Professional Documents
Culture Documents
1.
SYLLABUS FOR
M.Sc. IN
BIOTECHNOLOGY
Choice Based Credit System (CBCS)
Revised Date : 23th October, 2017
(24th BOS Meeting)
DEPARTMENT OF BIOTECHNOLOGY
Hamdard University, (Jamia Hamdard)
New Delhi 110 062
www.jamiahamdard.ac.in
www.jamiahamdard.edu
Department of Biotechnology, SCLS, Jamia Hamdard 1
INTRODUCTION
The Department of Biotechnology at Jamia Hamdard, New Delhi was established in the
year 1997 with a vision to be recognised as a Department of International repute with a
strong interdisciplinary research and teaching base in Plant and Animal Biotechnology
with active collaboration of industries and health-care institutions.
RESEARCH AREAS
INFRASTRUCTURE
Departmental Instrumentation Facility (DIF): DIF is well equipped with basic and
advanced instruments for training of students and research purpose. Weighing balance,
Ice flaking machine, Autoclaves, Millipore water system, Centrifuge, PCR,
spectrophotometer, Freeze dryer, Ultradeep freezer (-80˚C) Real time PCR, Rota
evaporator, GC-MS, Fluorescence Microscope, UV chamber, Shaking incubator and
Ultra-centrifuge.
Animal cell culture Facility: Animal cell culture facilities are well equipped with CO2
incubators (New Brunswick, Shell lab), water bath, cabinets and microscopes. We have
one well equipped dedicated cell culture facility for students training purpose. The
departmental cell culture facility is used by research scholars and faculty members.
Plant Tissue culture facility: A media preparation, sterilization, and storage area,
Laminar air flow chambers with HEPA filters, culture room with well-controlled
temperature, humidity, air circulation and light quality and duration is available for the
M.Sc. students and researchers. Besides, Plant Growth Chamber is available in the
Department. Hardening of in vitro raised plants is done in greenhouse by the
researchers.
Department of Biotechnology, SCLS, Jamia Hamdard 2
BSL-II-B2 laboratory: Our department also have BSL-II facility well equipped with
Biosafety level-II B2 cabinet (Haier), CO2 incubator and microscope for infectious disease
and clinical studies. This infrastructure is established from the project funds of Dr.
Mairaj Ahmed Ansari.
Apart from above mentioned departmental common facilities, each faculty of the
department have their own well-equipped laboratories required for research purpose.
Besides, we are also availing FACS (BD) and nano-LC-MS (Waters) facilities available in
the University.
Centre for Transgenic Plant Development as a unit of the Dept. of Biotechnology was
established in February 2004 with the research grants of CSIR (TMOP&M), Department
of Agriculture Cooperation and Farmers Welfare, Govt. of India and inaugurated by
Hon’ble Minister of Agriculture, Govt. of India, with a mandate to focus research in the
development of transgenic plants with improved yield and quality of produced as well as
development of DNA based finger prints for authentication of traditional medicines.
Various labs in the Centre have specialized equipments and facilities to work. It is
equipped with the state-of-the-art facilities to train Ph.D. and postdoctoral students and
to carry out research in various disciplines of Plant and Microbial Biotechnology. The
major R&D activities being pursued include cloning and characterization of novel genes
linked with tolerance to biotic and abiotic stresses and quality traits of medicinal and
crop plants, authentication and standardization of crude components of herbal
formulations and nano vehicle assisted gene delivery in plants. The thrust areas of
centre also include improving the quality of medicinal crops through genetic engineering
of metabolic pathway; miRNA and RNAi approaches, conservation of medicinal plants;
developments of easy, rapid, sensitive, cost effective method for aflatoxigenic mould
detection in the groundnut kernels and soil and identification and quantification of
aflatoxins in the food and feed. The centre always remains funded from Jamia Hamdard
and other government agencies such as DST, DBT, Department of AYUSH, CCRUM,
CSIR, ICMR, DRDO etc. for R&D projects carried out at the Centre. The consultancy
projects from biotech companies are also carried out in the centre.
The faculty members of the Department have been able to attract number of
extramurally funded research projects from various national and international funding
agencies such as DBT, DST, SERB, CSIR, ICAR, ICMR, DRDO, UGC, DoEn, ISM&H,
CCRUM, AYUSH and World Bank.
Department of Biotechnology, SCLS, Jamia Hamdard 3
The SAP scheme was initiated in 1963 by University Grants Commission keeping in view
the recommendations of the Education Commission to facilitate the selected number of
University Departments having some potential in research and teaching. The programme
is intended to encourage the pursuit of excellence and teamwork in advanced teaching
and research to accelerate the realization of international standards in specific fields.
The Department of Biotechnology, Jamia Hamdard was selected under UGC-SAP (DRS-I)
from 2011 to 2016 with a sanctioned amount of Rs. 65 Lakhs. Again in 2017, seeing the
potential in research and teaching, Department of Biotechnology recommended to UGC-
SAP (DRS-II) from 2018 to 2022 with a sanctioned amount of Rs. 116 Lakhs.
