Professional Documents
Culture Documents
Tissue Processing
• Teasing
o A process whereby a selected tissue specimen is
Introduction to Tissue Processing immersed in a watch glass containing isotonic salt
solution, carefully dissected or separated, and
• Overview examined under a microscope.
o Processing of Tissue – a better and more effective o Unstained by Phase Contrast or Bright Field
means of studying tissues whether normal or Microscopy, or stained with differential dyes.
abnormal is by examination of their sections and
smears which have been permanently preserved,
stained and mounted on glass slides with cover
slips for permanent keeping.
o Processing of tissues involves our tissues and also
the smears of the client/patient preserved
permanently for diagnosis for reading of the
pathologist and for the future used.
o Involves the sample being placed on the glass
slides permanently.
• Why examine histopathologic specimens? • Squash Preparation (crushing)
o Pathology attempts to explain the why’s and o A process whereby small pieces of tissue not more
wherefores of the signs and symptoms manifested than 1 mm in diameter are placed in a microscopic
by patients while providing a sound foundation for slide and forcibly compressed with another slide or
rational clinical care and therapy. with a cover glass.
o Examined the samples to arrive on a certain o A vital stain may be placed at the junction of the
diagnosis and therapy of the patients and also to slide and the cover glass, and allowed to be
suggest the therapy for the client. absorbed by the tissue through capillary attraction.
o With the used of histopathology specimens it can be • Smear Preparation
tested using immunohistochemical staining – this o The process of examining sections or sediments
are stains that used for the treatment of the client. whereby cellular materials are spread lightly over a
o Determine if the sample is benign or malignant. slide by means of a wire loop or applicator, or by
Methods of Tissue Examination making an apposition smear with another slide.
o Especially useful in cytologic examinations,
Fresh Tissue particularly for cancer diagnosis.
▪ Streaking
• Usually examined when there is an immediate need for With an applicator stick or platinum loop,
evaluation. the material is rapidly and gently applied
• We use fresh tissue to diagnose the patient immediately. in a direct or zigzag line throughout the
• We use fresh tissue with a preservatives for the slide.
specimen. Attempts to obtain a relatively uniform
• Advantages: distribution of secretion.
o Examined in the living state thereby allowing Too thin or too thick smears have to be
protoplasmic activities such as: motion, mitosis, avoided, since they make the tissue
phagocytosis and pinocytosis to be observed. unsuitable for examination.
• Disadvantages: Commonly encountered when you have
o Its use has been limited Gynecological specimens for
o Liable to develop the changes that have usually Papanicolaou stain.
been observed after death. ▪ Spreading
A selected portion of the material is
transferred to a clean slide and gently
spread into a moderately thick film by surgeon and the client can decide to perform
teasing the mucous strands apart with an modified radical mastectomy to remove the
applicator stick. entire breast.
A little more tedious than streaking but ▪ Routine biopsy can take up to 3-5 days or
maintains cellular interrelationships of the sometimes 1 month before the pathologist can
material to be examined. release a result.
For fresh sputum and bronchial aspirates, ▪ Frozen section is for rapid diagnosis we cut
and also for thick mucoid secretions. slices of the tissue around 10-15 micrometers
Spread evenly the sputum and the instrument that we used is the cryostat
AFB smear - blue at -10°C to -20°C depending on the sample
Mycobacterial tuberculosis - pink/red sometimes it can go up to -25°C.
▪ Pull-apart ▪ Freezing medium example, liquid nitrogen,
Done by placing a drop of secretion or isopentane cooled by the liquid nitrogen,
sediment upon one side and facing it to carbon dioxide gas and aerosol spray.
another clean slide. o Frozen sections are commonly used for:
Material disperse evenly over the surface ▪ Rapid pathologic diagnosis during surgery
of the two slides. ▪ Diagnostic and research enzyme
Slight movement of the 2 slides in histochemistry
opposite directions may be necessary to ▪ Diagnostic and research demonstration of
initiate the flow of materials. soluble such as lipids and carbohydrates
2 slides are then pulled apart in a single ▪ Immunofluorescent and immunohistochemical
uninterrupted motion. staining (IHC)
Most commonly used method in ▪ Some specialized silver stains, particularly in
preparation of fluid slide/cell slide for neuropathology.
cytology specimen. o Commonly used methods of freezing:
When you received sample (fluid cytology) ▪ Liquid nitrogen
always remember to prepare glass/cell ▪ Isopentane cooled by liquid nitrogen
slide for cytology and cell block. ▪ Carbon dioxide gas
Pull the 2 slides on different direction ▪ Aerosol sprays – sometimes it has liquid
Ex: Peritoneal fluid nitrogen at a matter of 2-5 secs the sample it
▪ Touch Preparation (Impression smear) will turn to rough as a stone.
