Professional Documents
Culture Documents
DOI 10.1007/s00253-010-2825-7
Received: 10 July 2010 / Revised: 2 August 2010 / Accepted: 3 August 2010 / Published online: 14 August 2010
# Springer-Verlag 2010
Abstract Sucrose is one of the most promising carbon uptake systems in E. coli K-12. To prove that this system can
sources for industrial fermentation. To achieve sucrose also be applied for the production of useful metabolites, the
catabolism, the sucrose utilization operons have been M. succiniciproducens β-fructofuranosidase was introduced
introduced into microorganisms that are not able to utilize into the engineered L-threonine production strain of E. coli
sucrose. However, the rates of growth and sucrose uptake K-12. This recombinant strain was able to produce 51.1 g/L
of these engineered strains were relatively low to be L-threonine by fed-batch culture, resulting in an overall yield
successfully employed for industrial applications. Here, of 0.284 g L-threonine per g sucrose. This simple approach to
we report a practical example of developing sucrose- make E. coli K-12 to acquire sucrose-utilizing ability and its
utilizing microorganisms using Escherichia coli K-12 as a successful biotechnological application can be employed to
model system. The sucrose utilizing ability was acquired by develop sustainable bioprocesses using renewable biomass.
introducing only β-fructofuranosidase from three different
sucrose-utilizing organisms (Mannheimia succiniciproducens, Keywords Sucrose . β-Fructofuranosidase .
E. coli W, and Bacillus subtilis). Among them, the M. Sucrose 6-phosphate hydrolase . Sucrase . L-threonine
succiniciproducens β-fructofuranosidase was found to be the
most effective for sucrose utilization. Analyses of the
underlying mechanism revealed that sucrose was hydrolyzed Introduction
into glucose and fructose in the extracellular space and both
liberated hexoses could be transported by their respective Sucrose appeared as an attractive raw material for cost
effective bio-based chemical production (Koutinas et al.
2004; Reid and Abratt 2005; Renouf et al. 2008). Sucrose is
J. W. Lee : S. Choi : J. H. Park (*) : S. Y. Lee (*)
the most abundant disaccharide on earth mostly extracted
Metabolic and Biomolecular Engineering National Research
Laboratory, Department of Chemical and Biomolecular from sugarcane and sugarbeet (Reid and Abratt 2005).
Engineering (BK21 Program), BioProcess Engineering Research Sucrose is one of the least expensive carbon sources that
Center, Center for Systems and Synthetic Biotechnology, can be used as a feedstock (Koutinas et al. 2004). A recent
and Institute for the BioCentury, KAIST,
life cycle evaluation of sugarcane, sugarbeet, and corn also
Daejeon 305-701, Republic of Korea
e-mail: jinhwan@kaist.ac.kr suggested that sugarcane is advantageous with respect to
e-mail: leesy@kaist.ac.kr energy input, green house gas emission, and acidification
potential due to its high monosaccharide yield and the
S. Y. Lee
additional energy from cane fiber being combustible
Department of Bio and Brain Engineering and Bioinformatics
Research Center, Department of Biological Sciences, KAIST, (Renouf et al. 2008).
