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Article history: A newly isolated Serratia sp. W3 strain was shown to secrete a non-induced lipase in the culture medium. Lipo-
Received 7 September 2018 lytic activity was optimized using the response surface methodology (RSM) and the extracellular lipase from
Received in revised form 9 November 2018 Serratia sp. W3 (SmL) was purified to homogeneity with a total yield of 10% and its molecular mass was estimated
Accepted 9 November 2018
of about 67 kDa by SDS-PAGE. The amino acid sequence of the first 7 N-terminal residues of SmL revealed a high
Available online 12 November 2018
degree of homology with other Serratia lipase sequences. The purified SmL can be considered as thermoactive li-
Keywords:
pase, its maximal specific activity measured at pH 9 and 55 °C was shown to be 625 U/mg and 300 U/mg using
Serratia tributyrin and olive oil emulsion as substrate, respectively. In contrast to other described Serratia lipases, SmL
Lipase was found to be stable at a large scale of pH between pH 5 and pH 12. SmL was also able to hydrolyze its substrate
Optimization, response surface methodology, in presence of various oxidizing agents as well as in presence of surfactants and some commercial detergents.
purification Then, considering the overall biochemical properties of SmL, it can be considered as a potential candidate for in-
Characterization dustrial and biotechnological applications, such as synthesis of biodiesel and in the detergent industry.
Thermo-alkaline © 2018 Elsevier B.V. All rights reserved.
https://doi.org/10.1016/j.ijbiomac.2018.11.050
0141-8130/© 2018 Elsevier B.V. All rights reserved.
A. Eddehech et al. / International Journal of Biological Macromolecules 123 (2019) 792–800 793
conditions. Further advantages include increased solubility of lipid sub- sequences available in the nucleotide database using the BLAST nucleo-
strates in water, faster reaction and reduced possible risk of contamina- tide algorithm at the NCBI.
tion [16,17].Therefore, the overall purpose of this work is to identify a
new strain Serratia sp. W3 isolated from palm leaf and optimize the cul- 2.5. Lipase activity measurement
ture conditions for a maximum production of a thermo-active, alkaline
and detergent-stable lipase. Further, the obtained lipase purification Lipase activity was measured titrimetrically at pH 9 and 55 °C with a
and biochemical characterization was sought to respond to biotechno- pH-stat, under standard conditions described previously [19], using
logical application requirements. tributyrin or olive oil emulsions as substrates in the presence of 3 mM
CaCl2 and 1 mM NaDC. One unit of lipase activity corresponds to 1
2. Materials and methods μmol of fatty acid liberated per minute under standard conditions. Pro-
tein concentration was determined as described by Bradford [20] using
2.1. Bacterial strains, plasmids, and media bovine serum albumin (BSA) as the reference protein.
Tributyrin (99%, puriss.) and benzamidine were obtained from Fluka 2.6. Optimization of enzyme production
(Buchs, Switzerland). Sodium deoxycholic acid (NaDC), sodium
taurodeoxycholic acid (NaTDC), casein peptone, yeast extract and 2.6.1. Preliminary studies
ethylene diamine tetraacetic acid (EDTA) were purchased from Sigma Preliminary studies have been carried out in order to select the best
Chemical (St. Louis, USA); Arabic gum was from Mayaud Baker LTD nitrogen and carbon sources based on the classical method ‘one variable
(Dagenham, United Kingdom); protein molecular mass marker and at a time’. Different conditions were tested with several sources of car-
supports of chromatography used for lipase purification: Sephacryl bon (casein, glucose, maltose, esters (Tween 80 and Tween 20), triglyc-
S-100, monoQ-Sepharose and DEAE-cellulose gels were from Amersham; erides (olive oil and soya oil)) and different organic and inorganic
acrylamide and electrophoresis grade were from BDH (Poole, United nitrogen sources (urea, yeast extract, soy flour, NH4Cl).
