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#################################################################

# If you used AutoDock Vina in your work, please cite: #


# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\10Z_Heptadecenoic_acid_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -518292224
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.7 0.000 0.000
2 -4.7 2.783 6.694
3 -4.6 5.375 7.722
4 -4.6 2.181 5.209
5 -4.5 7.042 10.682
6 -4.5 4.677 8.499
7 -4.5 2.851 5.265
8 -4.5 2.403 4.799
9 -4.3 7.292 11.037
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\11_Deoxocucurbitacin_I_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -342708220
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -7.0 0.000 0.000
2 -6.7 3.937 8.549
3 -6.7 3.486 7.363
4 -6.5 2.579 8.522
5 -6.5 5.931 9.303
6 -6.5 3.628 5.965
7 -6.4 7.260 9.922
8 -6.3 2.332 8.356
9 -6.3 3.835 5.810
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\12_oxo_Phytodienoic_Acid_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 1945923424
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.6 0.000 0.000
2 -5.2 1.972 5.938
3 -5.1 2.164 5.719
4 -5.1 1.819 5.182
5 -5.0 2.872 6.116
6 -5.0 1.468 2.187
7 -4.8 2.834 5.931
8 -4.7 4.241 8.032
9 -4.6 2.273 3.445
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


1345_Tetrahydroxycyclohexanecarboxylic acid_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -325651656
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.0 0.000 0.000
2 -4.9 3.277 5.023
3 -4.7 1.044 3.020
4 -4.5 1.386 2.023
5 -4.5 2.472 3.422
6 -4.4 1.993 3.682
7 -4.4 1.515 3.433
8 -4.4 2.687 3.623
9 -4.2 2.887 4.458
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


1345_Tetrahydroxycyclohexanecarboxylic_acid_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -724617148
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.0 0.000 0.000
2 -4.8 3.430 5.266
3 -4.5 2.479 3.439
4 -4.5 3.567 5.509
5 -4.4 2.002 3.740
6 -4.4 1.509 3.477
7 -4.4 2.734 3.687
8 -4.1 9.686 11.606
9 -4.1 13.747 15.547
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\1368_Naphthalenetetrol_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 2000603620
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.2 0.000 0.000
2 -6.1 0.050 4.137
3 -5.8 1.194 4.817
4 -5.7 1.193 3.114
5 -5.7 1.577 3.885
6 -5.6 1.552 2.384
7 -5.5 1.933 2.950
8 -5.5 1.957 4.219
9 -5.5 1.276 4.855
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


13S_hydroxyoctadecadienoic_acid_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 1276369376
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.2 0.000 0.000
2 -5.2 4.241 7.390
3 -5.0 2.251 3.700
4 -5.0 2.580 5.596
5 -4.9 1.374 6.107
6 -4.9 2.347 6.854
7 -4.8 4.025 6.035
8 -4.8 2.046 5.068
9 -4.8 2.913 4.673
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\13_S_HpOTrE_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -165590640
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.9 0.000 0.000
2 -5.9 2.356 2.887
3 -5.7 1.912 8.860
4 -5.7 2.251 7.514
5 -5.7 3.298 6.693
6 -5.6 2.202 7.359
7 -5.5 4.052 8.890
8 -5.5 2.214 8.264
9 -5.5 1.893 8.430
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


22_Bis_4_Hydroxy_3_Methylphenyl_Propane_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1377492032
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.9 0.000 0.000
2 -4.7 2.419 4.744
3 -4.7 4.227 6.170
4 -4.6 7.068 9.183
5 -4.6 6.822 8.877
6 -4.5 1.913 4.087
7 -4.5 4.700 8.509
8 -4.4 6.224 9.509
9 -4.3 2.075 5.399
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


