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2022 Synthesis, Characterization, Computational, Anticancer and Anti-Inflammatory Studies of Pregabalin Esters and Their Complexeswith Heavy Metals
2022 Synthesis, Characterization, Computational, Anticancer and Anti-Inflammatory Studies of Pregabalin Esters and Their Complexeswith Heavy Metals
a r t i c l e i n f o a b s t r a c t
Article history: The current study entails a series of pregabalin ester complexed with zinc and copper; further character-
Received 22 June 2021 ized by spectroscopic techniques and biological assays. Docking analysis revealed three complexes with
Revised 17 February 2022
favorable binding interactions which were further subjected to in-vitro anti-inflammatory and anticancer
Accepted 4 May 2022
activities. The complex-5 displayed most potent anti-inflammatory activity against Luminol-enhanced
Available online 18 May 2022
Chemiluminescence assay with IC50 value of 7.7 ± 0.8 μM as compared to standard Ibuprofen with IC50
Keywords: value of 11.2 ± 1.9 μM; whereas none of them showed significant outcomes against HeLa cell lines for
Pregabalin antiproliferative activity as compared with standard doxorubicin. Computational studies were carried out
Esters using the reported crystal structure of multidrug resistant Alpha2S protein (PDB-ID: 6ND9), neurokinin-
Auto dock 1 receptor (PDB-ID: 2KSA) and dihydrofolate reductase (PDB-ID: 3GHW); indicating the compound 3
Luminol showed significant interactions at all receptors. As the analogues were more active than parent drug in
Antitumor
some respects; therefore, the expansion of the project can be planned to carry out more pharmacological
Anti-inflammatory
screening.
© 2022 Elsevier B.V. All rights reserved.
https://doi.org/10.1016/j.molstruc.2022.133234
0022-2860/© 2022 Elsevier B.V. All rights reserved.
A. Asbat, F. Saleem, S. Najm et al. Journal of Molecular Structure 1264 (2022) 133234
Scheme 1. General scheme of synthesis of pregabalin derivatives and their metal complexes (Zn and Cu).
M = ZnCl2, Cu(CH3 COO)2. H2 O 1=pregabalin; 2=formaldehyde; 3=Ligand formaldehyde with PGB; 4 a, b = pregabalin ester with metal complexes (Zn and Cu).
ing studies was planned and assessed their interactions against α 2- 4.69 for NH2 group. All other peaks at 2.24, 2.86 and 4.69 showed
δ −1 subunit (PDB-ID: 6ND9); neurokinin-1 (PDB ID: 2KSA) and di- presence of -CH3 group. Resultantly, above mentioned peaks con-
hydrofolate reductase (PDB ID: 3GHW). The findings explored the firm the structure of compound 3. 1 HNMR data of compound 4a
significant anticancer and anti-inflammatory potential PGB deriva- showed singlet peak at δ = 3.55 for -CH3 functional group and also
tives, making them suitable for advanced pharmacological screen- showed a clear singlet at δ = 4.70 which indicated the presence of
ing. –NH2 group and hence this spectroscopic analysis shows the con-
firmation of 4a. The absorption bands at 3266.8, 2963.9, 1669.8,
1546.8, 1485, 1388.4 and 1276.6 cm−1 confirmed the presence of
2. Results and discussion NH, -CH, -C=O, -NH2, -CH3,=CH2 and C-O, respectively so we have
seen the confirmation of compound 4b via this spectroscopic anal-
2.1. Chemistry ysis.
2
A. Asbat, F. Saleem, S. Najm et al. Journal of Molecular Structure 1264 (2022) 133234
Table 1
Binding properties of receptor proteins to different ligands.
