MiSeq Illustrated Parts List

RUO only

For reference only Information subject to change

 Contents
• Front panel assy
• Optical bench
• Ebox
• Front view comp.
• Fluidics
• Cables
• Mechanical
• Chiller
• Misc.
• Tools
• Parts not yet assigned to a slide
 Front Panel Assy.
LCD Screen 15023379S

Sipper console
Bezel assy. 15020380S

Door
Sensor/cable
(not shown)
15022965

PR2 bottle:
Left Front Cover: 15032217S Chiller door assy: 11230581
Door cable assembly: 15023154S 15033232S
(not shown)
 Layout Cont. (parts #s on next slide)
F1, Emissive
M3 sensor/cable M3 Focus
20042274 Mirror

S1, Camera 1
Red LED Camera Offset

Green LED
S2, Camera 2
Photo Diode

F8 Double
Bandpass F2 Emissive Flipper not
shown

A1 Aper. Not shown :

15030018 L1, S1 Focus
Chromatism
L8 Collimator L2 Focus

F3 Beam Splitter
M4
M1
Obj.
15019615S

F4 F5 Prism
 Optical Bench parts list

LED Assy: 20005895

F8 Double Bypass: 15021901S
F1: 15019701S
L8: 15022594S
L1/L2: 15034424S
M4: 15019623S
M3 Mirror (2 screws) 20025947
M3 Motor: 20032622
M3 sensor/cable: 20042274
S1/S2 Camera: 20031175 Camera1,
20031176 Camera 2
M1: 15019621
M1 Retainer: 15030965
F2: 15025408S
F3: 15019624S
F4: 15019622S
F4 Retainer: 15030961S
Compensator: 20042278
Objective: 15019615S
A1 Aper. : 15030018
 Existing E Box Included with Z motor assy. See
Mechanical slide 13

• Existing Ebox (RUO) SSD 1TB

20020676
• Existing SBC “AIMB-272 (BIOS)” EOL ~2024
20010733

• Disk Drive cover

(Rear Metal Plate)
15022182S
• Power Supply
20001836

Combo PCA board Ribbon Cable:

20034617 15019829S
Existing SBC and components:
Ebox cont.
20010733

UPGRADE KIT,MiSeq,RUO,HDD to
SSD 20020718

1 TB SSD (w/IMG)
Gstimg3.0.C25.20160405
MCS 2.6.2.1
20020634

MISEQ RUO 4.0 SW + SSD BIOS UPG

KIT
20042289
 WIN 10 Slides from TechCall

MN + Description What is in the kit Compatibility/Notes

MiSeq Win10 Upgrade – 2020-08-19 FRU Kit Update
Existing MiSeq SBC (AIMB-272 BIOS) Existing SBC (AIMB-272 BIOS) EOL but we have stock to support as a FRU for approximately 3 years.
MN 20010733 ASSY,SBC,MiniiTX, w/BIOS2.01,LAN2.1,MiSeq Compatible with MN 20042289 BIOS SSD (Upgraded Win10 instruments).
Compatible with MN 20045349 MiSeq RUO, SSD+CUST IMG, Win10 BIOS (Win10 FRU)
Existing MiSeq RUO Win7 SSD Kit 1TB SSD Used for Win7 instruments.
MN 20020634 MiSeq, RUO, SSD+CUST IMG Win7 Image v3.0.C25
MCSv2.6.2.1 + suite components

MiSeq RUO Win10 SSD Upgrade Kit 1TB SSD MiSeq Win10 SSD for RUO instruments with existing SBC MN 20010733.
MN 20042289 MISEQ RUO 4.0 SW + SSD BIOS UPG KIT Win10 Image v3.1.C02 Kit includes Win10 License sticker for Win10 Upgrade
v4.0 MiSeq Software Suite
Windows 10 License Sticker

MiSeq RUO Win10 SSD FRU (spare) 1TB SSD MiSeq Win10 SSD for RUO instruments with existing SBC MN 20010733.
MN 20045349 MiSeq RUO, SSD+CUST IMG, Win10 BIOS Win10 Image v3.1.C02 Kit does not include Win10 License sticker. Use kit as FRU for instruments previously
MSSI v4.0 SW Suite upgraded to Win10.

