Professional Documents
Culture Documents
It gives me immense pleasure and honor to compile and present the booklet on the
Bioinformatics National Certification (BINC) examination and the DBT-BINC-JRF programme
on behalf of the Department of Biotechnology (DBT), Government of India. The booklet is
designed with an objective to serve as a single point reference to all the stakeholders of the
BINC examination in general and the BINC fellowship awardees and their imminent
supervisors in particular. The BINC examination was introduced in 2005 to identify and certify
professionals in the area of Bioinformatics as the subject has emerged as an independent
discipline over the years and is assuming an increasingly important role in the Life Sciences
research in the post-genomic era.
There are two major aspects of conducting the BINC examination viz. academic and
administrative. The academic component has been spearheaded and mentored by Prof. A. S.
Kolaskar (Former Vice Chancellor, University of Pune; Founder Director, Bioinformatics Centre
and Chairman, BINC National Coordination Committee), and the esteemed members of the
BINC National Coordination Committee. The Coordination Committee has been the driving
force in setting and maintaining high standards of the BINC examination. This examination is
novel and unique in the sense that it employs a three-tier system including an objective,
subjective and practical examination to evaluate the knowledge and skill set of the candidates.
The Bioinformatics community in India has been extremely supportive by contributing as
paper setters, moderators, and evaluators.
With a modest beginning as a Distributed Information Center under the BTIS network of
DBT in the year 1987, the Bioinformatics center has evolved as a Center of Excellence. Despite
the decline in the faculty strength in 2008-09, the centre is able to embark on various activities
mainly due to wholehearted support extended not only by the staff of the centre and but also
the associated faculty members, some of who also served as the Observers for BINC examination
held at various examination centers. Coordinating and conducting any examination at the
national level is a huge responsibility and demands the cooperation of many. The administrative
support extended by the various sections of University of Pune and the SET unit in particular
is acknowledged for timely help. Contributions of erstwhile coordinators of BINC examinations,
Prof. Indira Ghosh, Dr. Chaitanya Hiremath and Late Dr. V. Shankar are gratefully acknowledged.
Dr. S.R.R. Reddy deserves a special mention for adding value to various aspects of BINC
examination, specially the post-examination analyses, which served as a feedback for
subsequent examinations. I appreciate the wide range of contributions made by my colleague,
Dr. Sangeeta Sawant. The BINC website has been developed and is maintained by our scientific
and technical staff members. The actors behind the scene who worked relentlessly for making
each of the BINC examination a success are all the members of our staff.
I am short of words to thank Dr. M. K. Bhan, Secretary, DBT, for the message specially
written for this booklet. I am grateful to Dr. A. D. Adsool, Vice Chancellor (Acting), University
of Pune, for supporting various activities of the center. The preamble written by
Prof. A. S. Kolaskar reveals the genesis of the BINC examination. Foreword to the booklet
written by Dr. T. Madhan Mohan (Advisor, DBT), underlines the continued support for
strengthening Bioinformatics activities in India.
I urge the reader to help DBT in popularization of BINC examination by sharing the
information with students, colleagues and society at large. Your suggestions, if any, to improve
the readability of the booklet are most welcome.
Frequency of BINC
BINC examination is conducted annually in the first half of the calendar year.
Eligibility
There is no age limit to appear for the BINC examination. Also, there is no limit on the
number of attempts to qualify for BINC certification. However, candidates who have cleared
BINC examination in a maximum of three attempts only are eligible for BINC research
fellowship, if other criteria are satisfied. (See FAQs on pages 7-8 and the section on ‘DBT-
BINC-JRF Award: Terms and Conditions’ on pages 9-11.)
Examination Centers
BINC examination was held in 2009 at the seven centers listed below:
DBT-BINC-JRF award is a corollary of the BINC examination being conducted by the DBT.
This fellowship will be awarded to top 15 BINC candidates in the merit list who meet the
following criteria:
• Indian national with a post graduate degree in Science, Technology, Pharmacy, Engineering,
Agriculture, Veterinary Science and Medicine (including Ayurveda and Homeopathy) etc.,
who are interested in pursuing research leading to Ph.D. degree in Bioinformatics/
Computational Biology in any recognized Indian university/institute.
• Candidates receiving the BINC fellowship will have to satisfy all the rules/requirements of
the university/institute where they are enrolled in the Ph.D. programme hereafter referred
to as ‘host institution’. The research supervisor should tacitly certify that the fellow would
carry out research in the area of Bioinformatics/Computational Biology.
• Candidates should join the host institution under the BINC fellowship programme within
the time limit prescribed by the coordinating institution, namely, University of Pune, Pune.
No TA/DA will be admissible for joining the host institution.