DST - FIST
ADMINISTRATION
TEACHING STAFF
Professor &
1 Dr. Pradip K. Chakraborti Molecular Biology
Head
Molecular Virology,
3 Dr. Pratima Ray Professor
Vaccinology
FACULTY PROFILES
DR. ALKA NARULA
Specialization : Plant Biotechnology
Email : anarula@jamiahamdard.ac.in, alka.narula@rediffmail.com
Mobile : 9899000130
Contact No. : 011-26059688 (Extn : 5505)
Dr. Javaid Ahmad Sheikh pursued doctoral studies from PGIMER, the top most
medical college of our country in the field of Peptide based vaccine development
against tuberculosis. I successfully emphasized the potential use of comparative
genomics and reverse vaccinology to predict the promiscuous vaccine candidates.
Apart from his challenging work, I undertook other projects too and deciphered
therapeutic efficacy of rAg85B and various other DNA based vaccines (J Immune
Based Ther Vaccines. 2011 Jun 26;9:40). My first stint with clinical translational
study was a collaborative study to distinguish Sarcoidosis from TB at molecular
level (J Infect. 2010 Jun;60(6):501-3). Thereafter, other translational works
included deciphering the serodiagnostic potential of some RD based peptides
(Diagn Microbiol Infect Dis. 2014 Apr;78(4):391-7) along with differentiating levels
of Immune complexes in TB and Sarcoidosis (Indian J Med Microbiol.
2017;35(2):290-292).
During my post-doctoral studies and there onwards, here at Jamia Hamdard, I
have been working in basic sciences and translational research regarding various
aspects of TB. It majorly includes the understanding of pathogen virulence and the
host mechanism to fight against the disease with translational aspect of discovery
of new diagnostics and drug repurposing (Front Microbiol. 2016;7:719). I am
currently exploring the moonlighting functions of mycobacterial proteome and how
it exploits host signalling to develop successful intracellular infection (FEBS Open
Bio. 2020; 10(1):70-85). My interests also include uncovering host mediated
defences that involves in-depth exploration of host innate and adaptive immune
responses against pathogens (Lancet Infectious Diseases. 2020, 20(3), 272-273).
Much recently, I have been involved in a collaborative programme to work on
current pandemic of COVID-19. I have been exploring the phylogenetics of global
SARS-CoV-2 strains to ascertain their evolution and relation with disease
dynamics (Infect Genet Evol. 2020 Apr 23:104330; Indian J Med Res. 2020
May;151(5):474-478).
Department of Biotechnology, SCLS, Jamia Hamdard 7
Professor (Dr.) Pradip K Chakraborti received his Ph.D. in the area of biological
sciences from Visva-Bharati (a Central University founded by Nobel laureate
Rabindranath Tagore), Santiniketan, India. He pursued his postdoctoral fellowship in
Canada and USA. On completion of his training in Molecular Biology/Biochemistry
under the Fogarty International program from the National Institutes of Health,
Bethesda, USA, Prof. Chakraborti joined the CSIR-Institute of Microbial Technology,
Chandigarh as a Senior Scientist in 1993. His work on the biology of Mycobacterium
tuberculosis involves notable contributions in understanding the involvement of a
natural transport system in the process of efflux mediated drug resistance,
characterization of a eukaryotic-type serine/threonine kinase that has a role in
mycobacterial cell division as well as peptidoglycan synthesis, and establishing peptide
deformylase as an essential enzyme. These works hold great promise in understanding
their fundamental mechanistic contributions as drug targets for screening/designing of
novel antimycobacterial compounds. His studies resulted in several publications in
reputed peer reviewed journals, patents and book chapters (see Research gate, Google
scholar etc.). Prof. Chakraborti is a recipient of the National Bioscience Award for
Career Development and the prestigious JC Bose National Fellowship. He is an elected
fellow of all three prominent Science Academies in India, the National Academy of
Sciences, Indian Academy of Sciences and the Indian National Science Academy. He is
an elected member of Guha Research Conference, a regular member of American
Society for Biochemistry and Molecular Biology, a Life member of Society for Biological
Chemists. He joined Jamia Hamdard as a Professor in the Department of
Biotechnology at School of Chemical and Life Sciences in 2017. Prof. Chakraborti has
guided many graduate (M.Sc/Ph.D) students over the years and is involved in different
administrative activities within or outside Jamia Hamdard.
(see https://en.wikipedia.org/wiki/Pradip_K._Chakraborti#Selected_bibliography).
OUTSOURCING STAFF
The school has a well-equipped Central Instrumentation Facility which is open to all
the students round the clock. It is equipped with state-of-art equipments. These
include Real Time PCR, Nanodrop spectrophotometer, Confocal Microscope, Atomic
absorption and Atomic emission spectrophotometers, inductively coupled plasma
spectrophotometer, ELISA reader, JASCO Spectro-polarimeter, Ultracentrifuges, HPLC
with integrator, Gas chromatograph, HPTLC, CHNS Analyser, Gamma and Beta
Scintillation Counters, Ultrascan, FT-IR, Luminescence Spectrometer, UV-VIS Double
Beam Spectrophotometer, Gel Documentation System and Semi-preparative HPLC.