Existing MiSeq RUO EBox Existing E-Box for Win7 systems Contains existing SBC and imaged drives
MN 20020676 SPARE,MiSeq,RUO,E-BOX 1TB SSD, Win7 Image v3.0.C25 Can be upgraded to new SBC with:
• MN 20042810 SBC upgrade kit and
• MN 20042288 UEFI SSD

New SBC Upgrade Kit (AIMB-205 UEFI) New SBC (AIMB-205 UEFI) New MiSeq SBC kit to upgrade existing E-Box
MN 20042810 MiSeq SBC AIMB205 UPGRADE KIT Associated USB cables Compatible with MN 20042288 UEFI SSD in RUO instruments
Bracket New E-Box containing new SBC and UEFI SSD cut into manufacturing at SN M07372
Windows10 License Sticker

New SBC FRU (spare) (AIMB-205 UEFI) New SBC (AIMB-205 UEFI) Compatible with MN 20042288 UEFI SSD in RUO instruments
MN 20045090 SPARE, MiSeq SBC AIMB205 Windows10 License Sticker New E-Box containing new SBC and UEFI SSD cut into manufacturing at SN M07372

MiSeq RUO Win10 SSD Upgrade Kit & FRU 1TB SSD For instruments with New SBC (AIMB-205 UEFI)
MN 20042288 MiSeq RUO, SSD+CUST IMG, Win10 UEFI Win10 Image v3.2.C04 New E-Box containing new SBC and UEFI SSD cut into manufacturing at SN M07372
v4.0 MiSeq Software Suite

New E-Box FRU (spare) New E-Box Does not contain SSD. Compatible only with MN 20042288 UEFI SSD for RUO instruments.
MN 20045081 SPARE, MiSeq RUO, E-Box, Win10 Contains New SBC (AIMB-205 UEFI) New E-Box containing new SBC and UEFI SSD cut into manufacturing at SN M07372
Windows10 License Sticker
RUO specific compliance label
For Research Use Only. Not for use in diagnostic procedures.
MiSeq RUO Win10 Upgrade Kit and FRUs

WIN 10 Slides from TechCall

Service Scenarios: Which part(s) to order?

Service Scenario Order Part(s)

1 Perform a Win10 upgrade on a MiSeq RUO instrument with existing SBC: MiSeq RUO Win10 SSD Upgrade Kit
• MN 20010733 ASSY,SBC,MiniiTX, w/BIOS2.01,LAN2.1,MiSeq • MN 20042289 MISEQ RUO 4.0 SW + SSD BIOS UPG KIT
2 Replace hard drive on previously upgraded Win10 MiSeq RUO with SBC: MiSeq RUO Win10 SSD FRU (spare)
• MN 20010733 ASSY,SBC,MiniiTX, w/BIOS2.01,LAN2.1,MiSeq • MN 20045349 MiSeq RUO, SSD+CUST IMG, Win10 BIOS
3 Replace an SBC on a MiSeq RUO with Win7 OS Existing MiSeq SBC AIMB-272 (BIOS)
• MN 20010733 ASSY,SBC,MiniiTX, w/BIOS2.01,LAN2.1,MiSeq
4 Replace an SBC on a Win10 upgraded MiSeq RUO with BIOS drives and SBC AIMB-272 (BIOS) Existing MiSeq SBC AIMB-272 (BIOS)
• MN 20010733 ASSY,SBC,MiniiTX, w/BIOS2.01,LAN2.1,MiSeq
5 Replace hard drive on a MiSeq RUO with Win7 OS Existing MiSeq RUO Win7 SSD Kit
• MN 20020634 MiSeq, RUO, SSD+CUST IMG
6 Replace an E-Box on a MiSeq RUO instrument with Win7 OS Existing MiSeq RUO Ebox
• MN 20020676 SPARE,MiSeq,RUO,E-BOX
7 Upgrade SBC (requires Win10 upgrade) New SBC Upgrade Kit
• MN 20042810 MiSeq SBC AIMB205 UPGRADE KIT
MiSeq RUO Win10 SSD Upgrade Kit & FRU
• MN 20042288 MiSeq RUO, SSD+CUST IMG, Win10 UEFI
8 Replace a new SBC AIMB-205 UEFI (system must already have UEFI drives) New SBC FRU (spare)
• MN 20045090 SPARE, MiSeq SBC AIMB205
9 Replace an E-Box on a Win10 System with new SBC AIMB-205 UEFI New E-Box FRU (spare)
• MN 20045081 SPARE, MiSeq RUO, E-Box, Win10