Kingdom); pH-stat was from Metrohm (Switzerland). One factor approach experiment was adopted to study the effect of
incubation temperature, incubation time and agitation speed on en-
zyme production (Fig. S1). Obtained results revealed that the lipolytic
2.2. Source of strains
activity reached its maximum at 30 °C and 200 rpm. The follow-up of li-
polytic activity's kinetics showed that the beginning of the growth
In order to study some of their enzymatic potentials, a set of bacterial
phase was at 32 h. The production of the lipase was triggered from the
strains, isolated from several different Tunisian biotopes of which we
beginning of the growth phase and reached its maximum activity at
quote date palm leaf, located in the Nefta oasis north of “Chott Djerid”,
the end of the exponential phase corresponding to 32 h of culture.
and industrial effluents from the Sfax region were the subject of a qual-
The experiments were made in 250 mL Erlenmeyer flasks with a
itative test followed by a quantitative one in order to screen their lipo-
useful volume of 50 mL on a nutrient broth (medium A) from a 16-h
lytic activities for potentiality to degrade olive oil.
old pre-culture (Optical Density (OD) at 600 nm = 0.08), the pH was
set at 7. The culture was incubated aerobically during 32 h on a rotary
2.3. Isolation and screening of lipolytic bacterium shaker set at 200 rpm and at a temperature of 30 °C.
We adopted a planning experimental methodology to enhance the
Initial screening of lipolytic microorganisms from various Tunisian production of SmL by Serratia sp.W3. These include a first screening
biotopes was carried out using a plate assay in a medium containing tri- by Plackett-Burman design and an optimization by a Box Benkhen
acylglycerol and the fluorescent dye Rhodamine B [18]. The solid me- Design.
dium contains 1‰ olive oil, 1% nutrient broth, 1% NaCl, 1.5 g agar and
1‰ Rhodamine B. The culture plates were incubated at 37 °C, and colo- 2.6.2. Plackett - Burman designs
nies giving orange fluorescence halos around them, upon UV irradiation, According to the preliminary study, it was assumed that the extra-
were regarded as putative lipase producers [18]. Among the variable cellular lipase production depended on seven parameters (yeast extract,
isolates, W3 showed the maximum zone formation of 10 mm on peptone, tryptone, NaCl, K2HPO4, glucose and pH). In order to deter-
tributyrin medium at 37 °C of incubation after 24 h. Qualitatively mine which of these potential parameters had a statistically significant
screened lipolytic bacteria W3 were subjected to quantitative screening effect on the enzyme synthesis, a Plackett-Burman (PB) design with
by assaying their enzyme activity under submerged fermentation with 15 experiments was carried out. The variables were analyzed at three
medium A containing: 17 g/L peptone, 5 g/L yeast extract, 2.5 g/L levels of their values: high (+1), baseline (0) and low (−1). The base-
K2HPO4, 5 g/L NaCl, pH 7, and finally selected for further studies. line level (0) corresponded to central values of the screening design.
The levels attributed to each variable were determined based on results
2.4. Identification of the isolated strain of preliminary study (data not shown).
The bacteria were identified by morphological and physiological 2.6.3. Box Benkhen
characterizations, including Gram reaction, motility, cell morphology The factors selected based on the screening design as having a signif-
growth under anaerobic conditions, catalase and oxidase production, icant effect on lipolytic activity were subjected to further optimization
as well as other tests included in the species description. The biochem- with RSM using a Box–Benkhen experimental design. The variables
ical tests were conducted using the API 20NE system. The identification were prescribed into three levels, coded −1, 0 and 1. Consequently, all
was further improved via the 16S rRNA gene sequencing method. the involved factors' level combinations were constructed.
Briefly, genomic DNA of W3 was extracted from bacterial colonies by
a set buffer method and amplified using (5′ CCGAATTCGTCGACAACAG 2.7. Production and purification of Serratia sp. W3 lipase
AGTTTGATCCTGGCTCAG 3′) and reverse (5′ CCCGGGATCCAAGCTTAAG
GAGGTGATCCAGCC 3′) universal primers. PCR amplification was pro- The culture medium from Serratia sp. W3 was prepared under opti-
grammed to carry out an initial denaturation step at 94 °C for 3 min, mal conditions for 32 h of incubation at 30 °C and 200 rpm. Cells were
30 cycles of denaturation at 94 °C for 1 min, annealing at 53 °C for discarded by centrifugation (25 min, 8470 g) and the resulting crude en-
1 min and elongation at 72 °C for 2 min, followed by a final amplification zyme solution (500 mL) was precipitated with solid ammonium sulfate
step at 72 °C for 3 min. The 16S rRNA gene sequence was compared with (65% saturation) at 4 °C.