• The DBT-BINC research fellowship is awarded initially for a period of two years and
extended on yearly basis thereafter for another three years, based on the progress, overall
importance of the research project of the fellow and recommendations of the research
supervisor as well as a monitoring expert committee. The evaluation and recommendation
for the extension of the fellowship will be made by the host institution as per their internal
procedures and guidelines.
• Each fellow is entitled to a fellowship of Rs. 12,000/- per month (during the first and second
year) and 14,000/- per month (during the third and subsequent years). The fellowship
payable to each candidate would be at par with CSIR/UGC JRFs and SRFs. In addition, the
Fellow is also entitled to HRA (as applicable at the host institution) and other benefits
including medical allowance of Rs. 250/- per month as per DBT norms.
• Each fellowship would also carry a research contingency grant of Rs. 30,000/- per annum.
The amount is primarily meant for meeting the cost of consumables and minor equipment
required (computer peripherals/ license fees for databases and software) for the research
work of the Fellow. However, with the consent of the research supervisor, a portion of the
grant, not exceeding Rs. 10,000/- per annum, may be utilized towards the cost of attending
major conferences/ symposia/seminars/workshops held in India in the area related to
research of the fellow. The same amount can also be utilized for payment of the registration
fees of online international workshop/international conference. The grant should not be
utilized for international travel or for meeting the cost of attending conferences held abroad.
• Certification by the Guide and HOD stating that the student was working full time as JRF/
SRF in the Department and has not availed leave for more than 30 working days in the
calendar year is also required.
• The fellows should devote full time to their research and training for which they have been
awarded the fellowships. They shall abide by the rules and regulations of the host institutions
applicable to research fellows.
• The fellows will be entitled to 30 days leave per year with fellowship. Any period of absence/
leave beyond 30 days in a year will be treated as leave without fellowship.
• The candidate who has been awarded the DBT-BINC Junior Research Fellowship must
convey his / her acceptance of the same within six weeks from the date of award. Otherwise,
it would be awarded to the next candidate in the order of merit. However, the fellowship
offer, if accepted by a candidate shall remain valid for a period of one year, within which
he/she must avail the fellowship and subsequently join a Ph.D. programme.
• Bioinformatics Centre, University of Pune, Pune will coordinate and administer the
implementation of the fellowship programme on behalf of the Department of Biotechnology,
Government of India.
• The supervisors should provide their details along with those of the candidate at the time
of registration. See the ‘DBT-BINC-JRF Data Sheet/Candidate Information Form’.
• The research supervisor should ensure that the fellow would carry out research in the area
of Bioinformatics/Computational Biology and provide an endorsement letter to this effect.
• In all the publications resulting out of the research work carried out during the period of
the fellowship, the DBT should be acknowledged for support through the award of the
fellowship.
• Upon receiving the award letter, the candidate needs to select his/her research supervisor
from a University/Institute/Centre where he/she can register for Ph.D. In cases where
there is a separate Ph.D. admission procedure of the institution, candidates have to go
through that procedure.
• The fellowship is activated only when the candidate, after fulfilling all the requirements,
sends his biodata, duly filled DBT-BINC-JRF Data Sheet/ Candidate Information Form (in
the format given on page 12) and joining report through the host institution to the
Coordinator, DBT-BINC-JRF programme.
• The candidate who has been awarded the BINC Junior Research Fellowship must convey
his / her acceptance of the same within six weeks from the date of award. Otherwise, it
would be awarded to the next candidate in the order of merit. However, the fellowship
offer, if accepted by a candidate shall remain valid for a period of one year, within which
he/she must avail the fellowship and subsequently join a Ph.D. programme.
1. Certified that the amount of Rs. ______________ has been utilized on the fellowship and
contingency for which it was sanctioned and that the balance of Rs.______________
remaining unutilized at the end of the year has been surrendered to Govt. (vide
No._________dated____________)/will be adjusted towards the grants-in-aid payable
during the next year _________.
2. Certified that I have satisfied myself that the conditions under which the grants-in-aid
was sanctioned have been duly fulfilled and that I have exercised the following checks to
see that the money was actually utilized for the purpose for which it was sanctioned.
1. Cash Book
2. Ledger
3.
4.
5.
Place:
Date:
Date of Joining:
Institute / University:
Department:
Expenditure details:
Month Fellowship House Rent Medical Total Rs.
Allowance Allowance
April
May
June
July
August
September
October
November
December
January
February
March
Total Fellowship Rs.
Contingency Expenses Rs.
Total Expenditure Rs.
Grant Released
Total Expenditure Rs.
Balance Rs.
Telephone: 020-25692039
020-25690195
Fax: 020-25690087
URL: http://bioinfo.ernet.in
http://bioinfo.ernet.in/binc
Paper I (Basic)
Subject: Biology
Cell Biology & Genetics
• Basic aspects of prokaryotic and eukaryotic cells (plant and animal cells); membranes
and cellular compartments, cell organelles, structure and function.