Facilities for Internet and DTP are also available. All the Departments of the faculty are
connected to the server of the CIF.
The University library is among the oldest academic institutions established by the
great Visionary late Chancellor Hakeem Abdul Hameed Sb. (1908-1999) in 1977 at the
Tughlakabad Campus of the upcoming university. The Central library is housed in a
multi-tirer round building famous for its architectural design and beautiful
landscaping. It was renamed in 1992 as the Hakeem Mohammed Said Central library
(acronym HMSCL) on the name of the younger brother of the founder. The Jamia
Hamdard Library System consists of the HMS Central library and a number of School
libraries, such as School of Pharmaceutical education and Research Library, School of
Nursing Sciences and Allied Health Library, School of Unani Medical Education and
Research Library, School of Chemical and Life Sciences Library, School of Humanities
and Social Sciences Library, HIMSR Library and HILSR Library etc. holding good
number of Books and Periodicals.
The library system is well equipped with latest different Subject Books, Text Books,
Reference Books, Periodicals, Magazines, Databases, online electronic sources, etc.
concerning the various courses taught in the university. The collection is distinguished
for documents on bio-medical sciences, Medical sciences, Biotechnology, Food
Technology, Pharmacy, Management, Information Technology, Computer Sciene,
Islamic studies, medieval history and the traditional system of medicine (unani).‘The
six voyages of John Baptista Travernier’, published in the year 1678 is the oldest
printed book available in the library collection. The manuscript section besides 164 a
number of rare documents has the distinction of holding the only extant copy of al-
Mudkhal ila Ahkam al-Nujoom (a handwritten book on Astrology in Arabic language)
dated 3rd century of Hijri calendar (equivalent to 8th century AD). The salient features
of the collection at a glance:
Library services
Various conventional & non-conventional services are provided to the students and
scholars from 9.00 am to 9.00 pm all weekdays, timings are periodically extended
during Examinations.
Charging/Discharging of documents.
Book Bank service.
Inter-library loan service (through DELNET).
Documents delivery service (DDS).
Current awareness service (CAS)
Electronic theses & dissertation (ETD) service.
Short-range and long-range reference service.
Anti-plagiarism check (through web tools Urkund).
Member of National Digital Library.
Demonstration of commercial databases for procurement.
HERBAL GARDEN
Jamia Hamdard has the privilege of maintaining a herbal garden within the campus
which has about 150 species of important traditional medicinal and aromatic plants.
The main purpose of the garden is to carry out experimental work and initiate the ex-
situ conservation of rare medicinal plants. It also helps in various research projects by
providing raw material.
COMPUTER CENTRE
The University has excellent state-of-the-art computing facilities and system analysis
units in the computer centre to cater the needs of students. The computer centre is
well equipped with advanced computers along with all the necessary peripherals as
well as requisite softwares. Students also get unlimited and uninterrupted Internet
facility by University Wi-Fi facility.
Ragging in any form is strictly and legally prohibited in JAMIA HAMDARD. Anyone
found guilty will be dealt in accordance with the rules and regulations of JAMIA
HAMDARD. Punishment could include fine, suspension and/or expulsion from the
University. Any student (Fresher/ others) subjected to ragging shall report immediately
WOMEN CELL
The Women’s Cell of Jamia Hamdard was established in 2015 on the issue of sexual
harassment in the work place. Women’s Cell was formed to empower and uphold the
dignity of Women at work. The University aims to provide and maintain a dignified,
safe, congenial working and learning environment for women employees and students
free from gender discrimination and sexual harassment. It further cultivates the
atmosphere where men and women work together towards the growth and prosperity
of the institution in a safe and healthy academic environment.
The Women Cell is headed by a senior female faculty member and its main functions
are:
To look after all activities and issues related to women at Jamia Hamdard.
To organize activities/seminars/etc. for sensitizing faculty and students about
gender issues.
To look into all the grievances of women students/employees of Jamia Hamdard
Department of Biotechnology, SCLS, Jamia Hamdard 13
The main objective of the Equal Opportunity Cell of Jamia Hamdard is to help and
empower the persons with disabilities, students to participate fully in the academic,
intellectual, social and cultural life of University on an equal basis.
Functions:
a) To ensure equity and equal opportunity to the community at large in the college
and bring about social inclusion.
b) To enhance the diversity among the students, teaching and non-teaching staff
population and at the same time eliminate the perception of discrimination.
c) To create a socially congenial atmosphere for academic interaction and for the
growth of healthy interpersonal relationships among the students coming from
various social backgrounds.
d) To make efforts to sensitize the academic community regarding the problems
associated with social exclusion as well as aspirations of the marginalized
communities.
e) To help individuals or a group of students belonging to the disadvantaged
section of society to contain the problems related to discrimination.
f) To look into the grievances of the weaker section of society and suggest amicable
solution to their problems.
g) To establish coordination with the Government and other
agencies/organizations to mobilize academic and financial resources to provide
assistance to students of the disadvantaged groups.
h) To organize periodic meetings to monitor the progress of different schemes.
i) To adopt measures to ensure due share of utilization by SC/ST in admissions,
recruitments (teaching and non-teaching posts) and to improve their
performances.
j) To sensitize the college on the problems of SC/ST and other disadvantaged
groups.