One of the routine procedures done in the
laboratory. Preserved Tissue
A special method of smear prep whereby • Solid structures and tissues must be preserved and
the surface of a freshly cut piece of tissue carefully processed in the following order:
is brought into contact and pressed on to o Fixation
the surface of a clean glass slide, allowing o Decalcification (optional) – this is optional if the
the cells to be transferred directly to the sample has calcification or it has a rough portion
slide for examination by Phase Contrast o Dehydration – remove the excess water that you
microscopy or stained for light obtain during the fixation
microscopic study. o Clearing – to remove the excess dehydrating agent
Ex: Breast mass o Infiltration (impregnation)
Cells may be examines without destroying o Embedding
their actual intercellular relationship. o Trimming
• Frozen Section o Section-cutting
o Normally utilized when a rapid diagnosis of the o Staining
tissue in question is required, and is especially o Mounting
recommended when lipids and nervous tissue o Labeling
elements are to be demonstrated. o Fixation and infiltration can sometimes take up to
▪ Very thin slices, around 10-15 in thickness 12 hours
are cut from a fresh tissue frozen on a Cryostat o Frozen section at a matter of 30 minutes you have
(instrument or machine to be used) , a cold a result.
chamber kept at an atmospheric temperature of • Receiving, custody and identification of tissues
-10 °C to -20°C. o Receipt of Specimens
▪ Cryostat is a microtome inside the freezer. ▪ Specimen can be received fresh (without
▪ Within 15-30 minutes released a result if a fixative) or in formalin.
sample is benign or malignant so that if the ▪ Never put fixative/formalin for frozen
sample is benign the doctor/surgeon or even specimen or frozen section specimens.
the client can decide not to remove the entire I. Fresh
breast if he/she wants to preserve the breast.
But if the sample turn out to be malignant the
For frozen sections, tissue is received o The specimen is then cut into representative
fresh for immediate microscopic sections and is put in small plastic cassette to hold
evaluation by the Pathologist. the tissue
May be received for an OR consultation. ▪ 3.0 x 2.0 x 0.4 cm – std of cassette
The pathologist will look at the specimen ▪ Specimen should not be more than 0.3 mm in
and make a gross diagnosis. thickness.
❖ You may weigh and measure the
specimen Responsibility of a Technician
❖ You may also ink the specimen, if 1. Specimen preservation.
necessary; however, always check 2. Specimen labeling, logging and identification.
with the Pathologist before making 3. Preparation of the specimen to facilitate their gross and
any of these decisions. microscopy.
II. In formalin 4. Record keeping.
Proceed as a routine surgical specimen
Ideally, the specimen should have at least Specimen – Types
20x its volume of formalin.
Volume of tissue to fixative of choice: 1:20 • Excision specimens (surgical biopsies), where whole
organs or affected areas are removed at operation. (we
Specimen Accessioning used blade)
• Incisional biopsy specimens, where tissue is removed
• Each specimen receives an accession number. for diagnosis from within an affected area.