794 A. Eddehech et al. / International Journal of Biological Macromolecules 123 (2019) 792–800
database as a new Serratia sp. W3 Tunisian cultivar under the following and its activity. In this study, we aimed to select the most influential fac-
accession number MH762127. tors using the PB approach among a large number of variables.
Reducing the number of parameters to be taken into account in
modeling makes it possible to minimize the coefficients to be identified
3.3. Optimization of enzyme production in the models and consequently the experiments to be carried out for
this operation. According to this assumption, six medium components
Bacterial ability to produce lipases is highly dependent on the strain (yeast extract, peptone, tryptone, NaCl, K2HPO4, glucose) and one oper-
and bacterial medium composition influencing the enzyme synthesis ational parameter (pH) were tested using a 15-run matrix. These
Fig. 1. Response surface plot of SmL production showing the mutual interaction between (A) yeast extract (X1) and peptone (X2) concentrations at constant value of tryptone (0.25%),
(B) tryptone (X3) and yeast extract (X1) concentrations with peptone fixed at 1%, (C) tryptone (X3) and peptone (X2) concentrations at constant yeast extract value (0.25%).
796 A. Eddehech et al. / International Journal of Biological Macromolecules 123 (2019) 792–800
parameters were studied at three levels of value (Table 1). The PB re- 3.3.2. Graphical interpretation of the mathematic model
sults indicated a variation of lipase activity in the range from 0 to The fitted model was used to draw curves that reflect the indepen-
6 U/mL in fifteen trials. This wide range proved the importance of this dent effect of peptone, yeast extract and tryptone concentration in cul-
step in selecting the most involved factors and fixing the level of less in- ture medium on lipolytic activity. The surface curves (Fig. 1) show that a
fluential ones. high lipolytic activity can be reached when using high concentrations of
The lipolytic activity data were statistically analyzed within a PB de- both peptone and tryptone.
sign using the Design Expert software to estimate t-value represented
by the Pareto-chart diagram, the sum of squares and percentage of con- 3.3.3. Optimum point
tribution of each factor in the response (data not shown). The factor The response optimizer in Design Expert software was used to find
contribution rates and the Pareto chart data which present, in rod the optimum value of the variables for maximum lipolytic activity by
form and in ascending order, the t-value of the effects of different pa- Serratia sp. W3. The optimum value of the variables in actual unit was
rameters studied showed that the most influential factors are peptone, predicted as 14.9 g/L casein peptone, 3.7 g/L tryptone, 2.2 g/L yeast ex-
yeast extract, tryptone and pH. tract, 3 g/L NaCl, 5 g/L glucose, the pH being set at 7 and the temperature
In fact, wheat peptone, yeast extract and tryptone concentration at 30 °C with the predicted maximum lipolytic activity of 12.93 U/mL.
had a positive effect on lipase production, while the pH exhibited a The organism produced 13 U/mL, thus confirming the validity. The li-
negative one. When the sign of the effect of the tested variable is pase production yield (13 U/mL) was absolutely more important than
positive, the response is greater at a high level of the parameter, the one obtained during the preliminary study (5 U/mL). Thus, lipase
and vice versa.
Thus, on a set of 7 parameters estimated as potentially influential, 4
factors had a significant involvement in the observed responses and the A 1.2 35
statistically insignificant variables, i.e. glucose, K2HPO4 and NaCl, were 1.0 30
discarded in the successive optimization stage.
Activity (U.mL-1)
25
0.8
20
3.3.1. Lipolytic activity optimization using response surface methodology 0.6
(RSM) 15
Peptone, yeast extract, tryptone and pH, the most influential factors 0.4
10
in lipolytic activity, were optimized using a Box Behnken design 0.2 5
(Table S1). For a plan with 4 factors, 27 experiments were necessary.