Daejeon 305-701, Republic of Korea In addition, sucrose has also a beneficial effect on
protection of cells from oxidative, heat, and acids stresses,
C. E. Vickers : L. K. Nielsen
so it can be an appropriate carbon source to enhance bio-
Australian Institute for Bioengineering and Nanotechnology
(AIBN), The University of Queensland, product formation. Its positive influence on preservation of
St. Lucia, QLD 4072, Australia a protein structure from several kinds of stresses including
906 Appl Microbiol Biotechnol (2010) 88:905–913
high temperature, high pressure, and dehydration has been CscA from E. coli W and SacA from Bacillus subtilis were
documented by many researchers (Kilimann et al. 2006; also examined for their ability to confer the sucrose-
Molina-Hoppner et al. 2004; Prestrelski et al. 1993; Van utilizing ability. Furthermore, we examined whether this
Opstal et al. 2003). Sucrose has also been used as a sucrose-utilizing ability can be successfully transferred to a
cryoprotectant and a lyoprotectant for the safe and long- metabolically engineered E. coli K-12 strain producing a
term preservation of various types of biologically active useful bioproduct; in this study, an L-threonine-producing
substances ranging from human tissues to pharmaceutical E. coli K-12 strain was examined as a model system. The
proteins (Hovatta et al. 1996; Roy and Gupta 2004). results suggest that the strategy reported here can be widely
However, many of Escherichia coli strains cannot applicable for developing sucrose-utilizing industrial strains
metabolize sucrose, and less than 50% of the wild-type that do not have innate sucrose-utilizing ability.
strains can utilize sucrose as a sole carbon source including
E. coli W, EC3132, and O157:H7 (Jahreis et al. 2002).
Many of well-characterized and widely used E. coli strains Materials and methods
including E. coli K-12, B, and C, unfortunately cannot
catabolize sucrose as a sole carbon source. In particular, Bacterial strains, plasmids, and genetic manipulation
E. coli K-12, the first E. coli strain to have its genome
sequenced, has been used for several decades as a model The strains, plasmids, and primers used in this study are
bacterium as well as an industrial workhorse due to its listed in Table 1. All DNA manipulations were carried out
relatively short doubling time and easiness in genetic by following standard protocols (Sambrook 2001). E. coli
modification. As there are countless examples of using Top10 (Invitrogen, Carlsbad, CA) was used as a cloning
E. coli K-12 for the production of chemicals, biofuel, host for recombinant DNA manipulations. E. coli K-12
biodegradable polymers, amino acids, secondary metabo- W3110 was used as a production host and was cultivated at
lites, etc., development of sucrose-utilizing E. coli K-12 is 37°C in either LB medium or M9 minimal medium
desirable for biotechnological applications. containing sucrose as a sole carbon source.
These considerations have led many researchers to Genomic DNAs from M. succiniciproducens, E. coli,
attempt to develop an E. coli K-12 derivative possessing and B. subtilis were prepared using the genomic DNA
sucrose–metabolizing capability. Most studies have focused extraction kit (Intron Biotechnology, Inc., Seongnam,
on the transfer of the sucrose operon by using either high- Korea). To construct the pTac15KsacCMS plasmid, the
or low-copy-number plasmids (Sahin-Toth et al. 1999; sacC gene was amplified by PCR with primers P1 and P2
Schmid et al. 1982, 1988; Tsunekawa et al. 1992; (Table 1) using M. succiniciproducens genomic DNA as a
Wohlhieter et al. 1975) and the use of different gene template. The EcoRI-SacI-digested PCR fragment was
sources (Garcia 1985; Scholle et al. 1987, 1990; Sprenger cloned into the EcoRI-SacI-digested pTac15K to make
and Lengeler 1988). Some improvements have been made, pTac15KsacCMS. The same procedure was applied to
for example increasing the stability of the plasmid contain- construct plasmids pTac15KcscAEW and pTac15KsacABS
ing sucrose operon by using low-copy-plasmid (Tsunekawa with the primers P3–P4 and P5–P6 using the genomic DNA
et al. 1992), but these strains still suffer from low uptake of E. coli W (KCTC 1039; Korean Collection for Type
rate of sucrose and low growth rate. Cultures, Daejeon, Korea) and B. subtilis 168 (KCTC 1028)
Recently, we observed that the overexpression of SacC as templates, respectively. Successful cloning of these three
enzyme in Mannheimia succiniciproducens resulted in the genes was confirmed by sequencing (Solgent, Daejeon,
hydrolysis of sucrose in extracellular space. From this Korea). Three plasmids constructed were then introduced
observation, we hypothesized that SacC enzyme from M. individually into E. coli K-12W3110. When required,
succiniciproducens known as sucrose 6-phosphate hydro- ampicillin and kanamycin were added at the final concen-
lase can also be used as sucrase in extracellular spaces. If trations of 50 and 25 μg/mL, respectively. Unless otherwise
this enzyme exhibits sucrase activity in the extracellular stated, all chemicals used in this study were of reagent
space, it will be possible to confer the sucrose-utilizing grade and purchased from either Sigma–Aldrich (St. Louis,
capability to other microorganisms which do not have the MO) or Junsei Chemical (Tokyo, Japan).