2_Dodecylbenzenesulfonic_acid_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 160877824
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.4 0.000 0.000
2 -5.4 1.601 2.883
3 -5.4 0.931 3.168
4 -5.4 1.619 2.794
5 -5.3 1.514 3.097
6 -5.3 3.216 6.224
7 -5.2 1.594 2.209
8 -5.0 3.479 6.900
9 -4.9 1.226 2.568
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\2_morpholinoacetic_acid_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -221209760
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.5 0.000 0.000
2 -4.5 2.059 2.835
3 -4.1 1.864 2.693
4 -4.1 0.997 1.865
5 -4.0 3.026 5.196
6 -4.0 2.704 3.317
7 -3.9 1.692 4.529
8 -3.8 2.995 5.419
9 -3.8 2.608 5.002
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\3_BHA_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 835203036
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.
mode | affinity | dist from best mode
| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.3 0.000 0.000
2 -5.1 1.390 1.520
3 -4.8 1.544 4.314
4 -4.8 1.478 2.080
5 -4.8 2.184 4.441
6 -4.7 2.053 4.312
7 -4.3 2.008 3.538
8 -4.3 10.812 12.368
9 -4.3 1.484 3.692
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\4_beta_Phorbol_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 821344408
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.3 0.000 0.000
2 -5.8 4.035 5.517
3 -5.8 3.859 7.745
4 -5.7 8.419 11.107
5 -5.7 3.214 6.439
6 -5.7 9.033 10.855
7 -5.7 2.658 5.415
8 -5.5 10.429 12.717
9 -5.5 2.112 4.724
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\8E_Amino_octadecene_triol_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 490747920
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.8 0.000 0.000
2 -4.6 3.839 6.663
3 -4.5 3.693 6.549
4 -4.5 5.846 7.604
5 -4.5 4.010 6.675
6 -4.4 3.823 6.511
7 -4.3 3.011 4.439
8 -4.3 1.615 2.273
9 -4.3 3.322 4.627
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\9Z_9Octadecenamide_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1199317532
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.8 0.000 0.000
2 -4.7 6.244 8.422
3 -4.6 5.492 8.107
4 -4.6 3.731 5.845
5 -4.6 3.624 5.286
6 -4.4 4.245 7.061
7 -4.4 2.078 3.805
8 -4.4 2.283 4.516
9 -4.3 5.254 8.145
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Acarbose_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -330654408
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.2 0.000 0.000
2 -6.2 3.895 5.873
3 -6.0 1.597 2.801
4 -6.0 4.353 6.107
5 -5.9 3.540 9.857
6 -5.8 4.389 6.171
7 -5.8 5.145 11.523
8 -5.7 5.251 11.738
9 -5.7 5.134 7.330
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Acetoxy_dimethyl_methylene_oxo_decahydrooxireno_cyclodeca_furan_yl_methacrylate_out
.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 621622528
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.7 0.000 0.000
2 -6.6 2.078 7.140
3 -6.1 2.395 7.070
4 -5.7 7.703 9.758
5 -5.7 3.930 7.190
6 -5.6 3.099 7.579
7 -5.5 2.971 4.983
8 -5.2 7.332 9.271
9 -5.1 2.752 7.198
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Adenine_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 1060963584
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.1 0.000 0.000
2 -5.1 0.906 2.426
3 -5.0 0.863 3.669
4 -5.0 0.824 2.901
5 -4.7 0.990 2.524
6 -4.6 2.553 3.116
7 -4.5 2.016 3.755
8 -4.5 1.925 3.394
9 -4.4 1.874 4.419
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Amino_deoxy_O_D_galactopyranosyl_D_glucose_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1471701884
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.5 0.000 0.000
2 -5.3 2.056 4.114
3 -5.1 2.131 6.709
4 -4.9 1.685 2.707
5 -4.9 2.723 4.159
6 -4.8 2.036 5.850
7 -4.6 2.253 5.603
8 -4.6 1.860 5.814
9 -4.6 8.896 11.180
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Androstenedione_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1506658944
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.5 0.000 0.000
2 -6.3 2.503 6.301
3 -6.3 4.301 6.085
4 -6.2 4.908 7.215
5 -5.9 10.520 12.178
6 -5.8 4.030 5.543
7 -5.5 9.283 11.967
8 -5.3 10.311 13.196
9 -5.3 6.163 10.011
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Anhydro_tetrahydroxy_oxo_xanthenyl_hexitol_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 1129951344
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.7 0.000 0.000
2 -6.7 4.213 5.710
3 -6.6 5.267 7.526
4 -6.5 5.812 8.946
5 -6.3 4.120 5.405
6 -6.3 7.567 11.180
7 -5.9 1.895 8.776
8 -5.9 4.791 6.608
9 -5.8 2.216 8.852
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\aromadendrin_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 803259576
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.6 0.000 0.000
2 -6.3 1.808 2.252
3 -6.2 1.773 3.210
4 -6.2 1.747 6.977
5 -6.0 2.892 4.321
6 -6.0 4.310 7.547
7 -6.0 3.765 5.748
8 -5.9 2.044 6.913
9 -5.9 2.691 6.742
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Bellidifolin_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -299035768
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.2 0.000 0.000
2 -6.2 1.205 5.688
3 -6.0 9.420 11.214
4 -5.9 2.298 3.730
5 -5.9 1.214 1.516
6 -5.8 2.231 5.718
7 -5.7 2.112 6.485
8 -5.5 1.605 5.878
9 -5.5 2.044 5.432
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Bis_ethylhexyl_phthalate_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -163941824
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.1 0.000 0.000
2 -5.8 2.139 7.985
3 -5.7 2.746 7.457
4 -5.7 2.345 7.628
5 -5.7 0.820 2.230
6 -5.7 1.847 7.871
7 -5.6 1.409 2.920
8 -5.6 1.878 4.060
9 -5.5 3.020 6.982
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Boldione_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 601165072
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.6 0.000 0.000
2 -6.5 3.186 5.811
3 -6.5 3.768 5.328
4 -6.5 4.062 5.916
5 -6.3 2.327 6.168
6 -6.3 4.777 6.829
7 -6.3 1.483 6.650
8 -5.9 4.848 6.251
9 -5.8 10.628 12.305
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Carboxypropyl_amino_deoxy_beta_D_fructofuranose_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1569627360
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.6 0.000 0.000
2 -5.6 2.090 6.606
3 -5.4 2.780 6.804
4 -5.1 10.310 11.641
5 -5.1 2.251 2.645
6 -5.1 2.304 6.485
7 -4.9 3.213 6.434
8 -4.8 2.195 7.441
9 -4.8 3.111 7.399
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Choline_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 2038950400
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -2.9 0.000 0.000
2 -2.7 8.492 9.164
3 -2.7 1.665 2.247
4 -2.7 9.088 9.938
5 -2.6 2.838 3.687
6 -2.6 1.224 2.055
7 -2.6 11.176 12.088
8 -2.6 9.302 10.133
9 -2.6 9.267 10.044
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Curcumene_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 1181420160
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.8 0.000 0.000
2 -5.7 1.646 3.241
3 -5.7 2.294 4.532
4 -5.7 1.314 6.359
5 -5.6 1.055 2.128
6 -5.5 2.162 4.465
7 -5.5 2.751 6.162
8 -5.4 3.263 6.346
9 -5.4 2.263 6.419
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Cyclohexylmethyl_oxazolyl_methyl_piperidinyl_pyridinylmethyl_acetamide_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -355770472
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -7.6 0.000 0.000
2 -7.4 1.823 9.143
3 -7.4 3.737 6.760
4 -7.3 4.265 6.393
5 -7.2 1.512 2.288
6 -7.2 1.914 8.206
7 -7.0 3.944 9.822
8 -7.0 5.056 8.302
9 -6.9 5.221 7.270
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Cynaroside_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 2075195440
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -7.6 0.000 0.000
2 -7.3 1.300 1.383
3 -7.2 3.973 9.214
4 -7.1 4.669 9.849
5 -7.0 5.630 8.538
6 -6.8 4.917 8.007
7 -6.8 3.358 5.755
8 -6.7 3.699 9.576
9 -6.7 4.437 8.939
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