• Cell motility and shape: cytoskeletal elements, cilia and flagella; motor proteins.
• Cell-cell interactions: Intercellular junctions.
• Photosynthesis, transportation of proteins in cells, transpiration, respiration.
• Cell cycle and its regulation; events during mitosis and meiosis.
• Mendelian principles of inheritance, sex linked inheritance.
• Concept of linkage, linkage maps and recombination.
• Mutations – molecular, gene/point and chromosomal types.
• Phenotype and genotype relationships, role of environment, from gene to phenotype,
gene interactions. Study of quantitative traits.
• Genetics of populations, genetics and evolution.
• Concepts of generation of diversity and specificity in immune system; Immunological
methods.
Molecular Biology
• Prokaryotic genome organization and structure.
• Prokaryotic gene expression, factors involved in gene regulation.
• Eukaryotic genome organization and structure, Mechanism of gene expression in
eukaryotes, Basic mechanism of transcription and translation.
• Mechanisms by which genome undergoes changes, recombination, mutation, inversion,
duplication, transposition.
Biochemistry
• Carbohydrates and lipids, their importance in cells.
• Proteins: Amino acids and peptides; primary, secondary, tertiary and quaternary
structures.
Paper I (Basic)
Subject: Basic Mathematics, Statistics, Physics & Chemistry
• Functions and Graphs: Functions, Relations, notation and representation. Graphs. Review
of basic functions. Functions of several variables.
• 2D coordinate geometry: Equations of line, circle, ellipse, parabola, hyperbola.
• 3D geometry: Equations of sphere and cone.
• Basic trigonometric functions.
• Matrix algebra: Addition, subtraction, multiplication, transpose, inverse.
• Introduction to principles of statistical sampling from a population, random sampling
• Frequency distributions and associated statistical measures, Probability distributions –
normal and binomial.
• Concept of pH, pK, chemical equilibrium, Henderson-Hasselbach equation, structure
of water, chemical forces, hydrophilic and hydrophobic forces, electronic structure of
molecules, chemical bonds, ionic bonds, covalent bonds, hydrogen bonds and coordinate
bonds.
• First law of thermodynamics, isothermal process, entropy and second law of
thermodynamics, reversible and irreversible processes; free energy and chemical
potential; Gibbs free energy.
Paper I (Basic)
Subject: Information Technology
Concepts in Computing
• Overview and functions of a computer system.
• Input and output devices.
• Storage devices: Hard Disk, Diskette, Magnetic Tape, RAID, ZIP devices, Digital Tape,
CD-ROM, DVD, etc (capacity and access time).
• Main Circuit Board of a PC: Chips, Ports, Expansion slots, etc.
• Memory: Register, buffer, RAM, ROM, PROM, EPROM, EEPROM (comparison).
Paper II (Advanced)
Subject: Biology
Cell Biology & Genetics
• Vesicular transport and protein traffic in cells.
• Second messenger, different mechanisms of signal transduction, concepts in signal
network, molecules involved in various signaling pathways such as G-protein coupled
receptors, protein kinases, calcium binding proteins.
• X-linked and autosomal diseases, mitochondrial related disease, QTL methods for
diagnostics.
• Extra chromosomal inheritance.
• Immune response, autoimmune disorders, ELISA method.
• Molecular genetics and genetic disorders.
Molecular Biology
• Genome organization, Initiation, elongation and termination of transcription – template
& enzyme properties, Promoter & regulatory sequences.
• Methods for studying gene expression and regulatory sequences, large-scale expression
analysis, use of microarrays.
• Genetic information transfer, details of regulation in eukaryotes & prokaryotes,
horizontal gene transfer.
• Operons – positive & negative regulation, Processing of RNA and Proteins - Transport
and Stability
• Organization of eukaryotic genome, Methods for studying variation and polymorphism
at genome level, PCR, northern, southern, western blotting, RFLP, Fingerprinting,
RAPDs, DNA and protein sequencing methods.
• Epigenetic mechanisms of inheritance and regulatory RNA molecules (RNA; miRNA,
siRNA), antisense RNA and their applications.
• GFP- Green Fluorescent Protein and application in Molecular Biology.
Paper II (Advanced)
Subject: Basic Mathematics, Statistics, Physics & Chemistry
• Sequence Analysis
o Protein and nucleic acid properties: e.g. Proteomics tools at the ExPASy server
and GCG utilities and EMBOSS.
o Metagenomics.
o Protein-protein interactions: databases such as DIP, PPI server and tools for
analysis of protein-protein interactions.
o ICTV Database, AVIS, VirGen, Viral genomes at NCBI, VBRC, VBCa, PBRC and
Subviral RNA database, Species 2000, TreeBASE etc.
o COG, KEGG.
• Drug design
Paper III
• Questions based on the syllabi of Papers I and II for the subjects of Bioinformatics & IT.