UNIVERSITY WEBSITE
HEALTH CARE
Students of Jamia Hamdard are eligible for free consultation in allopathic and Unani
OPDs. Emergency services to students are also provided free of cost. Cost of medicine
has to be met by the students.
HOSTELS
A new state of the art Mess and a fully air-conditioned girls' hostel, with a capacity 400
beds, is underway and shall be ready in the third quarter of 2020.
Jamia Hamdard has Indoor and Outdoor sports facilities in the campus. For Indoor
facilities, a hall consisting of well-equipped physical fitness centre/gym, two
badminton courts, table tennis, carrom board and chess etc. are available with day
and night facility. For outdoor facilities, Jamia Hamdard has athletic track, well
maintained cricket ground, football ground and basketball & volleyball courts with
proper LED lights for day and night matches. Jamia Hamdard also organizes inter-
school sports tournaments (Hamdard Sports Meet) and Literary & Cultural Events
(Hamdard Fest) annually. Various inter and intra school tournaments are organized by
the university throughout the year. Various teams of Jamia Hamdard also participate
in sports & cultural activities in National, Regional and Zonal level events. Jamia
Hamdard has organized Zonal and National tournaments in past. The boys and girls
team of basketball and volley ball participated in inter zonal tournaments organized by
Association of Indian Universities. The cricket and football teams have also
participated in inter-university tournaments organized by Association of Indian
Universities.
National Service Scheme (NSS) is a program sponsored by the Ministry of Youth Affairs
and Sports, Government of India. The NSS volunteers participate in various awareness
program such as Pulse Polio Immunization camps, awareness about Hepatitis-B, DPT
and BCG immunization, HIV/AIDS, STD, importance of cleanliness, illiteracy
eradication program, plantation and related activities. NSS volunteers also participate
in program sponsored by Delhi AIDS Control Society. NSS volunteers organize blood
donation camp every year. A 15-day Special camp is organized by NSS volunteers
every year in slums of Delhi for community awareness. NSS Jamia Hamdard is a
member of the Red Ribbon Club which is HIV/AIDS awareness scheme sponsored by
Government of NCT, Delhi. The number of NSS volunteers in Jamia Hamdard is
around two hundred.
NCC is a highly reputed body and has an enormous history to take pride. In fact, NCC
is always ready for the nation by serving the best of the abilities and capabilities to the
people, for the people and by the people. As NCC is not just meant for military training
but it has also enabled the cadets to learn several other valuable things for life such as
selflessness, discipline, hard work, honesty and other leadership qualities. We have
54 cadets, in which most of the cadets have completed B or C certification and
attended various CATC, Trekking National Camp, Army Attachment and Others
Department of Biotechnology, SCLS, Jamia Hamdard 15
National Camps. NCC Jamia Hamdard also organized an Annual Conference on 30th
October 2019 on “Contribution of NCC Cadets for Nation Building and Global
Development”. Our cadets actively participate in Blood Donation camps, Jal Shakti
Abhiyan and Swachta Pakhwada Mission of Government of India.
The University has allocated some amount as Students Aid Fund which is meant for
financial help to the needy students. A student, whose parents/guardians have income
of less than Rs.10,000/- per month along with his/her performance at examinations
conducted by Jamia Hamdard is eligible for applying for the assistance from this fund.
PLACEMENT CELL
Department organizes NET coaching classes for the M.Sc. Biotechnology students
under the guidance of Head, Dept. of Biotechnology. The Coordinators are Dr. Alka
Narula, Dr. Humaira Farooqi, Dr. Jagriti Narang, Dr. Javaid Ahmad Shaikh and Dr.
Mairaj Ahmed Ansari. The NET coaching classes are held on Saturdays from 9.00 AM
to 1.00 PM. These classes are taken by the teachers from the Dept. of Biotechnology
and also from other departments of School of Chemical and Life Sciences as well as
outside experts. M.Sc. students are asked to submit those topics where they need
coaching and to be discussed during NET coaching classes.
a) Mrs. Shakila Naqvi Merit Scholarship for a (Muslim) female student of M.Sc. II
year who secures highest marks in M.Sc. I Year of Faculty of Science.
b) Tasmia Merit Scholarship for a student of M.Sc. II year Biotechnology on the
basis of merit of the candidate.
c) Noorul Hasan Memorial Scholarship for a student of II year of M.Sc.
Biotechnology on the basis of merit and need.
d) Prof. A.K.M. Ghouse Means-cum-Merit Scholarship for a student of M.Sc. II Year
Botany (Environmental Botany), on the basis of merit.
e) Anchrom Means-cum-Merit Scholarship for a student of M.Sc. II Year Chemistry
(Industrial Applications) on the basis of merit of the candidate.
f) Dr. Manoj Varshney Scholarship for a student of M.Sc. II Year Chemistry
(Industrial Applications) on the basis of merit.
g) Khalil Ahmad Merit-cum-means Scholarship for a student of M.Sc. Chemistry
on the basis of merit and need.
h) Late C.R. Arora Scholarship for a meritorious and needy student of M.Sc.