In order to reduce this number, the pH was discarded and the three 0.0 0
other factors were chosen as critical variables affecting lipase produc- 10 20 30 40 50 60 70 80
tion. For each experiment, the remaining factors were maintained at Fraction number
KH2PO4 0% (negative effect −0.5 and low contribution percentage
1.11), glucose 0.5%, NaCl 0.5% and pH 7. 0.25 25
The mathematical model in terms of coded factors is expressed as
B [NaCl] (M)
follows: 0.5
0.20 20
Absorbance (280 nm)
Activity (U.mL-1)
0.15 15
R1 ¼ þ12:00 þ 2:63 A þ 0:44 B þ 2:06 C−0:50 A B þ 1:75 A
C−1:63 B C−2:56 A2 –3:44 B2 –5:19 C2 0.10 10
0.05 5
where R1 is the estimated lipolytic activity and A, B and C the coded
values for peptone, yeast extract and tryptone, respectively. 0.15
0.00 0
Statistical significance of model equations was evaluated by ANOVA 0 10 20 30 40
based on Fisher's test. The analysis of the variance shows that the sum of Fraction number
the squared deviations (SS) evaluated with 14 degrees of freedom (dof)
is divided into two sums of squares. The first, estimated at 9 dof, is due 0.14 14
C [NaCl] (M)
to regression (to factors) which encompasses the effects of factors and 0.12 0.50 12
Absorbance (280 nm)
kDa 1 2 3 Table 4
N-terminal sequence comparison of SmL (present study) with SM6, ES-2 and ECU 1010
lipases.a,b
97 ES-2
a
--MGIFSYKDLDENASKALFSDALAI [24]
Amino acid sequences for comparison were obtained using the program BLAST-P
43 CaCl2, 1 mM NaDC at pH 9 and 55 °C. These data indicate that the en-
zyme has a preference for short-chain triacylglycerol substrates. No
phospholipase activity was detected when using egg PC as the substrate
in the same experimental conditions.
Table 3
Flowsheet of the purification procedure of SmL. See Materials and methods for details. One unit (U) corresponds to micromole of fatty acid released per minute using tributyrin as substrate
under the experimental conditions used. Activity measurements are described in Materials and methods.
Purification step Total protein (mg) Total activity (U) Specific activity (U/mg) Yield (%) Purification (fold)
3.6.2. Effect of temperature on SmL activity and stability showed that the lipase was active at temperatures ranging from 30 °C to
The effect of temperature on SmL stability was determined by mea- 60 °C and activity increased significantly with temperature to reach its
suring the residual SmL activity after incubation of the pure enzyme at maximum value at 55 °C. This high activity at 55 °C may be explained
various temperatures (Fig. 4 C). The thermal stability profile of the puri- by the presence of calcium ions in the assay medium which could stabi-
fied enzyme showed that the lipase was inactivated at high tempera- lize the conformation of the enzyme.
tures (above 55 °C). These results show that SmL is a thermo-active enzyme, unlike all
The enzyme retained more than 50% or 30% of its initial activity after the Serratia lipases previously described by Bachkatova and Severina
30 min of incubation at 50 °C and 60 °C, respectively. These results are in (1980) [30], which showed that the highest lipase activity was from S.
accordance with earlier works [27] that found that lipase activity from marcescens strain 345 at 45 °C. In addition, Abdon (2003) [27] reported
S. marcescens is not as thermostable as other bacterial lipases. However, an optimal temperature of lipase activity of one S. marcescens strain at
according to previous studies, calcium ions could enhance the thermo- 37 °C, and Immanuel et al. (2008) [31] revealed an optimal temperature
stability of the family I.3 lipase [12]. This was confirmed with our extra- of lipase activity of S. rubidaea between 25 and 35 °C. In fact,
cellular lipase (this study). In fact, the effect of Ca2+ supplementation at extremozymes can be used in industrial reactions that are not feasible
a final concentration of 3 mM was clearly noticed almost in the whole at ambient temperature. High temperature is preferable in many chem-
range of temperatures compared to that without the addition of the ical reactions to guarantee higher solubility of substrates, better mixing,
ions. The SmL is able to retain more than 70% of its initial activity in faster reaction rate, lower viscosity, and decreased risk of microbial con-
the presence of calcium ions even at 60 °C. Hence, calcium ions appar- tamination [32].