ability. Thus, we examined in this study whether a sucrose-
utilizing capability can be transferred by simply introducing Fermentation and metabolite measurement
the M. succiniciproducens SacC enzyme to E. coli K-12.
The mechanism was also examined by measuring sucrose Overnight preculture of E. coli was carried out in 10 mL
hydrolysis activity in the culture medium. As SacC enzyme LB. A 5% (v/v) inoculum was transferred to a 25-mL flask
from M. succiniciproducens is categorized as a β- containing 100 mL M9 medium (per liter: 33.9 g Na2HPO4,
fructofuranosidase, the other β-fructofuranosidases including 15 g KH2PO4, 2.5 g NaCl, 5 g NH4Cl, and 0.36 g MgSO4)
Appl Microbiol Biotechnol (2010) 88:905–913 907
supplemented with 10 g/L sucrose (separately sterilized). Fed-batch cultivation for L-threonine production
Cultures were incubated at 37°C and 200 rpm.
Batch fermentation under the anaerobic condition was The L-threonine producing strain developed by introducing
carried out in a 6.6-liter Bioflo 3000 reactor (New pBRThrABCR3 and pTac15KsacCMS plasmids into TH28C
Brunswick Scientific Co., Edison, NJ) with working strain (Table 1) was grown in a semi-defined THM medium
volumes of 2.5 L. An R/2 medium plus 20 g/L sucrose at 31°C with a starting pH of 6.0. The THM1 medium
was used. The R/2 medium contains per liter: KH2PO4, contains per liter: sucrose, 20 g; (NH4)2SO4, 15 g; KH2PO4,
6.75 g; (NH 4) 2 HPO 4, 2.0 g; C 6 H 8O 7 ·H 2 O, 0.85 g; 2.0 g; MgSO4.7H2O, 2.0 g; yeast extract, 3 g; trace metal
MgSO4·7H2O, 0.7 g; trace metal solution, 5 mL. The trace solution, 5 mL. The medium was supplemented with 2 mM
metal solution contains per liter: FeSO4.7H2O, 10 g; CaCl2, L-lysine, L-methionine, and 0.8 mM L-isoleucine to over-
1.35 g; ZnSO4.7H2O, 2.25 g; MnSO4.4H2O, 0.5 g; come the auxotrophy of the production strain. Seed culture
CuSO 4 . 5H 2 O, 1 g; (NH 4 ) 6 Mo 7 O 24 . 4H 2 O, 0.106 g; was prepared in 250-mL Erlenmeyer flask containing
Na2B4O7.10H2O, 0.23 g; 35% HCl, 10 mL. The fermenta- 100 mL of LB medium at 200 rpm at 31°C. Cells
tion in the Bioflo 3000 reactor was initiated by seeding 4% at stationary phase were diluted to an initial optical density
(v/v) inoculum from overnight preculture in 100 mL LB of 0.2–0.3 into a 6.6-L bioreactor (Bioflo 3000, New
medium. The temperature was controlled at 37°C, 200 rpm, Brunswick Scientific Co., Edison, NJ) containing 2 L of
and the pH was kept at 6.8 by the automatic addition of a THM medium and cultivated aerobically by batch fermen-
28% (v/v) ammonia solution. The fermentor was continu- tation at 31°C. Feeding solution for fed-batch cultivation
ously sparged with industrial-grade CO2 gas at a flow rate was made of 400 g/L sucrose, 20 g/L KH2PO4, 2.1 g/L
of 0.2 vvm (CO2 volume/working volume/minute). The L-methionine and 2.1 g/L L-lysine. When the sucrose
quantification of sucrose, and fermentative products including concentration in the culture broth fell to 1 g/L, 100 mL of
acetic, formic, lactic, and succinic acids, and ethanol were feeding solution (thus, equivalent to 40 g sucrose, 2 g