C_methylerythritol_phosphate_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1468605848
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.
mode | affinity | dist from best mode
| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.8 0.000 0.000
2 -4.8 1.219 1.362
3 -4.8 2.445 5.249
4 -4.5 2.906 5.584
5 -4.5 1.672 2.677
6 -4.3 2.472 5.111
7 -4.2 2.550 4.811
8 -4.1 1.600 2.355
9 -4.1 10.012 11.782
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Dibutyl_sebacate_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -293693152
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.6 0.000 0.000
2 -4.5 5.494 9.766
3 -4.4 7.424 10.193
4 -4.4 7.110 10.033
5 -4.3 6.172 8.949
6 -4.3 5.556 8.795
7 -4.3 1.342 7.156
8 -4.2 5.778 8.296
9 -4.2 2.582 7.587
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Dihydroxy_isopropyl_methoxy_tetramethyl_oxo_tetrahydrospiro_pyran_trioxatetracyclo_
pentacosa_dideoxy_O_methyl_alpha_L_arabino_hexopyranoside_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -550780528
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -7.5 0.000 0.000
2 -7.4 1.102 1.819
3 -6.9 4.057 10.967
4 -6.9 3.534 8.987
5 -6.8 2.705 8.086
6 -6.8 2.725 3.995
7 -6.8 2.486 10.495
8 -6.8 2.992 9.326
9 -6.7 3.136 11.427
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Dimethylsulfamoyl_phenyl_naphthyl_oxadiazolyl_sulfanyl_acetamide_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -78886088
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -8.8 0.000 0.000
2 -8.3 1.473 1.756
3 -8.2 3.995 8.706
4 -8.2 4.118 6.105
5 -8.0 4.929 9.330
6 -7.7 3.744 4.427
7 -7.4 5.840 10.315
8 -7.4 5.960 9.262
9 -7.2 3.365 4.088
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\DL_Malic_Acid_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1859378048
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.7 0.000 0.000
2 -4.1 1.437 3.874
3 -4.0 1.030 1.905
4 -3.9 1.298 3.819
5 -3.9 1.952 2.517
6 -3.8 2.485 4.785
7 -3.7 11.632 12.294
8 -3.7 1.938 4.268
9 -3.7 1.511 3.906
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\DL_Stachydrine_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 2093369352
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -3.8 0.000 0.000
2 -3.8 0.286 1.032
3 -3.8 3.171 4.003
4 -3.8 1.422 2.564
5 -3.7 8.828 10.136
6 -3.6 8.933 10.348
7 -3.6 1.845 2.923
8 -3.6 8.233 9.055
9 -3.5 2.251 3.197
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\DL_Valine_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 1248835328
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.2 0.000 0.000
2 -4.1 2.497 3.239
3 -3.9 2.659 3.882
4 -3.8 1.911 3.251
5 -3.7 4.553 5.464
6 -3.6 2.016 2.383
7 -3.6 1.622 2.320
8 -3.5 3.401 4.225
9 -3.5 5.065 5.722
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\D_PANTOTHENIC_ACID_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 937778096
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.8 0.000 0.000
2 -4.7 2.142 5.892
3 -4.6 2.638 4.936
4 -4.6 1.790 5.123
5 -4.6 10.405 11.739
6 -4.6 10.337 11.873
7 -4.5 2.110 5.606
8 -4.5 1.772 2.227
9 -4.4 4.527 6.411
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\D_pos_proline_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 1184871040
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.1 0.000 0.000
2 -4.0 4.795 5.602
3 -4.0 2.468 3.071
4 -3.8 1.996 2.611
5 -3.7 2.903 3.806
6 -3.7 4.104 4.863
7 -3.7 4.296 5.213
8 -3.6 4.704 5.667
9 -3.5 5.243 6.226
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Ethinylestradiol_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1979086176
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -7.6 0.000 0.000
2 -7.3 1.554 6.846
3 -6.8 3.961 6.260
4 -6.6 4.401 7.301
5 -6.5 2.473 4.304
6 -6.5 1.508 2.046
7 -6.3 7.828 10.232
8 -6.2 1.521 3.124
9 -6.2 4.335 7.074
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Ethylparaben_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 947024776
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.6 0.000 0.000
2 -5.3 1.795 2.986
3 -5.1 2.052 3.335
4 -5.0 3.468 6.518
5 -4.9 3.055 5.513
6 -4.8 2.996 4.647
7 -4.7 3.737 6.336
8 -4.7 3.362 5.474
9 -4.6 4.121 6.570
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Gamma_Aminobutyric_acid_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -338887200
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.0 0.000 0.000
2 -3.7 1.767 1.881
3 -3.6 1.130 1.621
4 -3.4 5.274 5.966
5 -3.4 5.308 5.930
6 -3.4 4.036 4.765
7 -3.4 2.379 2.623
8 -3.3 2.998 3.569
9 -3.2 5.437 6.047
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\gibberellin_A12_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 173343056
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.3 0.000 0.000
2 -5.8 1.238 1.512
3 -5.8 2.755 5.242
4 -5.5 10.330 12.942
5 -5.5 2.115 3.946
6 -5.4 10.293 12.135
7 -5.3 9.460 12.117
8 -5.3 2.599 4.354
9 -5.2 2.084 4.522
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Hexose_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 437316496
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.0 0.000 0.000
2 -4.8 1.775 2.371
3 -4.7 1.461 3.895
4 -4.6 1.331 4.341
5 -4.6 1.514 3.867
6 -4.4 1.872 3.707
7 -4.2 2.174 4.122
8 -4.1 1.995 2.179
9 -4.1 2.776 4.089