ently play a key role in maintaining the three-dimensional conforma-
tion of SmL at extreme temperatures. 3.6.3. Effect of metal ions on SmL activity
The effect of temperatures in SmL activity was also studied by Different ions (Ca2+, Cu2+, Mg2+ and Fe2+) were studied for their
assaying the enzyme activity at different temperatures (Fig. 4D). Results influence on the purified Serratia sp. W3 lipase activity. As shown in
120.0 700
100.0
A 600 B
Specific activity (U/mg)
Residual activity (%)
500
80.0
400
60.0
300
40.0
200
20.0 100
0.0 0
2 4 6 8 10 12 2 4 6 8 10 12
pH
pH
700 120
600 C 100
D
Specific activity (U/mg)
500 80
400
60
300
40
200
Sml (0 mM Ca2+)
20
100 Sml (3 mM Ca2+)
0 0
30 40 50 60 70 30 40 50 60 70
Temperature (°C) Temperature (°C)
700 700
Ca2+
600 Mg2+ E F
Specific activity (U/mg)
600
Specific activity (U/mg)
Cu2+
500 Fe2+ 500
400 400
300 300
200 200
100 100
0 0
0 2 4 6 8 10 12 0 2 4 6 8 10
[NaDC] mM
Ions concentrations (mM)
Fig. 4. pH effect on the SmL activity (A) and stability (B): The enzyme activity was determined by measuring the activity at various pH and after incubation the pure SmL for 1 h in different
buffer solutions at various pH ranging from 3 to 12. The activity of the enzyme at pH 5.4 was taken as 100%. (C) Temperature effect on enzyme activity and stability (D): SmL activity was
tested at various temperatures and after 30 min of incubation in the presence and absence of CaCl2 at different temperatures. The activity of the non-heated enzyme was taken as 100%. In
all experiments, lipase activity was measured under standard conditions using TC4 as substrate. (E) Effect of the concentration of metal ions on SmL activity. Lipase activity was measured
at increasing concentrations of metal ions using tributyrin as substrate in the presence of 1 mM NaDC. The star indicates the enzymatic activity measured in the absence of any metal ions
traces and in the presence of 10 mM EDTA. (F) Effect of increasing concentration of bile salts (NaDC) on lipase activity in presence of 3 mM CaCl2 using the tributyrin as substrate as
substrate. Each point represents the mean of three independent experiments.
A. Eddehech et al. / International Journal of Biological Macromolecules 123 (2019) 792–800 799
Fig. 4E, calcium ions play the role of a cofactor for the SmL. The presence Table 5
of this ion in the assay medium was shown to be the most effective in Stability of Serratia Sp. W3 lipase in the presence of various organic solvents. The enzyme
was incubated 24 h under shaking condition at 25 °C in the presence of one solvent (10%,
increasing lipase activity to reach a maximum of 625 U/mg using v/v) and (10%, v/v), and then the residual activity was determined at pH 9 and 55 °C using
tributyrin as substrate at 55 °C and at pH 9. Indeed, previous studies tributyrin as substrate. The control was measured after incubation of the esterase in ab-
have reported that the lipases from Serratia genus are defined as sence of organic solvent.
calcium-stimulated and are already known to contain a Ca2+ binding
Organic solvents Residual activity (%) Residual activity (%)
site near the active site that affects the stability and activity of the li- (10%, v/v) (50%, v/v)
pases. Furthermore, the addition of Ca2+ drastically enhances the lipase
Methanol 90 17
activities. [33,34]. DMSO 97 23
Magnesium ion is also demonstrated to be a for SmL catalysis Ethanol 87 18
which reaches a maximum level of hydrolysis (480 U/mg) in the Acetone 77 13
presence of 3 mM of Mg2+ in the assay medium. However, Cu2+ Isopropanol 83 26
80
Additionally, the novelty of Serratia sp. W3 strain, and the lipase ex-
plored here with its unique stability characteristics, makes this enzyme
60
a potential catalyst for other biotechnological applications such as
40 synthesis of biodiesel, biodegradable biopolymers for application in
the detergent industry.
20 Supplementary data to this article can be found online at https://doi.
org/10.1016/j.ijbiomac.2018.11.050.
0
Triton X100 SDS NaDC NaTDC Tween 80
Acknowledgments
Fig. 5. Lpase stability of SmL in presence of surfactants. SmL preparation was incubated in
presence of surfactants (20 mM), commercial detergents (1%, w/v) and oxidizing agents
This study was supported by “Ministry of Higher Education Scientific
(10%, v/v) for 1 h at 40 °C. Residual SmL activity was determined at pH 9 and 55 °C. All research Tunisia” through a grant to “Laboratory of Biochemistry and
experiments were done in triplicate. Enzymatic engineering of Lipases - ENIS”.
800 A. Eddehech et al. / International Journal of Biological Macromolecules 123 (2019) 792–800
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