• Each number is unique to that particular case and is • Punch biopsies, to remove a small piece of suspicious
never reused. tissue for examination (often from the skin) – (we used
• The specimen container(s), the requisition slip and all circular blade; usually we used dermatological
cassettes are labeled with the case/accession number. specimen; it produce cylindrical shape sample)
Grossing and Section Cutting • Shave biopsies, where small fragments of tissue are
“shaved” from a surface (usually skin) (we used curve
• Grossing, often referred to as “cut-up”, it involves a razor to remove the sample on the skin)
careful examination and description of the specimen its • Curettings, where tissue is removed in small pieces
- appearance, - number of pieces and dimensions. from the lining of the uterus or cervix. (we used
• Gross Examination of Specimens - the most important curettage)
processes in which the pathologist arrives at a • Core biopsies, where a small tissue sample is removed
diagnosis. using a special needle sometimes through the skin
• Steps: (percutaneously)
o Identification of the specimen
▪ Patient’s surname, name birthday, hospital
number
▪ The specimen container must bear the same
name and accession number in the request
form
• Criteria for rejection of gross specimen
o Discrepancies between the requisition and
specimen label
o Specimen with no labels, or mislabeled
o Leaking specimen container
o Absent clinical data or history
o Inappropriately identified specimen
Grossing
Describing Specimens
• Orientation Markers
o Inks, nicking and suturing (Request form)
o Inks – to identify and orient the specimen
component
o Nicking – for indicating laterally
o Sutures attaches – represented as
▪ LL – long lateral
▪ SS – short superior
o We used ink for the margin or resection
shrinkage of tissues
Preserves fats, glycogen and A soft fixative and does not
Types of Fixatives: According to Action mucin harden some cytoplasmic
structures adequately
A. Microanatomical Fixatives
enough for paraffin
• Permit general microscopic study of tissue structures embedding.
1. 10% Formol Saline Allows tissue enzymes to be
2. 10% Neutral Buffered Formalin studies because it does not
3. Heidenhein’s susa – preservation of the tumor precipitate proteins
specifically skin Recommended for nervous
4. Formol sublimate (formol corrosive) tissue preservation
5. Zenker’s solution Allows natural tissue colors
6. Zenker’s formol (Helly’s solution) to be restored: recommended
7. Bouin’s solution – preservation of embryo for colored tissues
8. Brasil solution photography
B. Cytological Fixatives Tolerant fixative used for
• Preserve specific parts mailing specimen
o Nuclear Fixative
- Preserve nuclear structure (chromosomes). 10% Formol Saline
Contain glacial acetic acid, due to its affinity
to nuclear chromatin. • Microanatomical fixative
- pH 4.6 or less • Recommended for fixation of central nervous tissues
- Examples: and general postmortem tissues for histochemical
1. Flemming’s Fluid examination
2. Carnoy’s Fluid – fastest type of fixatives • Fixation time: 24 hours at 35°C / 95°F
3. Bouin’s Fluid • 48 hours at 20-25°C / 65-77°F
4. Newcorner’s Fluid • Preserves enzymes and nucleoproteins
5. Heidenhain susa • Large specimens may be fixed for a long time
o Cytoplasmic • Slow fixative
- Cytoplasmic structure, no glacial acetic acid,
(destroy mitochondria and Golgi bodies of the 10% Neutral buffered formalin or Phosphate-buffered
cytoplasm) formalin (pH 7)
- pH >4.6
• Recommended for preservation and storage of surgical,
- Examples:
post-mortem and research specimen
1. Flemming’s Fluid without acetic acid
2. Helly’s Fluid • Fixation time: 4-24 hours
3. Formalin with “post-chroming” • Prevents precipitation of acid formalin pigments on
4. Regaud’s Fluid (Muller’s fluid) post-mortem tissues
5. Orth’s Fluid – preservation of Rickettsiae • Best fixative for tissues containing iron pigments and
C. Histochemical Fixatives for elastic fibers
• Preserve the chemical constituents of cells and tissues • Longer to prepare; time consuming; reduce reactivity of
1. Formal Saline 10% myelin to Weigfert’s iron hematoxylin stain; inert
2. Absolute Ethyl Alcohol towards lipids
3. Acetone – diagnosis of rabies for brain specimen Formol – Corrosive or Formol – Sublimate
4. Newcomer’s Fluid
• Formol-mercuric chloride solution is recommended for
Aldehyde Fixatives
routine post-mortem tissues
Formaldehyde (Formalin) • Fixation time: 3-24 hours
• Penetrates small pieces of tissues rapidly
• 10% formalin – most widely used • Excellent for many staining procedures including silver
• A gas produced by the oxidation of methyl alcohol reticulum methods.
