bate an EC tube of E. coli and an EC tube of E.
10 × 10 ml of Lauryl Tryptose Broth (LST) double aerogenes in the same water bath as positive and
strength. negative control.
For non-potable water select three appropriate e) Completed test for thermotolerant coliforms
dilutions and apply a MPN multiple dilution test, and E. coli (EC-MUG method): From each gassing
inoculating five tubes of LST per dilution. Fol- LST tube, transfer a loopful of the suspension to
low the orientation of the Table 4.1 (Chapter 4) to a tube of E. coli Broth with 4-methylumbelliferyl-
select the dilutions according the expected level of β-D-glucuronide (EC-MUG). Incubate EC-
sample contamination by coliforms. MUG tubes at 44.5 ± 0.2°C/24 ± 2 h in a water
b) Incubation: Incubate LST tubes at bath.
35 ± 0.5°C/24 ± 2 h. Examine tubes and record Note e.1) Place all the EC-MUG tubes in the water bath
reactions at 24 ± 2 h for gas (displacement of within 30 min after inoculation. Maintain a suf-
medium in fermentation vial or effervescence when ficient water depth in the water bath incubator
to immerse the EC tubes to upper level of the
tubes are gently agitated). Re-incubate gas-negative
medium. Incubate an EC-MUG tube of a MUG
tubes for an additional 24 h and examine and record positive strain of E. coli, an EC-MUG tube of
reactions again at 48 ± 2 h. Perform confirmed test Klebsiella pneumoniae (glucuronidase negative)
on all presumptive positive (gas) tubes. and an EC-MUG tube of E. aerogenes (do not

7007TS-DASILVA-Book.indb 101 11/26/2012 11:15:25 AM


102 Microbiological examination methods of food and water

growth at 44.5°C) in the same water bath as 9.5.1 Material required for analysis
controls.
Thermotolerant coliforms: Examine EC-MUG Preparation of the sample and serial
tubes for growth and gas production, indicative of dilutions
a positive result for thermotolerant coliforms. Cal- • Diluent: 0.1% Peptone Water (PW) or Butterfield’s
culate most probable number (MPN) following the Phosphate Buffer
instructions described in Chapter 4, using a MPN • Dilution tubes containing 9 ml 0,1% Peptone Water
table. (PW) or Butterfield’s Phosphate Buffer
E. coli: Examine al EC-MUG tubes exhibiting • Observation: consult Annex 2.2 of Chapter 2 to
growth for fluorescence using a long-wavelength check on special cases in which either the type or
UV lamp (366 nm, preferably six watts). The volume of diluent vary as a function of the sample
presence of bright blue fluorescence is consid- to be examined.
ered a positive result for E. coli. Calculate most
probable number (MPN) following the instruc- Coliform count
tions described in Chapter 4, using a MPN • Sterile, empty 20 × 100 mm Petri dishes
table. • Violet Red Bile (VRB) Agar
f ) Completed test for E. coli (indole method): From • Brilliant Green Bile Broth (BGB)
each gassing LST tube, transfer a loopful of the sus- • Laboratory incubator set to 35 ± 1°C (32 ± 1°C for
pension to a 5 ml tube of Tryptone (Tryptophane) milk and dairy products)
Broth. Incubate tubes at 44.5 ± 0.2°C/24 ± 2 h in
a water bath.
Note f.1) Place all the tubes in the water bath within 9.5.2 Procedure
30 min after inoculation. Maintain a sufficient
water depth in the water bath incubator to
A flowchart for the enumeration of total coliforms in
immerse the tubes to upper level of the medium.
Incubate a tube of an indole positive strain of foods using the plate count method APHA 2001 is
E. coli, a tube of E. cloacae (indole negative) and shown in Figure 9.4.
an uninoculated tube in the same water bath as Before starting activities, carefully read the guide-
controls. lines in Chapter 3, which deals with all details and care
After incubation add 0.2 to 0.3 ml of the required for performing plate counts of microorganisms,
Indole Kovacs Reagent to each 5 ml tube of from dilution selection to calculating the results. The
Tryptone (Tryptophane) Broth and examine for procedure described below does not present these details,
appearance of a deep red color in the upper layer as they are supposed to be known to the analyst.
(indole test positive). The presence of red color is
considered a confirmative result for E. coli. Calcu- a) Preparation of the samples and inoculation.
late most probable number (MPN) following the For preparation of the samples and serial dilutions
instructions described in Chapter 4, using a MPN (10−1, 10−2 and serial subsequent) follow the proce-
table. dures described in Chapter 2. Select three appropri-
ate dilutions of the sample and inoculate in Violet
Red Bile (VRB) Agar. Use the pour plate technique
9.5 Plate count method APHA 2001 and, after complete solidification of the medium,
for total coliforms in foods cover the surface with a 5–8 ml thick layer of the
same medium.
Method of the American Public Health Association For processed foods expected to contain sub-
(APHA), as described in Chapter 8 of the 4th Edition lethally damaged or stressed coliforms (unable to
of the Compendium of Methods for the Microbiologi- growth and form typical colonies on VRB), include
cal Examination of Foods (Kornacki and Johnson, a recovery step: pour plate in a non-selective agar
2001) and Chapter 7 of the Standard Methods for (e.g. Trypticase Soy Agar, TSA), allow 2 ± 0.5 h of
the Examination of Dairy Products (Davidson et al., recovery at room temperature, and then overlay the
2004). TSA layer with VRB.