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Hydroxymethyl_pentamethyl_propionyl_decahydro_spiro_cyclopenta_phenanthrene_furan_d
ione_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 1013573968
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.9 0.000 0.000
2 -6.9 2.355 7.284
3 -6.8 7.134 9.419
4 -6.2 7.789 11.448
5 -6.1 7.296 11.570
6 -6.0 2.426 3.622
7 -6.0 3.781 6.197
8 -6.0 3.675 7.234
9 -6.0 2.802 7.624
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Hydroxy_methoxy_methoxyphenyl_chromenone_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 983432648
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -7.1 0.000 0.000
2 -7.1 0.097 1.042
3 -6.6 2.481 7.659
4 -6.4 1.498 1.789
5 -6.1 2.444 6.709
6 -6.1 3.021 4.456
7 -5.9 3.972 5.331
8 -5.8 9.328 10.535
9 -5.6 4.160 6.200
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\isopropylmalic_acid_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 2067234360
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.2 0.000 0.000
2 -5.1 1.650 3.953
3 -4.5 3.126 5.035
4 -4.5 3.907 5.359
5 -4.4 1.781 3.600
6 -4.4 3.156 4.819
7 -4.4 1.997 3.015
8 -4.3 1.894 4.425
9 -4.3 2.116 3.396
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Isorhamnetin_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 11338104
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.8 0.000 0.000
2 -6.8 2.656 7.199
3 -6.8 1.813 7.109
4 -6.7 1.580 3.380
5 -6.6 1.893 7.144
6 -6.5 2.719 4.663
7 -6.2 2.084 6.920
8 -6.2 2.548 4.526
9 -6.2 3.096 4.897
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Khellin_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1543908328
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.8 0.000 0.000
2 -5.8 1.053 4.469
3 -5.7 1.349 3.271
4 -5.6 1.480 5.709
5 -5.6 1.473 5.660
6 -5.5 1.662 3.933
7 -5.1 2.972 3.793
8 -5.1 1.891 4.865
9 -5.0 1.395 3.747
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Koenigine_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 1021359216
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.9 0.000 0.000
2 -6.8 1.756 6.961
3 -6.5 4.006 7.762
4 -6.3 4.730 7.349
5 -6.3 4.186 6.389
6 -6.1 3.559 7.204
7 -6.0 5.775 9.185
8 -5.8 9.155 11.851
9 -5.7 5.747 7.454
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\kresoxim_methyl_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 797268288
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.5 0.000 0.000
2 -6.4 1.062 2.210
3 -6.1 1.714 5.846
4 -6.0 1.971 5.370
5 -6.0 1.637 2.796
6 -5.9 1.821 3.243
7 -5.8 1.825 3.255
8 -5.8 1.870 5.177
9 -5.8 1.777 2.926
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Luteolin_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -254690316
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -7.1 0.000 0.000
2 -6.8 2.227 3.754
3 -6.8 1.112 2.641
4 -6.7 2.143 7.190
5 -6.6 1.576 7.028
6 -6.6 3.492 6.581
7 -6.5 3.405 7.279
8 -6.4 1.208 7.028
9 -5.9 3.164 5.999
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\L_Phenylalanine_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1141031984
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.
mode | affinity | dist from best mode
| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.0 0.000 0.000
2 -5.6 0.211 1.684
3 -5.4 1.333 1.863
4 -5.3 1.359 2.001
5 -5.3 4.000 5.257
6 -4.9 3.398 4.525
7 -4.8 4.848 6.237
8 -4.8 5.136 6.620
9 -4.4 4.226 5.245
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\L_pos_Isoleucine_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -203450296
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.5 0.000 0.000
2 -4.3 1.757 2.430
3 -4.2 1.976 2.431
4 -3.9 4.360 5.124
5 -3.9 2.988 4.070
6 -3.9 1.957 2.461
7 -3.8 2.286 2.625
8 -3.7 2.550 3.765
9 -3.7 2.802 3.646
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\L_pos_Valine_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -2071911848
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.2 0.000 0.000
2 -4.1 2.504 3.257
3 -3.9 2.646 3.852
4 -3.7 2.435 3.603
5 -3.6 3.096 4.166
6 -3.6 1.957 2.356
7 -3.6 4.993 5.449
8 -3.6 1.791 2.435
9 -3.5 3.957 4.576
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\L_Proline_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 76410240
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.5 0.000 0.000
2 -4.0 2.466 3.161
3 -4.0 1.721 2.210
4 -3.9 2.860 3.584
5 -3.9 1.925 2.458
6 -3.7 14.958 15.956
7 -3.7 3.876 4.631
8 -3.6 13.055 13.307
9 -3.5 5.620 6.315
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Methoxy_methyl_tetrahydro_dibenzo_quinolin_ol_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1126105392
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.6 0.000 0.000
2 -6.5 1.932 2.943
3 -6.2 1.618 4.502
4 -6.2 2.430 4.469
5 -6.0 1.829 4.665
6 -5.8 2.286 4.554
7 -5.6 5.227 7.389
8 -5.6 3.897 5.793
9 -5.4 4.486 6.689
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Methylmalonic_acid_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1620668944
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.2 0.000 0.000
2 -4.2 1.442 3.129
3 -4.1 1.066 3.379
4 -4.0 1.712 2.356
5 -4.0 4.564 5.350
6 -3.9 1.977 2.684
7 -3.9 4.689 5.976
8 -3.9 1.506 2.759
9 -3.8 1.904 2.436
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