• Pure stock solution of 40% - unsatisfactory for routine • Slow penetration; form a mercuric chloride deposits;
fixation inhibits determination of the extent of tissue
• Usual fixation time – 24 hours decalcification
• Buffered to pH 7 with phosphate buffer
Alcoholic Formalin or Gendre’s Fixative
Advantages Disadvantages
Cheap, readily available, May cause sinusitis, allergic • Fixation is faster
easy to prepare, relatively rhinitis, excessive • For rapid diagnosis because it fixes and dehydrates at
stable lacrimation or allergic the same time
dermatitis
Compatible with most stains May produce considerable
• Good for preservation of glycogen and for micro- • Will form precipitate on standing but this is of no
incineration technique - (good for demonstration of consequence.
minerals)
Chromate Fixative
• Used to fix sputum since it coagulates mucus
• Produces gross hardening of tissues Chromic Acid
• Causes partial lysis of RBCs
• Preservation of iron-containing pigments is poor • Used in 1-2% aqueous solution
• Precipitates all proteins and adequately preserves
Glutaraldehyde carbohydrates
• A strong oxidizing agent
• Made up of 2 formaldehyde residues, linked by 3
• Not used because it is hazardous
carbon chains
• For routine light microscopic work Potassium Dichromate
• Buffered glutaraldehyde, followed by secondary
fixation in osmium tetroxide is satisfactory for electron • Used in 3% aqueous solution
microscopy • Fixes but does not precipitate cytoplasmic structures
• Fixation time: ½ hour to 2 hours • Preserves lipids
• Preserves plasma proteins • Preserves mitochondria
• Advantages: Produce less tissue shrinkage
Regaud’s Fluid or Muller’s Fluid
• Disadvantages: Reduces PAS positivity of reactive
mucin. • Fixation time: 12-48 hours
• Penetrates tissues well
Metallic Fixatives
• Hardens tissues better and more rapidly than Orth’s
Mercuric Chloride fluid
• Recommended for demonstration of chromatin,
• Most common metallic fixative. mitochondria, mitotic figures, Golgi bodies, RBC and
• Nuclear components are shown in fine detail. colloid-containing tissues. GMRC
• Routine fixative of choice for preservation of cell detail
in tissue photography Orth’s Fluid
• Trichrome staining is excellent. Permits brilliant
• Fixation time: 36-72 hours
metachromatic staining of cells.
• Recommended for study of early degenerative
• Excellent for trichrome staining (collagen)
processes and tissue necrosis
• Recommended for renal tissue, fibrin, connective
• Demonstrates Rickettsiae and other bacteria
tissues and muscles.
• Preserves myelin better than buffered formalin
• Avoid using metal caps, jewelries.
Lead Fixative
Zenker-formol (Helly’s Solution)
• Used in 4% aqueous solution of basic lead acetate
• Fixation time: 12-24 hours
• Recommended for acid mucopolysaccharides
• Excellent microanatomic fixative for pituitary gland,
• Fixes connective tissue mucin
bone marrow, and blood containing organs such as
• Takes up carbon dioxide to form insoluble carbonate
spleen and liver
especially on prolonged standing
• Penetrates and foxes tissues as well
• Nuclear fixation and staining is better than Zenker’s Picric Aid Fixative
fluid
• Normally used in strong saturated aqueous solution
Heidenhain’s Susa Solution (1%)
• Excellent fixative for glycogen demonstration
• Recommended mainly for tumor biopsies especially of
• Penetrates tissues well and fixes small tissues rapidly
the skin
• Also dyes the tissues. Allows brilliant staining with the
• Excellent cytologic fixative
Trichrome method.
• Fixation time: 3-12 hours
• Bouin’s Solution
• Penetrates and fixes tissues rapidly and evenly
o Recommended for fixation of embryos and
• Produces brilliant results with sharp nuclear and
pituitary biopsies. Excellent fixative for preserving
cytoplasmic details
soft and delicate structures
• After fixation, tissue should be transferred directly to
o Fixation time: 6-24 hours
high grade alcohol to avoid swelling.