7007TS-DASILVA-Book.indb 102 11/26/2012 11:15:25 AM


Total and thermotolerant coliforms and Escherichia coli 103

-1 -2 -3
10 10 10
Homogenization 1ml 1ml

9ml 9ml
PW PW

25g of sample +
225ml of Peptone Water (PW)
1ml 1ml 1ml

VRB Violet Red Bile (VRB) Agar VRB


(pour plate with overlay)

o
35±1 C/18-24h
or
32±1o C/24±2h
(dairy products)

TOTAL COLIFORMS
CFU/g

Figure 9.4 Scheme of analysis for the enumeration of total coliforms in foods using the plate count method APHA 2001 (Kornacki and
Johnson, 2001).

Note a.1) The Chapter 7 of the Standard Methods for the d) Calculation of the results. Calculate number of
Examination of Dairy Products (Davidson et al., total coliforms/g of sample based on percentage
2004) recommends to overlay the TSA layer with
of colonies tested that are confirmed as total col-
fortified VRB (VRB containing double strength of
bile salts, neutral red and crystal violet). iforms. Example: The presumptive count obtained
with 10−4 dilution of sample was 65 and four of five
b) Incubation and colony counting. Incubate the colonies tested were confirmed (80%). The number
plates in an inverted position at 35 ± 1°C/18–24 h of coliforms cells/g of food is 65 × 0.8 × 104 =
(32 ± 1°C/24 ± 2 h for milk and dairy products). 520,000 CFU/g = 5.2 × 105 CFU/g.
Select plates with 15–150 colonies and count only
the typical coliforms colonies on the VRB medium:
red-purple, 0.5 mm or greater in diameter, sur- 9.6 References
rounded by a reddish halo characteristic of the pre-
cipitation of the bile salts. AOAC International (2010) Rapid Methods Adopted as AOAC
Official MethodsSM. [Online] Available from: http://www.aoac.
c) Confirmation: Select five suspicious colonies org/vmeth/oma_testkits.pdf [Accessed 26th April 2011).
and inoculate each colony into a tube of Brilliant Brenner, D.J. & Farmer III, J.J. (2005) Family I. Enterobacteriaceae.
Green Bile Broth (BGB). Incubate BGB tubes at In: Brenner, D.J., Krieg, N.R. & Staley, J.T. (eds). Bergey’s Manual
35 ± 0.5°C/24 ± 2 h (32 ± 1°C for milk and dairy of Systematic Bacteriology. Volume 2. 2nd edition. New York,
products) and examine for gas production. Consider Springer Science+Business Media Inc. pp. 587–607.
Davidson, P.M., Roth, L.A. & Gambrel-Lenarz, S.A. (2004)
confirmed cultures exhibiting gas without surface
Coliform and other indicator bacteria. In: Wehr, H.M. & Frank,
pellicle. If gas and pellicle are observed, perform J.F (eds). Standard Methods for the Examination of Dairy Products.
Gram stain and oxidase test. Consider confirmed the 17th edition. Washington, American Public Health Association.
cultures of Gram negative rods, oxidase negative. Chapter 7, pp. 187–226.

7007TS-DASILVA-Book.indb 103 11/26/2012 11:15:25 AM


104 Microbiological examination methods of food and water

FAO/WHO (1979) Report of a joint FAO/WHO Working Group on International Organization for Standardization (2005) ISO
Microbiological Criteria for Foods. Food and Agricultural Organi- 7251:2005. Microbiology of food and animal stuffs – Horizontal
zation and the World Health Organization. Report number: method for the detection and enumeration of presumptive Escherichia
Document WG/Microbiol./79/1. coli – Most probable number technique. Geneva, ISO.
Feng, P.C.S. & Hartman, P.A. (1982) Fluorogenic assay for immedi- International Organization for Standardization (2006) ISO
ate confirmation of Eschericihia coli. Applied and Environmental 4831:2006. Microbiology of food and animal feeding stuffs – Hori-
Microbiology, 43, 1320–1329. zontal method for the detection and enumeration of coliforms – Most
Horwitz, W. & Latimer, G.W. (eds) (2010) Official Methods of Anal- probable number technique. Geneva, ISO.
ysis of AOAC International. 18th edition., revision 3. Gaithersburg, Kornacki, J.L. & Johnson, J.L. (2001) Enterobacteriaceae, coliforms,
Maryland, AOAC International. and Escherichia coli as quality and safety indicators. In: Downes,
Hunt, M.E. & Rice, E.W. (2005) Microbiological examination. In: F.P. & Ito, K. (eds). Compendium of Methods for the Microbio-
Eaton, A.D., Clesceri, L.S., Rice, E.W. & Greenberg, A.E. (eds). logical Examination of Foods. 4th edition. Washington, American
Standard Methods for the Examination of Water & Wastewater. Public Health Association. Chapter 8, pp. 69–82.
21st edition. Washington, American Public Health Association Wehr, H.M. & Frank, J.F (eds) (2004) Standard Methods for the
(APHA), American Water Works Association (AWWA) & Water Examination of Dairy Products. 17th edition. Washington, Ameri-
Environment Federation (WEF). Part 9000, pp. 9.1–9.169. can Public Health Association.

7007TS-DASILVA-Book.indb 104 11/26/2012 11:15:25 AM

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