performed by a high-performance liquid chromatography KH2PO4, 0.42 g L-methionine, and 0.42 g L-lysine) was
(HPLC) as described previously (Lee et al. 2006b). The added. L-isoleucine feeding is not necessary as cells are
OD600 was measured using an Ultrospec 3100 Pro spectro- only attenuated for its biosynthesis (Lee et al. 2007). The
photometer (Amersham biosciences, Uppsala, Sweden) to pH was controlled at 6.0 by automatic feeding of 28% (v/v)
monitor the cell growth. The concentration of L - ammonia solution. Dissolved oxygen concentration was
threonine was analyzed by an amino acid analyzer (Sykam maintained above 40% of air saturation by supplying air at
S433; Sykam, Eresing, Germany) as described previously 1 vvm and by automatically controlling the agitation speed
(Park et al. 2007). up to 1,000 rpm.
908 Appl Microbiol Biotechnol (2010) 88:905–913
To measure the extracellular sucrose hydrolysis activity of Transfer of the sucrose-utilizing ability into E. coli K-12
the engineered E. coli K-12 strain, samples were taken from strain by introducing SacC enzyme
the mid-exponential growth phase of the culture. Cells were
completely removed by centrifugation for 5 min at 4°C and To see if the sucrose-utilizing ability can be transferred to a
16,100×g, and the supernatant was filtered through 0.2-μm strain which is unable to utilize sucrose, the M. succinicipro-
pore-size filter (DISMIC-13HP, Toyo Roshi Kaisha Ltd., ducens SacC was introduced into the E. coli K-12 W3110
Japan). If the enzyme is present in the culture medium, it strain. As shown in Fig. 1a, the control strain E. coli
can be heat denatured. Thus, the cell-free culture medium K-12 W3110 (pTac15K) could not grow in the minimal
was either non-denatured or denatured at 100°C for 10 min medium containing sucrose as a sole carbon source.
to observe sucrose hydrolysis. The denatured and non- Although a little growth in the first 5 h resulting from
denatured culture medium was incubated at 37°C for 2, 4, residual nutrients in the LB medium inoculum was observed,
and 6 h to measure the sucrose hydrolysis activity. sucrose was not consumed at all (Fig. 1a). In contrast to the
Reactions were stopped by denaturing again as described control strain, E. coli K-12 W3110 (pTac15KsacCMS) over-
above. The concentrations of sucrose and the resultant expressing the M. succiniciproducens sacC gene could
hexoses, glucose and fructose, were quantified by HPLC as utilize sucrose and grew up to the OD600 of 4.0 (Fig. 1b).
described above. The sucrose hydrolysis activity was calcu- Interestingly, it was found that glucose and fructose were
lated as the difference in the remaining sucrose in the culture detected in the culture medium from the beginning of the
medium before and after incubation. Total cellular proteins cultivation. Concentrations of glucose and fructose in-
were quantified by Bradford assay (Bradford 1976). One unit creased gradually until sucrose was completely depleted.