Chemistry (Industrial Chemistry) Final year.
i) Hind Agro Industries Merit Scholarship for a student of M.Sc. II year Toxicology
on the basis of merit-cum-financial need of the candidate.
j) Tasneema Fellowship for a female student of M.Sc. II Year (Toxicology) for
studies on Regulatory Toxicology
k) Late Hajji Mohammad Asif (s/o late Janab Mohammad Ishaque Sandook Wale,
1319, Pahari Imli, Delhi-6) Reward for knowledgeable student (MARKS)
Scholarship for bonafide Muslim student / students of MSc (either in
Biochemistry, Biotech, Chemistry-Industrial Applications, Environmental
Botany or Toxicology) for II year.
Department of Biotechnology, SCLS, Jamia Hamdard 17
ALUMNI ASSOCIATION
Department has established an Alumni Association. Passing-out and passed-out
batches have to submit the prescribed application form in the Office of the
Biotechnology for registration in the Association. A webpage has already been created
for Alumni Association. The coordinators of Alumni Association are Dr. Humaira
Farooqi and Dr. Saima Wajid.
SEMESTER – I
Course Code Course Name Paper Category Duration Credits Max Marks Sessional Exam Marks
MFC 001 Foundation Course Compulsory 120 hrs 8 200 50 150
Course
MBT OE101 Cellular Biology & Biomolecules Open Elective 72 hrs 4 100 25 75
MBT CC104 Practical – Biomolecules, Genetic Core 150 hrs 8 200 50 150
Engineering and Molecular Biology
SEMESTER – II
Course Code Course Name Paper Category Duration Credits Max Marks Sessional Exam Marks
MBT CC201 Expression of Genetic Information Core 72 hrs 4 100 25 75
MBT CC203 Plant Tissue Culture & its Core 72 hrs 4 100 25 75
Applications
MBT CC206 Practical – Molecular Plant Core 150 hrs 8 200 50 150
Physiology & Plant Tissue Culture
Discipline Centric
MBT DE207 Seminars/ Assignments 36 hrs 2 50 0 50
Elective
Discipline Centric
MBT DE307 Seminars/Assignments 100 hrs 2 50 0 50
Elective
SEMESTER – IV
Course Code Course Name Paper Category Duration Credits Max Marks Sessional Exam Marks
MBT CC401 Dissertation/ Viva voce Core 720 hrs 12 300 50 250
CHEMISTRY (Unit-I)
BIOCHEMISTRY (Unit-II)
BOTANY (Unit-III)
11 | P a g e
BIOTECHNOLOGY (Unit-IV)
TOXICOLOGY (Unit-V)
1. Introduction to Toxicology.
2. Various types of toxicity (Acute, subacute, subchronic and chronic).
3. Chemical interactions (Additive effect, potentiation, synergism and antagonism),
Dose response relationship (ED50, LD50 EC50, LC50.)
4. Routes of exposure, biotransformation of toxicants. In vitro and in vivo models
in toxicological studies.
5. Xenobiotics : Common toxicants of air, water & food and their adverse effect on
health.
12 | P a g e
Semester - I
13 | P a g e
CELLULAR BIOLOGY & BIOMOLECULES
MBT – OE101
Credit :4, Max. Marks: 100 [Sessional Marks: 25, Exam. Marks: 75] Time: 72 hours
UNIT – I
The cell & cell cycle: Structure and function of cell. Phases of the cell cycle; regulation of
the cell cycle by cell growth and extra cellular signals; cell cycle check points; coupling of S-
phase to M phase. Regulators of cell cycles progression – MPF; families of cyclins and cyclin –
dependent kinases; growth factors and D-type cyclins. Inhibitors of cell cycle progression.
Cell growth and division.
Cell Signaling: Signaling molecules and their receptors; functions of cell surface receptors;
pathways of intracellular signal transduction; signal transduction and the cytoskeleton;
signaling in development and differentiation. Bacterial Chemotaxis and Quorum Sensing;
Cell signaling and Cancer.
UNIT –II
UNIT – III
Amino acid and Protein metabolism : Acid base chemistry of amino acids Amino acid
synthesis and metabolism. Primary, secondary, tertiary and quarternary structure of
proteins. Super secondary structures. Isomerism and types. Dihedral angles, Ramachandran
plot. Hydropathy plot, Models of protein folding. Chaperone assisted protein folding; Amyloid
disease, Dnak and DnaJ mechanism of action; Circular dichroism. Sequencing, Peptide
synthesis, Interrelationship of protein and carbohydrate metabolism. Urea cycle.
Hyperammonemia. Regulation of cell metabolism.
UNIT – IV
Protein purification and enzymes : Cofactors and types; vitamin derived coenzymes (Role of
TPP, CoA, FMN, FAD, PLP, Biotin as cofactors in various enzymatic reactions); Fat and Water
soluble vitamins, and their deficiencies.