o Produces minimal distortion of microanatomical
B-5 Fixative structures
o Permits brilliant staining of tissues
• Commonly used for bone marrow biopsies o Preserves glycogen
• Rapid fixation can be achieved in 1 ½-2 hours o Does not need washing out
• Brasil Alcoholic Picroformol Fixative
o Better and less messy than Bouin’s solution o Recommended for cytoplasmic structures
o Excellent fixative for glycogen particularly the mitochondria
o Fixation time: 24-48 hours / 1-2 days
Alcohol Fixatives
Trichloroacetic Acid
• Rapidly denatures and precipitates proteins by
destroying hydrogen and other bonds • Precipitates proteins
• Must be used in concentrations raging from 70% - • Can be used as a weak decalcifying agent and a fixative
100% because less concentrated solution will produce at the same time
lysis of cells. • Its softening effect on dense fibrous tissues facilitates
• Absolute Alcohol preparation of such sections
o Used to fix and preserve glycogen, pigments, • Disadvantage: Poor penetrating agent
blood, tissue films and smears. • Suitable only for small pieces of tissues or bones
o The color of the specimen can be preserved for
photographic works using 80% alcohol Acetone
o It is ideal for small tissue fragments
• Used at ice cold temperature ranging from -5°C to 4°C
o Excellent for glycogen preservation
• Recommended for the study of water diffusible
o Preserves nuclear stains
enzymes especially phosphatases and lipases
• Methyl Alcohol
• Used in fixing brain tissues for diagnosis of rabies
o Excellent for fixing dry and wet smears, blood
• Used as a solvent for certain metallic salts to be used in
smears and bone marrow tissues
freeze substitution techniques for tissues blocks
o Fixes and dehydrates at the same time
o Penetration is slow • It dissolves fat and preserves glycogen poorly
o Tissues may be overhardened and difficult to cut if • Evaporates rapidly
left for more than 48 hours. Heat Fixation
• 95% Isopropyl Alcohol
o Used for fixing touch preparations • Involves thermal coagulation of tissue protein for rapid
• Ethyl Alcohol diagnosis
o Used at concentrations of 70% to 100%
Microwave Technique
o Used as simple fixative
o Fixation time: 18-24 hours • Works as physical agent to increase the movement of
o Preserves but does not fix glycogen molecules and accelerates fixation.
o Preserves nucleoproteins and nucleic acid, hence • Used to accelerate staining, decalcification,
used for histochemistry and enzyme studies. immunohistochemistry and electron microscopy.
• Carnoy’s Fluid
o Recommended for fixing chromosomes. Lymph Secondary Fixation
glands and urgent biopsies
o Used to fix brain tissues for the diagnosis of rabies • Is the process of placing an already fixed tissue in a
o Fixation time: 1-3 hours second fixative.
o Considered as the most rapid fixative Post-Chromatization
o Fixes and dehydrates at the same time
o Permits good nuclear staining and differentiation • Form of secondary fixation
• 2.5-3% potassium dichromate for 24 hours to acts as
Osmium Tetroxide mordant for better staining and aid in cytologic
• Fixes conjugated fats and lipids permanently by making preservation of tissues.
them insoluble Washing Out
• Preserves cytoplasmic structures well such as Golgi
bodies and mitochondria • The process of removing excess fixative from the tissue
• Fixes myelin and peripheral nerves, it is used after fixation
extensively for neurological tissues • Solution used for Washing Out
• Produces brilliant nuclear staining with safranin 1. Tap water used to remove:
• It adequately fixes materials for ultrathin sectioning in ❖ Hellys, Zenkers Flemming
electron microscopy. ❖ Formalin
• Flemming’s Solution ❖ Osmic acid
o Most common chrome-osmium acetic acid fixative 2. 50-70% alcohol
o Fixation time: 24-48 hours ❖ Picric acid (Bouin’s)
o Excellent fixative for nuclear structures 3. Alcoholic iodine
o Permanently fixes fat ❖ Mercuric fixative
• Flemming’s Solution Without Acetic Acid
o Made up of only chromic acid and osmic acid
• Retarded by:
o Size and thickness of the tissue specimen
❖ Larger tissues require more fixatives and
longer fixation time
o Presence of mucus
❖ Tissue chain contain mucus are fixed slowly
and poorly
o Presence of fat
❖ Fatty tissues should be cut in thin sections and
fixed longer
o Presence of blood
❖ Tissues containing blood large amount of
blood should be flushed out with saline before
fixing
o Cold temperature
❖ Inactivates enzymes
• Enhanced by:
o Size and Thickness of Tissue
❖ Smaller and thinner tissues require less fixative
and shorter fixation time
o Agitation
❖ Fixation is accelerated when automatic or
mechanical tissue processing is used.