methyl_trihydroxy_hydroxymethyl_oxolanyl_methyl_amino_butanoic_acid_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 1591105764
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.0 0.000 0.000
2 -5.4 1.314 1.422
3 -5.2 9.647 11.006
4 -5.1 2.153 6.000
5 -5.1 1.424 2.175
6 -4.9 1.877 2.970
7 -4.9 1.873 5.703
8 -4.8 1.936 6.132
9 -4.8 2.575 5.809
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Methyl_trihydroxy_hydroxymethyl_tetrahydro_furanylmethylaminobutanoic
acid_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1333780324
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.1 0.000 0.000
2 -5.9 1.505 2.512
3 -5.4 1.486 2.137
4 -5.3 1.943 5.890
5 -5.1 1.490 2.298
6 -4.9 2.374 5.970
7 -4.7 2.517 6.596
8 -4.7 10.137 11.826
9 -4.7 7.819 10.531
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Methyl_trihydroxy_hydroxymethyl_tetrahydro_furanyl_methyl_amino_pentanoic_acid_out.
pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -562748636
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.8 0.000 0.000
2 -5.5 2.272 6.082
3 -5.4 2.105 6.445
4 -5.1 1.731 2.528
5 -5.0 2.100 5.854
6 -5.0 1.860 3.510
7 -4.9 2.594 5.698
8 -4.9 2.037 3.656
9 -4.9 3.193 5.708
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################
Output will be D:\multiple_ligands_GAA3\\ligd\min_Andrographolide_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -886021668
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.4 0.000 0.000
2 -6.3 6.874 10.352
3 -6.1 2.848 4.619
4 -6.1 3.282 7.508
5 -6.0 1.238 2.103
6 -6.0 1.486 2.128
7 -5.6 2.804 4.491
8 -5.6 3.141 7.557
9 -5.4 3.407 7.559
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\neuraminic_acid_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 265316888
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.0 0.000 0.000
2 -5.6 1.428 2.334
3 -5.3 1.816 5.340
4 -5.2 2.160 5.515
5 -4.9 1.820 2.461
6 -4.9 2.088 4.095
7 -4.9 2.346 4.029
8 -4.7 2.188 3.014
9 -4.6 2.199 3.188
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Norethindrone_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -936849920
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -7.4 0.000 0.000
2 -6.7 4.189 6.221
3 -6.4 4.309 6.210
4 -6.3 3.132 6.546
5 -6.2 5.076 7.754
6 -6.2 7.128 10.077
7 -6.2 1.441 3.096
8 -6.1 1.757 3.480
9 -6.0 1.658 6.813
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