Purification of proteins: Salt fractionation, gel filtration (FC), PAGE-native and SDS, ion-
exchange chromatography, affinity chromatography, 2D gel electrophoresis, isoelectric
focusing.
Enzyme Kinetics: Characteristic of enzymes, Nomenclature and Classification,
Michaelis Menten Kinetics Inhibition of enzyme catalyzed reactions, Multifunctional
enzymes, multi-enzyme complexes, coupled reactions, cyclic reactions.
UNIT – II
UNIT – III
Mutation and mutagenesis : Physical and chemical mutagens and their effect on DNA.
Beneficial mutations; Site directed mutagenesis, oligonucleotide directed point
mutations; DNA damage and repair in prokaryotes and eukaryotes. Base and nucleotide
excision mechanisms. Direct repair. Mismatch repair, role of methylation, UV induced
damage and repair system. Error prone repair. SOS response.
Genome Editing : Concept, applications in plants and animals, prospects and
limitations.
UNIT – IV
Molecular Evolution: Separation, natural selection and evolution of proteins as well as,
nucleotide sequences. Molecular clock, evolution by gene duplication and exon shuffling,
deleterious genes. Eugenics, Gene frequencies, conservation of gene frequencies.
Transposable elements in bacteria. Mobile elements in eukaryotes. Insertional sequences
(IS elements), transposons and composite transposons, retroposons. Replicative and non
replicative transpositions. Molecular mechanism of transposition events.
UNIT – II
UNIT – III
UNIT – IV
16 | P a g e
PRACTICAL – BIOMOLECULES, GENETIC ENGINEERING AND
MOLECULAR BIOLOGY
MBT-CC104
Credit: 8 Max. Marks: 200 [Sessional Marks: 50, Exam. Marks: 150] Time: 200 hours
1. Instrumentation
2. Preparation of solutions and buffers.
3. Water analysis - Hardness, Conductivity and pH.
4. Qualitative and Quantitative analysis of Carbohydrates and
detection of reducing sugars by Folin-Wu-method.
5. Isolation and hydrolysis of starch & casein from biological samples.
6. Quantitative tests of Lipids & their separation by thin layer
chromatography (TLC).
7. Qualitative analysis of proteins and amino acids.
8. Separation and identification of amino acids by ascending paper
chromatography.
9. Extraction of proteins from biological samples and quantification by
Lowry’s and Bradford’s method.
10. Separation of proteins by SDS-PAGE.
11. Subcellular fractionation by differential centrifugation.
12. Sonication of subcellular fractions and quantification of proteins by
micro-Bradford’s assay.
13. Column chromatography (Molecular sieving)
14. Preparation of Luria Bertani (LB) medium for bacterial culture and
solutions.
15. Inoculation of E.coli DH5α strain on LB medium.
16. Extraction, quantification and agarose gel electrophoresis of
genomic DNA from E.coli DH5.
17. Effect of temperature and alkali on UV absorption of DNA:
Hyperchromicity.
18. Preparation of competent cells by CaCl2 method.
19. Ligation of linearized pGEM-T vector with an insert.
20. Transformation of chemically competent E. coli DH5α with plasmid
blue script using CaCl2 and heat shock method.
21. Isolation of plasmid DNA from E.coli by alkaline lysis method.
22. Agarose gel electrophoresis for plasmid DNA.
23. Restriction of λ-DNA, plasmid DNA and bacterial genomic DNA.
24. Agarose gel electrophoresis of restricted samples
25. Southern blotting of gel of restricted samples.
26. Isolation of RNA and its quantitation by UV spectrophotometer.
17 | P a g e
Semester - II
18 | P a g e
EXPRESSION OF GENETIC INFORMATION
MBT – CC201
Credit :4, Max. Marks: 100 [Sessional Marks: 25, Exam. Marks: 75] Time : 72 hours
Translation: mRNA, genetic code and its salient features. The structure of
tRNA. Genesis of –CCA. Adapter role of tRNA. Wobble hypothesis. Ribosome
as the site of protein synthesis. Structure and assembly. Polysomes.
Activation of aminoacids: aminoacylation of tRNA. Initiation, elongation and
termination of protein synthesis in prokaryotes and eukaryotes. Role of
Initiation and Elongation factors. Peptidyl transferese activity and peptide
bond formation. Translocation of ribosomes. Fidelity of protein synthesis:
GTPase timer. Bioenergetics of protein synthesis.
UNIT – II
UNIT – III
UNIT – IV
UNIT – II
UNIT – III
UNIT – IV
20 | P a g e
PLANT TISSUE CULTURE
PLANT AND ITS APPLICATIONS
BIOTECHNOLOGY I
MBT––CC203
MBT 302
Credit
Credit :4, Max.
:3, Max. Marks:
Marks: 100100 [SessionalMarks:25,
[Sessional Marks:25, Exam.
Exam.Marks:
Marks:75]
75]Time : 72: hours
Time 50 hours
UNIT – II
UNIT – III
UNIT – IV
21 | P a g e
BIOTECHNOLOGY: ENVIRONMENTAL & ETHICAL ASPECTS
MBT––CC204
MBT 401
Credit
Credit :4, Max.