o Moderate heat (35-56°C)
❖ Accelerates fixation but hastens autolytic
changes and enzymes destruction
Fixation Artefacts
• Formalin Pigment
o Known artefact produced under acid conditions
o Reduced by fixation in phenol-formalin
o Color black/brown stain under the microscope
• Crush Artefact
o Found in surgical specimen (liver biopsies)
o Associated with an intense eosinophilic staining
o Due to partial coagulation of protein by ethanol
o Incomplete wax impregnation
Difficulties Causes
Failure to arrest early Failure to fix immediately
autolysis of cells Insufficient fixative
Removal of substances Wrong choice of fixative
soluble in fixing agent
Loss or inactivation of
enzymes needed for study
Presence of artefact Incomplete washing of
pigments on tissue sections fixative
Tissues are soft and feather- Incomplete fixation
like in consistency
Shrinkage and swelling of Over fixation
cells and tissue structures
Tissue blocks are brittle and Prolonged fixation
hard
o Does not require washing out before dehydration • A layer of ion exchange resin (1/2 thick) is used over
o Recommended for teeth and small pieces of bone the bottom of the container and the specimen is placed
• Formic Acid on top of it. Then the decalcifying agent is added.
o Moderate acting decalcifying agent which produces • The tissue may stay for 1-14 days. The degree of
better nuclear staining with less tissue distortion. decalcification may be measured by physical or X-ray
May be used as a fixative and decalcifying agent method.
o Safer to handle than nitric acid or hydrochloric acid
o Recommended for routine decalcification of Electrophoresis
postmortem research tissues
• A process whereby positively charged calcium ions are
o Decalcification time: 2-7 days
attracted to a negative electrode and subsequently
o Recommended for small pieces of bones and teeth removed from the decalcifying solution.
o Suitable for routine surgical specimens, when
• This method is satisfactory for small bone fragments,
immunohistochemical staining is needed.
processing only a limited number of specimens at a
o Relatively slow, not suitable for urgent works
time.
o Requires neutralization with 5% sodium sulfate and
• Good cytologic and histologic details are not always
washing out.
preserved.
• Formic Acid – Sodium Citrate Solution
o Decalcification time: 3-14 days Factors Influencing Rate of Decalcification
o Permits better nuclear staining than nitric acid
method • Structure
o Recommended for autopsy materials, bone marrow, o High concentration and greater amount of fluid will
cartilage and tissues studied for research purposes. increase the speed of the process
• Trichloroacetic Acid o The concentration and the amount of
o Decalcification time: 4-8 days decalcification is directly proportional to the rate
o Permits good nuclear staining of decalcification.
o Does not require washing out • Temperature
o Suitable only for small spicules of bone o 37°C impaired nuclear staining of Van Gieson’s
• Sulfurous Acid stain for collagen fibers
o Very weak decalcifying agent suitable only for o 55°C tissue will undergo complete digestion within
minute pieces of bone 24-48 hours
• Chromic Acid (Flemming’s Fluid) o RT (room temperature) range of 18-30°C
o May be used as a fixative and a decalcifying agent • Volume
o Used to decalcify minute bone spicules o Ratio 20:1
o Nuclear staining with hematoxylin is inhibited • Time
o Forms precipitates at the bottom, which requires o 1-2 days/24-48 hours ideal time for decalcification
frequent changes of solution o Dense bone tissue – 14 days longer
o Degree of decalcification cannot be measure by
Measuring the Extent of Decalcification
routine chemical test.
• Physical or Mechanical Test
Chelating Agent
o Done by touching with the fingers to determine the
• Ethylene Diamine Tetraacetic Acid (EDTA) consistency of tissue.
o Combines with calcium ions and other salts to form o Bending, needling or by use of scalpel if it bends
weakly dissociated complexes and facilitate easily that means decalcification is complete.
removal of calcium salts. o Pricking, causes damage and distortion of tissue.
o Commercial name: Versene • X-Ray or Radiological Method
o Recommended for detailed microscopic studies o Best method for determining complete
o It is a very slow decalcifying agents decalcification
o For small specimen, 1-3 weeks ▪ *not recommended on issue fixed mercuric
o For dense cortical bone, it will take 6-8 weeks to chloride, (radio opacity).
decalcify • Chemical Method (Calcium Oxalate Test)
o pH must be 6.5 – 7.4 o Simple, reliable and convenient method for routine
o EDTA is used for immunohistochemical, enzyme purposes
staining and electron microscopy o Detect Ca in the decalcifying solution by
o EDTA inactivates alkaline phosphatase activity precipitation of insoluble calcium hydroxide or
calcium oxalates.