N_Butyl_ethoxyphenyl_sulfamoyl_oxo_dihydro_quinolinecarboxamide_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 2069061620
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -7.2 0.000 0.000
2 -7.0 2.909 4.972
3 -6.9 3.423 5.816
4 -6.9 1.778 2.496
5 -6.8 5.551 7.922
6 -6.8 2.188 8.157
7 -6.7 4.405 6.224
8 -6.7 3.763 6.736
9 -6.6 4.941 9.226
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\N_Glycosyl_L_asparagine_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -394315512
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.4 0.000 0.000
2 -6.1 1.342 1.435
3 -5.9 1.700 1.936
4 -5.5 1.947 3.398
5 -5.4 2.041 3.080
6 -5.2 2.215 6.518
7 -4.7 3.130 5.019
8 -4.6 2.624 4.740
9 -4.6 7.409 8.350
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Oleoyl_lysophosphatidic_acid_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -484356288
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.7 0.000 0.000
2 -5.6 4.943 7.816
3 -5.6 2.133 3.751
4 -5.5 2.613 4.644
5 -5.4 1.217 2.094
6 -5.4 1.564 2.330
7 -5.3 1.765 3.801
8 -5.3 5.119 9.051
9 -5.3 2.317 5.060
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Oxaprozin_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -708782656
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.7 0.000 0.000
2 -6.7 2.237 3.106
3 -6.4 2.208 3.500
4 -6.4 1.744 2.092
5 -6.3 3.257 5.816
6 -6.3 3.843 6.924
7 -6.2 9.170 11.214
8 -6.1 5.196 7.279
9 -6.0 5.015 6.454
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Oxoprosta_tetraenoic_acid_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 1896910592
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.
mode | affinity | dist from best mode
| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.6 0.000 0.000
2 -6.2 2.038 3.145
3 -5.9 2.259 3.704
4 -5.9 3.113 5.234
5 -5.9 2.514 6.647
6 -5.9 2.341 3.997
7 -5.9 2.156 3.881
8 -5.7 2.326 3.851
9 -5.7 2.754 5.148
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\o_Succinylbenzoate_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 622664752
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.3 0.000 0.000
2 -6.1 1.939 2.662
3 -6.1 2.079 5.554
4 -6.0 3.379 5.300
5 -5.9 2.593 3.936
6 -5.7 2.668 5.649
7 -5.5 3.970 6.713
8 -5.4 3.099 6.077
9 -5.3 4.095 5.462
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\O_ureido_D_serine_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -406495172
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.2 0.000 0.000
2 -4.9 1.856 2.433
3 -4.8 2.613 5.247
4 -4.7 3.957 5.541
5 -4.6 3.728 4.758
6 -4.6 2.500 3.386
7 -4.5 12.047 13.067
8 -4.4 3.725 6.397
9 -4.4 5.065 6.575
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Palmitoyl_lysophosphatidic_acid_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 128451584
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -4.9 0.000 0.000
2 -4.8 3.400 6.571
3 -4.8 4.504 9.040
4 -4.7 8.459 10.758
5 -4.6 4.032 8.818
6 -4.6 7.465 10.241
7 -4.5 4.835 7.791
8 -4.5 3.363 6.026
9 -4.5 4.677 9.191
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Peniciside_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 1501312816
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -7.9 0.000 0.000
2 -7.7 1.148 1.520
3 -7.2 8.264 11.399
4 -6.9 6.839 12.273
5 -6.8 11.847 16.685
6 -6.8 5.516 7.468
7 -6.4 6.143 9.443
8 -6.4 6.461 14.073
9 -6.4 4.804 11.367
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\phellopterin_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -80195200
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.6 0.000 0.000
2 -6.3 1.924 6.011
3 -6.2 2.497 5.438
4 -6.2 2.232 3.310
5 -6.1 2.275 3.950
6 -6.1 2.470 3.791
7 -6.0 1.855 5.491
8 -6.0 1.554 6.634
9 -5.9 2.209 3.630
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Pheophorbide_A_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -479800640
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -7.4 0.000 0.000
2 -7.4 4.158 9.127
3 -6.8 4.532 7.978
4 -6.7 2.283 6.508
5 -6.4 4.523 10.190
6 -6.4 5.476 10.204
7 -6.3 3.930 8.505
8 -6.2 2.729 4.108
9 -6.1 3.060 5.381
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Phytosphingosine_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 2082588980
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.1 0.000 0.000
2 -4.7 1.827 2.895
3 -4.5 1.505 2.342
4 -4.4 2.050 2.755
5 -4.4 1.741 2.202
6 -4.4 2.486 4.483
7 -4.4 6.009 9.322
8 -4.4 4.279 7.435
9 -4.3 2.063 3.126
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\phytyl_dihydroxynaphthalene_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 2049311456
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.1 0.000 0.000
2 -6.0 4.950 8.865
3 -5.9 4.668 8.603
4 -5.9 2.381 5.990
5 -5.9 2.293 7.474
6 -5.8 3.100 6.892
7 -5.7 2.709 6.872
8 -5.7 2.473 7.612
9 -5.7 2.604 6.814
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\pos_castanospermine_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1876691648
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.4 0.000 0.000
2 -5.4 1.644 4.032
3 -5.2 0.945 3.774
4 -5.0 1.663 2.876
5 -4.8 1.852 4.124
6 -4.6 8.847 9.208
7 -4.5 2.004 4.825
8 -4.4 3.178 4.266
9 -4.4 3.144 4.555
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