:3, Max. Marks:
Marks: 100100 [SessionalMarks:25,
[Sessional Marks:25, Exam.
Exam.Marks:
Marks:75]
75]Time : 72: hours
Time 50 hours
UNIT – I
Ethical, Social and Biosafety aspects: Socio-economic and ethical aspects of biotechnology.
Environmental laws; Intellectual property rights; Objective of patent system, patentable
subjects and protection in biotech; Basic Principles of patent system, UPOV for plant
protection. GLP andGMP.
UNIT – II
UNIT – III
Research Ethics:
Concept of Plagiarism.
Reviewing literature.
Identification of research problem and proposal writing..
UNIT – IV
Bioremediation: Conventional and advanced technologies for the treatment of sewage and
industrial effluents, bioremediation of xenobiotics: characteristics and classification of
recalcitrant xenobiotics, metabolic pathways involved in their biodegradation, factors
affecting biodegradation of xenobiotics. Phytoremediation and wasteland reclamation.
Arithmetic Mean, Median and Mode (Theory and simple numerical problem)
Measures of variation : Standard Deviation, variance, coefficient of variation,
properties (Theory and simple numerical problems)
Correlation : Types of correlation, methods of correlation, simple, multiple
and linear and non linear correlation, spearman’s correlation coefficient,
Rank correlation (Theory and simple numerical examples)
UNIT – II
UNIT – III
UNIT – IV
23 | P a g e
PRACTICAL – MOLECULAR PLANT PHYSIOLOGY AND PLANT
TISSUE CULTURE
MBT – CC206
Credit: 8, Max. Marks: 200 [Sessional Marks: 50, Exam. Marks: 150] Time : 200 hours
24 | P a g e
Seminars / Assignments
MBT – DCE207
Credit:02, Max. Marks: 50 Time : 36 hours
25 | P a g e
Semester - III
26 | P a g e
ANIMAL BIOTECHNOLOGY
ANIMAL BIOTECHNOLOGY
MBT– –CC301
MBT 301
Credit :3, :4,
Credit Max. Marks:
Max. 100
Marks: 100[Sessional
[SessionalMarks:25, Exam.Marks:
Marks:25, Exam. Marks:75]75] Time
Time : 72 :hours
50 hours
Insect cell and mammalian cell culture :Primary and secondary cultures,
cell lines. Upscaling of anchor dependent and suspension cell cultures.
Expression of cloned genes in heterologous systems. General considerations.
Expression vectors. Promoters and other elements. Selection markers.
Production of bio-molecules by rDNA technology, expression of independent
and fused proteins, simple and glycosylated proteins. Choice of expression
system. Expression strategies. Construction of expression cassettes. Factors
effecting high level expression.
UNIT – II
UNIT – III
Insect cells and Baculovirus Expression Vector system : Early and late
promoters. Advantages of polyhedron promoter. Indirect cloning in
baculovirus. Silkworm larva as biofactory for the production of r-proteins.
Mammalian cell expression system : Strong promoters. SV40 and Cos cells.
Shuttle vectors. Helper virus and binary vector system. BPV, EBV and BKV
promoters for development of expression vector. Vaccinia virus: Potential
applications and pros and cons of its use. Adeno and retrovirus based
expression vectors.
UNIT – IV
Proteomics and r-Proteins: In vitro cell free protein synthesis: wheat germ S-
30, Rabbit reticulocytes; In vivo protein synthesis: frog oocyte system; Protein
engineering; Interactome: Protein-protein interactions. Proteome analysis.
Isolation and purification of r-proteins. Bioactivity of r-proteins. Strategies for
commercial production. Gene dose and expression levels.
Commercially available recombinant proteins. Production of GH, insulin;
TPA, gonadotropins, HBsAg and other biomedical products by r-DNA
technology.
Subject coordinator shall be responsible for completion of course and
submitting attendance as well as Sessional marks to Office of HoD. In case
of any difficulties, students will contact the course coordinator.
27 | P a g e
PLANT BIOTECHNOLOGY
MBT – CC302
Credit :4, Max. Marks: 100 [Sessional Marks:25, Exam. Marks: 75] Time : 72 hours
UNIT – II
UNIT – III
UNIT – IV
28 | P a g e
IMMUNOLOGY
MBT – CC303
Credit: 4, Max. Marks: 100 [Sessional Marks:25, Exam. Marks: 75] Time : 72 hours
UNIT – II
UNIT – III
UNIT – IV
Immune system in health and disease: Immunological tolerance.
Autoimmunity and associated disorders. Allergy and hypersensitivity.
Transplantation immunology - Graft rejection, graft versus host reaction.
Tumor immunology, cancer immunotherapy. Immune response to infectious
diseases – viral, bacterial, protozoal. Immunosuppression - immunodeficiency
diseases (eg.AIDS).
Subject coordinator shall be responsible for completion of course and
submitting attendance as well as Sessional marks to Office of HoD. In case
of any difficulties, students will contact the course coordinator.