Molecular Active Receptors Interacting Efficacy Least Binding Inhibition Torsional No. of Interacting residues
Formula compound Protein(PDB energy (kcal/mol) Constant energy hydrogen
ID) (μM) bonds
C9H19NO2 3 α 2-δ −1 6ND9 Anticonvulsant −5.41 125.7 0.89 1 LEU72, ARG73, CYS81,
GLN102, MET103,
CYS104, GLN105,
TYR118,
C8H17NO2 PGB α 2-δ −1 6ND9 Anticonvulsant −5.19 157.4 0.6 1 ARG73, MET103,
CYS104, GLN105,
TYR118
C9H19NO2 3 NK1R 2KSA Anti-Inflammatory −6.41 20.15 0.89 1 LEU5, PRO6, VAL7,
THR173, MET174,
TRP184, PRO185
C13H18O2 IBU NK1R 2KSA Anti-Inflammatory −6.47 31.63 1.19 1 VAL66, THR65,
ARG130, ALA133,
HIS136, LEU138,
ARG141, LEU142,
LYS243
C9H19NO2 3 DHFR 3 ghw Anti-cancer −6.73 62.93 0.89 0 ASP21, LEU22, PHE34,
THR56, SER59, ILE60,
VAL115
C27H29NO11 DOX DHFR 3 ghw Anti-cancer −6.96 7.94 0.89 0 ILE7, VAL8, ILE16,
GLY17, ASP21, LEU22,
GLU30, PHE31, PHE34,
SER59, PRO61, ASN64,
GLY116, GLY117,
TYR121
Fig. 1. (A) Docked structure of PGB shown in orange color; with modelled 6ND9
receptor with interacting residues shown in blue color; blue dashes show hydrogen
bonding calculated by PLP. (B) The 2D interacting diagram of ligand prepared from Fig. 2. (A) Docked ligand (3) was shown in orange color with blue colored amino
protein plus online server. (C) Ligand-receptor interaction calculated by auto dock; acid residues (GLN105, and TYR118) in the binding pocket of 6ND9 calculated by
the binding energy of docked complex was found to be −5.19 Kcal/mole implies PLP, the binding energy of docked complex was found to be −5.41 Kcal/mol implies
more stable structure. more stable structure. (B) Two dimensional binding interaction of ligand show one
hydrogen bond at receptor site. (C) Docked structure of 3 with modelled 6ND9 re-
ceptor for anticonvulsant activity with interacting residues calculated by Auto Dock.
3
A. Asbat, F. Saleem, S. Najm et al. Journal of Molecular Structure 1264 (2022) 133234
Fig. 4. (A) Compound 3 shown in orange color with interacting residues of NK1R shown in blue color in the binding pocket of 2KSA receptor calculated by online PLP
web server. (B) 2D interacting diagram of 3 showing hydrogen bond in the binding pocket of 2KSA enzyme. (C) Docked structure of 3 with modelled 2KSA enzyme with
interacting residues by Auto Dock for anti-inflammatory activity.
Fig. 5. (A) DOX was shown in orange color with blue colored amino acid residues in the binding pocket of 3GHW; calculated by PLP online server. (B) Docked structure of
DOX with modelled 3GHW receptor with interacting residues calculated by Auto Dock for anticancer potential.
4
A. Asbat, F. Saleem, S. Najm et al. Journal of Molecular Structure 1264 (2022) 133234
6. Experimental
6.2. Synthesis
5
A. Asbat, F. Saleem, S. Najm et al. Journal of Molecular Structure 1264 (2022) 133234
6.3. Solubility studies this, HeLa cell line was cultured in Minimum Essential Medium Ea-
gle, accompanied with 5% of fetal bovine serum (FBS), 100 IU/ml
Apparent solubility of all the synthesized metals was deter- of penicillin and 100 μg/ml of streptomycin in 75 cm2 flasks, and
mined. A measured amount of synthesized compounds were dis- preserved in 5% CO2 incubate at 37 °C. Additionally, exponen-
solved in weighed amount of solvent and clarity of solution was tially growing cells were harvested, calculated with hemocytome-
observed. Water, methanol, ethanol, DMSO and chloroform were ter and diluted with a respective media. Cell culture possessing
used for this study. For good solubility the threshold value of the concentration of 6 × 104 cells/ml was prepared and trans-
<0.1/100 ml with the clear colored solution in the given solvent ferred (100 μl/well) into 96-well plates. Medium was removed af-
was considered [13]. ter overnight incubation, and 200 μl of fresh medium was added
with varied concentrations of compounds (1–30 μM). However,
6.3.1. Molecular docking studies 200 μl MTT (0.5 mg/ml) was added in all wells individually after
Docking model was based on 3D crystal structure of α 2-δ −1 48 h and then incubated additionally for 4 h. Successively, 100 μl
subunit (PDB-ID: 6ND9) (https://www.rcsb.org/ structure/6ND9) of DMSO was added to each well separately. The degree of MTT re-
for anti-convulsant activity, neurokinin-1 receptor (PDB-ID: 2KSA) duction to formazan within cells was examined by determining the
(https://www.rcsb.org/structure/2KSA) for anti-inflammatory activ- absorbance at 570 nm, using a micro plate reader. Finally, the cy-
ity and dihydrofolate reductase receptor (PDB-ID: 3GHW) (https:// totoxicity was calculated as concentration causing 50% growth in-
www.rcsb.org/structure/3GHW) for antitumor activity; were re- hibition (IC50) for HeLa cell line [25,26].