(U) of enzyme activity was defined as the amount of enzyme After the complete exhaustion of sucrose, the concen-
necessary to catalyze the hydrolysis of 1 μmol of sucrose per trations of both hexoses started to decrease; glucose
minute. concentration decreased more rapidly because it is a more
Fig. 1 Fermentation profiles of E. coli strains in the medium metabolite profiles obtained by anaerobic batch fermentation of
containing sucrose as a sole carbon source. Growth and metabolite E. coli K-12 W3110 (pTac15KsacCMS). Fermentation profiles are
profiles obtained by flask culture of E. coli K-12 W3110 (pTac15K) represented with the following symbols except for (c) (the symbols are
(a) and E. coli K-12 W3110 (pTac15KsacCMS) (b) aerobically in M9 as defined above): cell growth (white circle), sucrose (white square),
medium containing 10 g/L sucrose. c Growth comparison among E. glucose (filled diamond), fructose (filled inverted triangle), acetic acid
coli strains including E. coli K-12 W3110 (pTac15K) (white square), (white diamond), formic acid (filled square), lactic acid (white
E. coli K-12 W3110 (pTac15KcscAEW) (filled circle), and E. coli inverted triangle), succinic acid (filled circle), and ethanol (filled
K-12 W3110 (pTac15KsacABS) (filled diamond). d Growth and triangle)
Appl Microbiol Biotechnol (2010) 88:905–913 909
preferred carbon source than fructose. Throughout the cell was denatured in 100°C for 10 min. The activities exhibited
growth, acetate was produced as the only fermentation end declining tendency along with the incubation time but it
product (Fig. 1b). lasted up to 6 h at least. Consequently, the hydrolysis of
sucrose indeed occurs in the extracellular space and liberated
Sucrose hydrolysis in culture medium and the activity glucose and fructose seem to be transported by their
of SacC respective uptake systems, mainly PTS systems (Fig. 3a).
Fig. 3 Schematic representation of the sucrose utilization system study, sucrose PTS system, and sucrose permease system would most
developed and employed in this study (a), sucrose PTS system (b), likely consume 1, 1.5, and 2 mol of ATP, respectively, to produce
and sucrose permease system (c). Solid and dotted lines indicate 1 mol of FBP. SCR sucrose; GLC glucose; FRU fructose; PEP
metabolic pathway and phosphoryl group transfer, respectively. phosphoenolpyruvate; PTS PEP-dependent phosphotransferase sys-
Because these three systems have different phosphate donors for the tem; G6P glucose 6-phosphate; F1P fructose 1-phosphate; FBP
sucrose utilization, the consumption of ATP during sucrose uptake fructose 1,6-bisphosphate; PYR pyruvic acid; PMS permease
varies from one another. Sucrose utilization system described in this
acetic, 3.74 g/L formic, 4.19 g/L lactic, 5.10 g/L succinic obtained in 70 h were 51.1 g/L from 180 g/L sucrose and
acid, and 2.66 g/L ethanol (Table 2 and Fig. 1d). Similar to 0.73 g/L/h, respectively (Fig. 4). Sucrose was gradually
the aerobic cultivation (Fig. 1b), glucose and fructose were hydrolyzed to glucose and fructose by extracellular sucrase
released into the medium during the growth under activity of β-fructofuranosidase during the batch phase. The
anaerobic condition (Fig. 1d). concentrations of glucose and fructose increased accordingly
until 4–7 h, after which they decreased due to the uptake by
Biotechnological application of the transferable sucrose the cells; this again supports our hypothesis that sucrose is
utilization system: application to L-threonine production hydrolyzed to glucose and fructose in the extracellular space
and transported by their respective uptake systems. During
To examine whether the β-fructofuranosidase alone is truly the fed-batch phase, the concentration of sucrose was