29 | P a g e
BIOTECHNOLOGY AND HUMAN HEALTH
MBT – CC304
Credit :4, Max. Marks: 100 [Sessional Marks:25, Exam. Marks: 75] Time : 72 hours
UNIT – I
Hybridoma Technology: Production of murine monoclonal antibodies (MoAbs)-Fusion
strategies, HAT Selection; Strategies for production of human MoAbs-Humanization and
antigenization of MoAbs-Chimeric, CDR-grafted, SDR-grafted, veneered MoAbs.
Antibody Engineering: Antibody fragments, Antibody gene cloning; Expression of
recombinant antibody genes; Next generation display technologies for production of
antibodies in vitro; Combinatorial libraries and phage display libraries; Bispecific and bi-
functional antibodies; Immunoconjugates; Catalytic antibodies.
Clinical applications of MoAbs and engineered antibodies: In diagnostics, therapeutics
and other uses.
UNIT – II
Microbial Biotechnology and its applications: Components of culture media, synthetic
defined media, complex media, supportive media, enriched media, selective media,
differential media; Pure culture isolation by streaking, serial dilution and plating methods;
Cultivation, maintenance and stocking of pure cultures, cultivation of anaerobic bacteria;
Control of microorganisms- physical and chemical agents; Antibiotics and antiviral agents;
Use of prokaryotic and eukaryotic microorganisms in biotechnological applications;
Genetically engineered microbes for industrial application-Bacteria and yeast; Recombinant
microbial production processes in pharmaceutical industries-Streptokinase, Hepatitis-B
recombinant vaccines.
UNIT – III
Fermentation and Food microbiology: Scope, classification based on nature of the
products and kinetics of cell growth; Substrates for fermentation; Isolation and preservation
of cultures; Design of fermenters, various types of fermenters; Common problems and trouble
shooting; Downstream processing; Purification of products; Probiotics and fermented foods;
Applications
Cell and enzyme immobilization: Methods of immobilization, kinetics and uses of
immobilized enzymes; Bioreactors using immobilized enzymes; Applications of immobilized
enzymes in medical science and Industry; Biocatalyst technology, biosensors and analytical
applications.
UNIT – IV
Diagnostics: Nucleic acid and protein based diagnostic.
Strategies of Vaccine development: Traditional and new generation vaccines; Live
vaccines-(Polio, Rotavirus); Recombinant vaccines (Hepatitis B); Sub unit, VLPS and DNA
vaccines; Reverse vaccinology; Newer concept: Rational design based on Structural
biology & System vaccinology approach
Preclinical and clinical evaluation of vaccines
Gene therapy: Concept, principle, strategies and applications.
Stem Cells, Tissue Engineering and Regenerative medicine : Types of stem cells, Isolation
of stem cells and cryopreservation; Therapeutic cloning, Nuclear reprogramming; Induced
pluripotent stem cells; Ethical issues in stem cell research; clinical
applications(cardiovascular disease, cancer, spinal injury); Cord blood banking; Tissue
engineering: Technology in general and applications; Regenerative medicine .
UNIT – II
Bioinformatics resources on the internet.
Computational methods for sequence analysis: Pairwise and multiple sequence alignment
for DNA and protein sequences. Local and global sequence similarity.
Methods of sequence alignment: Dot matrix method, Dynamic programming method and
Heuristic method.
Scoring matrices: PAM, BLOSUM, Gonnet, Lookup tables.
Tools for similarity search and sequence alignment: BLAST and types, FASTA.
UNIT – III
Genome analysis and Gene identification: Sequencing, Assembly, Annotation,
Sequencing pipelines and databases.
Genome comparison and analysis.
Molecular Phylogeny: Methods of Phylogeny, Software for Phylogenetic Analyses,
Consistency of Molecular Phylogenetic Prediction.
Comparative genomics: Homologs, Paralogs and orthologs; Synteny; Comparative genomics
of Arabidopsis and Brassica rapa / Chimpanzees and human.
Structural analysis of Nucleic acids: Tools for prediction and designing.
UNIT – IV
Application tools: Primer designing.
Molecular imaging and design: CADD, QSAR.
Tools for molecular mapping: QTL, minisatellites, SNP's.
Mapping techniques: JoinMap, MapQTL, LOD Score method for estimating recombination
frequency.
Prediction of 3 dimensional structures of proteins: protein secondary and tertiary
structure prediction by using techniques: Chou-Fasman/GOR method, comparative
modeling, Threading and ab initio structure prediction.
Systems Biology – Concept and applications
31 | P a g e
PRACTICAL: IMMUNOOGY, ANIMAL AND PLANT
BIOTECHNOLOGY
MBT – CC306
Credit :10, Max. Marks: 250 [Sessional Marks: 50, Exam. Marks: 200] Time : 250 hours
32 | P a g e
Seminars / Assignments
MBT – DCE307
Credit:02, Max. Marks: 50 Time : 36 hours
33 | P a g e
Semester - IV
34 | P a g e
DISSERTATION
MBT – CC401
Credit :12, Max. Marks: 300 [Sessional Marks:50, Exam. Marks: 250] Time : 720 hours
35 | P a g e