trieved from RCSB Protein Data Bank (PDB). ACD/Chemsketch soft- The percent inhibition was calculated by following formula:
ware was used for the 3D structure buildup of various ligands and % age inhibition=100-((mean of O.D of test compound-mean
save as Mol file; Open Babel-GUI 3.0 program was used to convert
of O.D of negative control)/(mean of O.D of positive control-
Mol file to PDB file for automated docking by Auto Dock Tools 1.5.6
software [16]. The docking protocol was tested by removing the mean of O.D of negative control) *100).
co-crystallized inhibitor from the protein and docks it on the same Doxorubicin% inhibition at 30μ = 101.2%
side. Protein structure was added by polar hydrogens and gestesian Doxorubicin IC50 = 0.9 ± 0.14
charges during protein preparation by Auto dock Tools graphical
user interface. The cuboid grid box was used for the computation
with a purpose to embrace all the minimized inhibitors spanning Declaration of Competing Interest
10 A˚ in all three dimensions. The Lamarckian genetic algorithm
(LGA) was used to generate conformations of ligands within the The authors declare that they have no known competing finan-
binding site, with an initial population size of 150 individuals, with cial interests or personal relationships that could have appeared to
a maximum number of 250,0 0 0 energy evaluations, 150,0 0 0 gen- influence the work reported in this paper.
erations with a mutation rate of 0.02, and a cross-over rate of 2
CRediT authorship contribution statement
points. The rigidity parameters were set for the receptor, keeping
the ligand flexible. Out of the ten docked conformations obtained,
Ayesha Asbat: Data curation, Formal analysis, Investigation,
one having the lowest binding energy was selected andthe active
Methodology, Software, Writing – original draft, Funding acqui-
site of enzyme. Root mean square deviation (RMSD) was calculated
sition, Writing – review & editing. Farooq Saleem: Data cura-
and in all cases RMSD value of <2.0 Å was considered significant
tion, Formal analysis, Methodology, Supervision, Validation, Writ-
in predicting binding orientation of ligand [11].
ing – review & editing. Saima Najm: Conceptualization, Data
curation, Formal analysis, Investigation, Methodology, Resources,
6.4. Biological screenings Software, Supervision, Validation, Visualization, Writing – original
draft, Writing – review & editing. Javed Iqbal: Data curation, Fund-
6.4.1. Anti-inflammatory activity ing acquisition, Writing – review & editing. Muhammad Ali Syed:
In-vitro anti-inflammatory activity of ligand esters and their Data curation, Supervision, Writing – review & editing. Sarfraz Ah-
metal complexes were evaluated (7–9). Luminol-enhanced Chemi- mad: Writing – review & editing. Sana Hanif: Formal analysis, In-
luminescence assay was performed, as described by Helfand et al. vestigation, Writing – review & editing. Muhammad Azeem: Data
[22]. For this purpose, 25 μl of diluted whole blood HBSS++ (Hanks curation, Investigation, Writing – review & editing.
Balanced Salt Solution, containing calcium chloride and magne-
sium chloride) was incubated with 25 μl of three varied concen- Acknowledgement
trations of compounds (1, 10 and 100 μg/ml), each in triplicate.
Both (HBSS++ and cells having no compounds) were introduced The authors are grateful Muhammad Mubbashir Khan (Quality
into control wells. Test was implemented in white half area of 96 Control Manager), Briell Pharmaceuticals (Pvt.) Ltd, Lahore-Pakistan
well plates and was incubated at 37 °C for 15 min in the ther- for his skillful assistance in recording FTIR. Thanks are also due
mostat chamber of luminometer. Subsequently, 25 μl of serum op- to Quaid-e-Azam University Islamabad for characterization of com-
sonized zymosan (SOZ) and 25 μl of intracellular reactive oxygen pounds and International center for Chemical and Biological sci-
species detecting probe, luminol were added into all wells individ- ences (Karachi) for ESI-MS and in-vitro (anti-inflammatory and
ually except the blank which possessed only HBSS++. The level of anti-cancer) studies of synthesized chemical compounds.
the reactive oxygen species (ROS) was examined in luminometer in
the form of relative light units (RLU) (10, 11). Moreover, standard Supplementary materials
drug used for the assay was Ibuprofen with IC50 = 11.2 ± 1.9 μM
[22–24]. Supplementary material associated with this article can be
found, in the online version, at doi:10.1016/j.molstruc.2022.133234.
6.4.2. Anticancer activity
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