applicable to an industrially relevant bioprocess, the fed-batch maintained at almost zero, while the concentrations of glucose
cultivation of an L-threonine producing E. coli K-12 strain and fructose were maintained between 0 and 10 g/L,
harboring the plasmid overexpressing SacC enzyme was suggesting that sucrose was hydrolyzed to glucose and
carried out using sucrose as a carbon source. The L-threonine fructose immediately after being fed into the culture medium
producing strain used was TH28C (pBRThrABCR3) strain by highly active extracellular β-fructofuranosidase. Acetic
(Lee et al. 2007), which was transformed with the plasmid acid concentration was maintained at a level lower than
pTac15KsacCMS. By fed-batch culture of the TH28C 1.0 g/L until 47.8 h, after which cells started to accumulate
(pBRThrABCR3 and pTac15KsacCMS) strain, the final acetic acid up to a final concentration of 4.47 g/L. This
L-threonine concentration and volumetric productivity tendency of less acetic acid formation was the same as that
Qian ZG, Xia XX, Lee SY (2009) Metabolic engineering of Scholle RR, Steffen HE, Goodman HJ, Woods DR (1990) Expression
Escherichia coli for the production of putrescine: a four carbon and regulation of a Bacteroides fragilis sucrose utilization
diamine. Biotechnol Bioeng 104:651–662 system cloned in Escherichia coli. Appl Environ Microbiol
Reid SJ, Abratt VR (2005) Sucrose utilisation in bacteria: genetic 56:1944–1948
organisation and regulation. Appl Microbiol Biotechnol 67: Sprenger GA, Lengeler JW (1988) Analysis of sucrose catabolism in
312–321 Klebsiella pneumoniae and in Scr+derivatives of Escherichia
Renouf MA, Wegener MK, Nielsen LK (2008) An environmental life coli K12. J Gen Microbiol 134:1635–1644
cycle assessment comparing Australian sugarcane with US corn Tsunekawa H, Azuma S, Okabe M, Okamoto R, Aiba S (1992)
and UK sugar beet as producers of sugars for fermentation. Acquisition of a sucrose utilization system in Escherichia coli K-
Biomass Bioenergy 32:1144–1155 12 derivatives and its application to industry. Appl Environ
Roy I, Gupta MN (2004) Freeze-drying of proteins: some emerging Microbiol 58:2081–2088
concerns. Biotechnol Appl Biochem 39:165–177 Van Opstal I, Vanmuysen SC, Michiels CW (2003) High sucrose
Sahin-Toth M, Lengyel Z, Tsunekawa H (1999) Cloning, sequencing, concentration protects E. coli against high pressure inactivation
and expression of cscA invertase from Escherichia coli B-62. but not against high pressure sensitization to the lactoperoxidase
Can J Microbiol 45:418–422 system. Int J Food Microbiol 88:1–9
Sambrook JRD (2001) Molecular cloning: a laboratory manual. Cold Vizcaino C, Restrepo-Montoya D, Rodriguez D, Nino LF, Ocampo M,
Spring Harbor Lab Press, Cold Spring Harbor Vanegas M, Reguero MT, Martinez NL, Patarroyo ME, Patarroyo
Schmid K, Schupfner M, Schmitt R (1982) Plasmid-mediated uptake MA (2010) Computational prediction and experimental assess-
and metabolism of sucrose by Escherichia coli K-12. J Bacteriol ment of secreted/surface proteins from mycobacterium tubercu-
151:68–76 losis H37Rv. PLoS Comput Biol 6:e1000824
Schmid K, Ebner R, Altenbuchner J, Schmitt R, Lengeler JW (1988) Wohlhieter JA, Lazere JR, Snellings NJ, Johnson EM, Synenki RM,
Plasmid-mediated sucrose metabolism in Escherichia coli K12: Baron LS (1975) Characterization of transmissible genetic
mapping of the scr genes of pUR400. Mol Microbiol 2:1–8 elements from sucrose-fermenting Salmonella strains. J Bacteriol
Scholle RR, Coyne VE, Maharaj R, Robb FT, Woods DR (1987) 122:401–406
Expression and regulation of a Vibrio alginolyticus sucrose Xia XX, Han MJ, Lee SY, Yoo JS (2008) Comparison of the
utilization system cloned in Escherichia coli. J Bacteriol extracellular proteomes of Escherichia coli B and K-12 strains
169:2685–2690 during high cell density cultivation. Proteomics 8:2089–2103