pos_catechin_O_beta_D_xyloside_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 1930954400
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -7.1 0.000 0.000
2 -7.0 2.412 3.324
3 -6.9 3.555 8.652
4 -6.9 5.965 10.302
5 -6.9 1.798 4.488
6 -6.9 2.241 8.578
7 -6.6 6.413 10.314
8 -6.5 2.116 8.212
9 -6.4 2.703 8.239
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\pos_neg_Methoprene_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1056226304
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.6 0.000 0.000
2 -5.5 3.041 8.067
3 -5.3 2.762 9.318
4 -5.2 3.539 8.130
5 -5.2 2.029 9.086
6 -5.0 2.780 9.847
7 -4.9 2.131 3.914
8 -4.9 2.154 2.944
9 -4.9 6.325 9.446
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\pos_Nootkatone_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 2090207168
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.4 0.000 0.000
2 -5.8 2.710 6.143
3 -5.8 1.939 3.230
4 -5.6 2.317 5.584
5 -5.5 3.034 5.956
6 -5.3 3.615 5.449
7 -5.2 1.982 3.642
8 -5.1 4.309 5.977
9 -4.9 9.326 10.602
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Salicylic_acid_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -81784224
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.3 0.000 0.000
2 -5.0 1.060 2.183
3 -4.9 1.824 2.318
4 -4.8 4.132 5.194
5 -4.8 1.676 3.369
6 -4.7 1.919 3.115
7 -4.7 2.443 3.422
8 -4.3 12.318 12.603
9 -4.3 3.917 5.234
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\scoparone_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -234424080
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.0 0.000 0.000
2 -5.3 1.016 2.701
3 -5.1 2.582 5.330
4 -5.1 1.668 4.807
5 -5.0 2.118 2.999
6 -4.8 3.537 4.486
7 -4.8 2.308 4.729
8 -4.6 3.684 5.189
9 -4.6 1.929 4.728
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\sinapinic_acid_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -440504772
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -5.2 0.000 0.000
2 -5.1 0.197 3.249
3 -4.7 1.939 3.756
4 -4.7 2.372 5.745
5 -4.7 3.326 5.663
6 -4.7 2.908 4.568
7 -4.7 2.054 6.237
8 -4.7 2.916 4.078
9 -4.6 2.445 5.535
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\steviol_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1568822972
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.0 0.000 0.000
2 -5.8 2.440 4.312
3 -5.7 2.052 6.012
4 -5.5 8.604 10.524
5 -5.3 9.555 11.290
6 -5.3 8.611 11.035
7 -5.3 7.696 10.205
8 -5.3 2.294 3.938
9 -5.3 11.194 13.335
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\Swertianolin_out.pdbqt


Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -175522644
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.7 0.000 0.000
2 -6.4 5.539 8.501
3 -6.4 2.454 4.507
4 -6.2 2.969 4.140
5 -6.2 4.474 8.470
6 -6.0 2.698 6.129
7 -6.0 3.955 6.886
8 -6.0 7.670 9.862
9 -5.9 4.353 8.093
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################
Output will be D:\multiple_ligands_GAA3\\ligd\S_min_tetrahydropalmatine_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: 39759600
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.4 0.000 0.000
2 -6.2 1.637 3.393
3 -6.1 4.739 7.561
4 -5.9 5.829 9.063
5 -5.8 9.073 10.576
6 -5.7 4.947 6.801
7 -5.5 1.772 3.670
8 -5.5 8.689 12.285
9 -5.2 2.968 5.379
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


Trihydroxy_dioxo_epoxypicras_enyl_acetoxy_methylbutanoate_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -1752886016
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.5 0.000 0.000
2 -6.3 6.197 9.984
3 -6.0 3.391 5.567
4 -5.8 7.783 11.305
5 -5.7 2.435 5.819
6 -5.7 5.190 7.786
7 -5.6 9.773 13.554
8 -5.6 6.494 10.418
9 -5.5 10.471 15.300
Writing output ... done.
#################################################################
# If you used AutoDock Vina in your work, please cite: #
# #
# O. Trott, A. J. Olson, #
# AutoDock Vina: improving the speed and accuracy of docking #
# with a new scoring function, efficient optimization and #
# multithreading, Journal of Computational Chemistry 31 (2010) #
# 455-461 #
# #
# DOI 10.1002/jcc.21334 #
# #
# Please see http://vina.scripps.edu for more information. #
#################################################################

Output will be D:\multiple_ligands_GAA3\\ligd\


trisacetyloxy_hydroxy_pentamethyl_out.pdbqt
Detected 8 CPUs
Reading input ... done.
Setting up the scoring function ... done.
Analyzing the binding site ... done.
Using random seed: -587255004
Performing search ...
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
done.
Refining results ... done.

mode | affinity | dist from best mode


| (kcal/mol) | rmsd l.b.| rmsd u.b.
-----+------------+----------+----------
1 -6.3 0.000 0.000
2 -6.2 1.917 2.726
3 -6.0 3.958 9.933
4 -6.0 3.749 6.704
5 -6.0 2.526 8.448
6 -5.7 2.942 7.464
7 -5.7 2.386 5.917
8 -5.6 4.158 10.112
9 -5.4 2.812 7.351
Writing output ... done.
Press any key to continue . . .

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