Ion Exchange Resin
Post-Decalcification
• Ammonium form of polystyrene resin that hastens
decalcification by removing calcium ions from formic • The removal of acid from tissue or neutralized
acid containing decalcifying solutions. chemically by immersing the specimen either saturated
• Not recommended for fluids containing mineral acids lithium carbonate solution or 5-10% aqueous sodium
such as nitric acid or hydrochloric acid. bicarbonate solution for several hours.
Tissue Softeners
• Ethylene glycol ether is combustible at 110°F to 120°F o Should not dissolve out aniline dyes
and is toxic. o Should not evaporate quickly in a water bath
• Propylene based glycol ether should be used instead. o Should make tissues transparent
• Common Clearing Agents Used
Triethyl Phosphate o Xylene
• It removes water very readily and produces very little ▪ It is colorless, clearing agent that is most
commonly used in the laboratory
distortion and hardening of tissue.
▪ It is most rapid clearing agent suitable for
• It is used to dehydrate sections and smears following
agent biopsy.
certain stains and produces minimum shrinkage.
▪ Clearing time: .5-1 hour
Tetrahydrofuran ▪ It makes the issue transparent
▪ Does not extract aniline dye
• It is both a dehydrating agent and clearing agent since it ▪ Can be used for celloidin sections because it
is miscible in both water and paraffin. does not dissolve celloidin
• It may be used for demixing, clearing and dehydrating ▪ It is cheap
paraffin sections before and after staining. ▪ Disadvantages:
• It causes less shrinkage and easier cutting of sections Highly flammable
with fewer artefacts. If used longer than 3 hours, it will make
• It does not dissolve aniline dyes the tissues excessively hard and brittle
• It is toxic if ingested or inhaled Not suitable for nervous tissues and lymph
nodes (causes considerable hardening and
Additives to Dehydrating Agents shrinkage of tissues)
4% phenol + each 95% ETOH baths Xylene becomes milky when an
incomplete dehydrated tissue is immerse
• Acts as a tissue softener for hard tissues such as in it.
tendons, nails, or dense fibrous tissues. o Toluene
▪ May be used as a substitute for xylene or
Anhydrous Copper Sulfate benzene
• It acts both as a dehydrating agent and as an indicator of ▪ Clearing time: 1-2 hours
water content of the last bath. ▪ Acts fairly rapidly and is recommended for
routine purposes
• To insure complete dehydration, a layer of anhydrous
▪ Tissues do not become excessively hard and
copper sulfate, about ¼ inch deep is placed in the
brittle if left for 24 hours
bottom of the container and covered with filter paper.
▪ It is not carcinogenic
This will accelerate dehydration by removing water
▪ Disadvantages:
from the dehydrating fluid. A bloodiest coloration of
Relatively slower than xylene and benzene
copper sulfate crystals will indicate full saturation of
Tends to acidify in a partially filled vessel
dehydrating fluids with water. Alcohol is then discarded
More expensive
and changed with a fresh solution.
o Benzene
• Anhydrous copper sulfate color blue discoloration.
▪ It is preferred as clearing agent in embedding
Clearing (De-alcoholization) process of tissues because it penetrates and
clears tissues rapidly.