For Research Use Only. Not for use in

diagnostic procedures. 9
Confidential. Do not distribute.
 Front View
A. Gimbal Bar
15028869S
B. Manifold: F
15031543S
C. TEC (not shown)
15051681S A
D. FCH 20015820
E. Selector valve V3:
20004531
(Selector valve
head with B
bracket)
F. Z stage V2: E
2000525S D
G. Button square:
15026439
Spring (not G
shown):
15023799
H. Manifold D
Springs:15023559
 Fluidics

Sipper Assy 15072617S/R Syringe black tipped Selector valve with bracket: 20004531
UHMWPE syringe:
20025010

Chiller assy(see chiller slide):

15041211S/R

Syringe pump assy. (syringe included) 20025890 Sipper elevator motor assy: 15024802S
Motor only: 15023434S
 Fluidics-tubing
Green inlet/manifold to valve Valve to chiller tubing:
common line: 15023095S 15033702S FC outlet to pump: 15026038S

PR2 Line: 15027391S Waste line to bottle:

15020836S
Camera power:
15025399S Cables
Camera USB cable:
15020033S
15028460S 50”

#1 Black USB
15028645S
#2 LVDS Display
15029176
#3 Back Light
15022117
Z stage cables included with Z stage assy #4 LCD USB
15020082
TEC as shown: 15051681S
(CABLE, THERMAL2FC-TEC 15026096S
Cables Cont.
Motor power cable: 15022907S

CABLE,DB25 MALE TO DB25 FEMALE,6‘ 15050118S

Flowcell door cable assy: 15023154S Y stage cable 15022892S Flow sensor cable: 15022949
 Cables Cont.
CABLE,PR2 ENGAGED SENSOR 20046800
 Cables Cont.
USB external: 15023182S
Motor power
cable: 15022907S

Camera power:
15025399S

Valve power cable:

15027051S

Camera USB cable: 15020033S LED power cable:

15025405S

MAIN TO IMAGING
MODULE CABLE
ASSEMBLY: 15022915S
 Mechanical
Y stage: 15032340S/R Motor power cable: 15022907S

SPARE, Z-STAGE WITH OBJECTIVE, PI CONTROLLER 20000525

Y stage cable 15022892S
 Chiller and subcomponents
Chiller TEC: 20019909 Thermistor: 10506S

Sensor cable assy: 20028344

TEC cable: 15020075S
 Chiller and Subcomponents Cont.
Chiller assy: 15072605S

RFID reader: 15028993S Thermistor: 10506S

PCA only/PR2 Sensor: 15032184S Chiller Door Gasket 15022863S
FCH TEC: 15051681S
Misc. Flowcell RFID: 15029460S

Rear fan assy: 15029939S

Air filter: 15023705S

• Ambient temperature
PM Kit: 10651S
Thermistor 15025186
Air filter
Syinge
Spare sippers
WIRELESS_KBD-MSE_COMBO 20010844
Misc.
 Tools
• Camera X adjuster 15024104
• Manifold alignment tool 15032247
• OTT 15029331S
• Vertical Cam. adustment tool and screw: 15023894s/15026291(nudger)
• Micrometer for chromatism: 15023706
• SF beaded FC: 15031390
• Torque Wrench, part # 15050210S
• 6-40 Fitting Adapter (small green fitting), part # 15045811S
• ¼-28 Fitting Adapter (larger brown/tan/blue fitting), part #15036791S
• Y stage alignment tool: 15029808S
• Interlock overide: 15029220
• fluidic wrench 15030491S
• field service alignment kit: 15026398S
Optical Bench layout (location reference)
 Parts not yet assigned
• 280428S SPARE, THREAD LOCKER, LOCTITE
• MISEQ, CABLE ASSY,RC-DOOR SENSOR 15022965
• 15034047 Loaner Miseq 2
• 15020955 Cable assembly waste full
• 15034552 accessory kit
• 10669S shipping crate packaging materials
– includes MN 15025184 (below) and MN 15029340 BRKT,STAGE LOCK,CLEAR (y-stage bracket)
• 15030491S fluidic wrench
• Manifold springs. Not available in SFDC 15023559, SPRING,COMP,0.125"OD X 0.313"L,SS.
 Updates Notes

• Added 4.0 SW PN and PR2 engaged sensor cable