• The process whereby alcohol or a dehydrating agent is ▪ Clearing time: 15-60 minutes
removed from the tissue and replaced with a substance ▪ Volatizes rapidly in paraffin oven, easily
that will dissolve the wax with which the tissue is to be removed in the tissue
impregnated. ▪ Does not make tissues hard and brittle but it
• Process of replacing the dehydrating fluid with a fluid causes minimum shrinkage
that is miscible with both dehydrating fluid, ▪ It makes tissues transparent.
impregnating or embedding medium. ▪ Disadvantages:
• Most commonly used clearing agents are xylene, It is highly flammable
dioxane, chloroform, and cedarwood oil. If section is let in benzene for a long time,
• The clearing agent will make microscopic tissue considerable tissue shrinkage may be
preparations transparent due to their high index of observed.
refraction. Excessive exposure to this reagent it is
• Characteristics of a Good Clearing Agent very toxic and carcinogenic to human.
o Miscible with alcohol to promote rapid removal of It may caused or damaged the bone
the dehydrating agent marrow and it may result to aplastic
o Should be miscible with and easily removed by anemia.
melted paraffin wax. o Chloroform
o Should not produce excessive shrinkage, hardening ▪ Slower in action than xylene but causes less
or damage of tissue. brittleness
▪ Suitable for large tissue specimens. Thicker ▪ It is non-toxic but has offensive odor and
tissue blocks (up to 1 cm) are can be should be used in a well-ventilated room.
processed. o Methyl Benzoate and Methyl Salicylate
▪ Clearing time: 6-24 hours ▪ Slow-acting clearing agents that can be used
▪ It is recommended for tough tissues, nervous when double embedding techniques are
tissues, lymph nodes, and embryos required.
▪ Not flammable o Glycerin and Gum Syrup
▪ Disadvantage: ▪ Are used when the tissue is to be cleared
Relatively toxic to the liver after directly from water, as in a frozen section.
prolonged inhalation
Wax impregnation after chloroform
clearing is relatively slow
Does not make tissues transparent
Difficult to remove from paraffin sections
because it is not very volatile
Complete clearing is difficult to evaluate
o Cedarwood oil
▪ It is used to clear both paraffin and celloidin
sections during embedding process
▪ It is recommended for central nervous tissue
and cytological studies
▪ Clearing time: 2-3 days
▪ Very penetrating clearing agent
▪ Clears celloidin in 5-6 days
▪ Does not dissolve aniline dyes
▪ Makes tissues transparent
▪ Disadvantage:
Extremely slow clearing agent, not
recommended for routine purposes
Becomes milky upon prolonged storage
and should not be filtered before use
Very expensive
o Aniline oil
▪ Not normally utilized as a routine clearing
agent
▪ Recommended for clearing embryos, insects,
and very delicates specimens due to its ability
to clear 70% alcohol without excessive tissues
shrinkage and hardening.
o Clove Oil
▪ Causes minimum shrinkage of tissues
▪ Its quality is not guaranteed due to its tendency
to become adulterated
▪ Wax impregnation after clearing with clove oil
is slow and difficult
▪ Tissues become brittle, aniline dyes are
removed and celloidin is dissolved
▪ Expensive solution – unsuitable for routine
clearing purposes
o Carbon Tetrachloride
▪ Its properties are similar to chloroform
although it is relatively cheaper
▪ Same disadvantage of chloroform
▪ It produces considerable tissue hardening and
dangerous to inhale on prolonged exposure due
to its highly toxic effects.
o Tetrahydrofuran*
▪ Tetrahydrofuran is superior to ordinary
dehydrating and clearing agents due to its
ability to perform two processes at the same
time thereby shortening the total processing
time and allowing more time for fixation.
Two Methods for Celloidin Impregnation • Used to facilitate cutting of large block of dense
firm tissue like the brain.
1. Wet Celloidin – recommended for bones, teeth, large
brain sections and whole organs. Types of Blocking – Out Embedding Molds
2. Dry Celloidin – preferred for processing of whole eye
sections. A. Leuckhart’s Embedding Mold
• Consist of two L-shaped strips of heavy brass of metal
Nitrocelllulose Method arranged on a flat metal plate and which can be moved
to adjust the size of the mold to the size of the specimen
• Low Viscosity Nitrocellulose (L.V.N.) is another form
of celloidin soluble in equal concentration of ether and
alcohol, with lower viscosity, allowing it to be used in
higher concentration and still penetrate tissue rapidly
• It forms a harder tissue block and makes cutting of
thinner sections possible
• The tendency to tissues to crack may be prevented by
adding plasticizers (oleum ricini or castor oil) when
embedding chrome-mordanted tissues.
• L.V.N. is more explosive than celloidin.