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9.Rankin, S. and R.R. Isberg. 1994.

Identifica- Protein Aggregation


tion of Legionella pneumophila promopoters
regulated by the macrophage intracellular en- Mediated by Cysteine
vironment. Infect. Agents Dis. 2:269-271.
10.Rest, R.F. 1995. Association of bacteria with Oxidation During the
human phagocytes. Methods Enzymol.
253:12-26.
Stacking Phase of
11.Takeuchi, A. 1967. Electron microscope stud-
ies of experimental Salmonella infection. I.
Discontinuous Buffer
Penetration into the intestinal epithelium by SDS-PAGE
Salmonella typhimurium. Am. J. Pathol.
50:109-136.
12.Valdivia, R.H. and S. Falkow. 1996. Bacteri- BioTechniques 30:311-316 (February 2001)
al genetics by flow cytometry: rapid isolation
of Salmonella typhimurium acid-inducible
promoters by differential fluorescence induc-
tion. Mol. Microbiol. 22:367-378.
13.Valdivia, R.H. and S. Falkow. 1997. Fluores- ABSTRACT
cence-based isolation of bacterial genes ex-
pressed within host cells. Science 277:2007-
The resolution of complex protein mix-
2011.
14.Valdivia, R.H., A.E. Hromockyj, D. tures by discontinuous buffer SDS-PAGE is
Monack, L. Ramakrishnan, and S. Falkow. accomplished by their concentration into
1996. Applications for green fluorescent pro- thin bands in the stacking gel, followed by
tein (GFP) in the study of host-pathogen inter- their separation during migration through
actions. Gene 173:47-52.
15.Weingart, C.L., G. Broitman-Maduro, G. the resolving gel. Recombinant human in-
Dean, S. Newman, M. Peppler, and A.A. terferon-inducible protein-10 (IP-10), a 10-
Weiss. 1999. Fluorescent labels influence kDa C-X-C chemokine with four cysteines,
phagocytosis of Bordetella pertussis by hu- aggregated during the stacking phase of
man neutrophils. Infect. Immun. 67:4264-
4267. SDS-PAGE and generated a band with an
apparent molecular mass of 18 kDa. This
aggregation depended on the presence of
We thank Anthea Lee and Stanley reduced sulfhydryl residues on IP-10, on the
Falkow for the plasmids expressing GFP, amount of loaded protein, and on the con-
Anne Nye for help with the fluorescence mi-
centration of the ammonium persulfate used
croscopy, and Gary Durack for help with to polymerize the stacking gel. The aggrega-
the flow cytometry. This work was support- tion of IP-10 could be prevented by reduc-
ed by National Institutes of Health grant no.
tion of its sulfhydryls with dithiothreitol fol-
PHS GM34715 and a grant from the Illinois lowed by irreversible blockade with
Council for Food and Agriculture Research. iodoacetamide. These methods may be use-
Address correspondence to Dr. Robert A.
ful in the prevention of aggregation of
Edwards, Department of Molecular Sci- sulfhydryl-containing proteins during SDS-
ences, University of Tennessee, Memphis,
PAGE, especially when large quantities are
Memphis, TN 38163, USA. e-mail: red- analyzed to assess their purity.
wards@utmem.edu

Received 22 February 2000; accepted INTRODUCTION


21 September 2000.
The pioneering work of Laemmli
Robert A. Edwards and (11) has made discontinuous buffer
SDS-PAGE indispensable for protein
Stanley R. Maloy
analysis. The superior resolution of dis-
University of Illinois at continuous buffer SDS-PAGE depends
Urbana-Champaign on the concentration of proteins in
Urbana, IL, USA sharp bands away from the bulk of the
SDS in the stacking gel, followed by
their resolution during migration
through the separating gel. The intro-
duction of a discontinuous buffer sys-
tem with Tricine (18) has further ex-
tended the range of resolution
SDS-PAGE, by improving the separa-
tion of proteins smaller than 20 kDa.

Vol. 30, No. 2 (2001) BioTechniques 311


Short Technical Reports
We have extensively used the phenol blue, low molecular weight agent was accomplished by suspension
Tricine system for studying the biosyn- marker proteins, and dithiothreitol in the same sample buffer without β-
thesis and purification of human inter- (DTT) were purchased from Bio-Rad mercaptoethanol and then heating in a
feron-inducible protein-10 (IP-10), a Laboratories (Hercules, CA, USA). Io- boiling water bath for 5 min. The sam-
10-kDa chemokine with four conserved dacetamide (IAA) and S-methyl- ples were electrophoresed overnight at
cysteines (15). The chemokine family methane-thiosulfonate (MMTS) were a constant current of 30 mA in a verti-
was so named because of the chemo- purchased from Fluka Chemical (Mil- cal electrophoresis apparatus (Bethesda
tactic and activating properties of its waukee, WI, USA). Research Laboratories, Rockville, MD,
members towards neutrophils, mono- Recombinant human IP-10 was pre- USA). Western blotting of IP-10 was
cytes, and lymphocytes (1,14). The pared as previously described (15) and performed with methodology and anti-
chemokines have variable sequence ho- was stored frozen in small aliquots at sera previously described (15).
mology to one another, and most con- -70°C. The chemical modification of To determine whether the cysteines
tain four cysteine residues. Since the cysteine residues in purified IP-10 was could be successfully blocked while
determination of molecular purity of accomplished by dialysis against 50 protein was suspended in sample solu-
the various IP-10 preparations was es- mM Tris-HCl, pH 8.0, reduction with bilization buffer, we changed the β-
sential for our studies of its biological 20 mM DTT at room temperature for 1 mercaptoethanol to 20 mm DTT. After
activity, all batches of IP-10 were ex- h, addition of IAA or MMTS to a final suspending the specimen in this buffer
tensively analyzed by SDS-PAGE. To concentration of 100 mM, and incuba- and heating in a boiling water bath for
exclude the presence of minor contami- tion for 1 h at room temperature. Modi- 5 min, IAA was added to a final con-
nant, we loaded several micrograms of fied IP-10 was dialyzed extensively centration of 100 mM to block sulf-
purified protein in each lane of SDS- against 140 mM NaCl, 50 mM sodium hydryls and destroy excess DTT. After
PAGE. We noted the appearance of a phosphate, pH 7.2, at 4°C, and was incubation for 20 min at 37°C, speci-
band with an approximate molecular subsequently stored frozen in small mens were analyzed by Tricine-SDS-
mass of 18 kDa, which co-purified with aliquots at -70°C. PAGE as previously described.
IP-10 and was detected in bacterial SDS-PAGE with Tricine was per- After electrophoresis, the gels were
lysates, cell-culture supernatants, and formed as previously described (15) us- stained either with Coomassie brilliant
fractions of intermediate purity. This ing stacking gels containing 6% poly- blue (16) or with the Rapid-Ag Silver
band was also erratically detected in acrylamide and 750 mM Tris-HCl, pH Stain Kit (ICN Biomedicals, Costa
highly purified IP-10 preparations, 8.45, and separating gels consisting of Mesa, CA, USA). To this effect, gels
which had eluted as a single peak from 10%–20% polyacrylamide gradients in were washed twice for 15 min with 250
reverse-phase high-performance liquid 1.0 M Tris-HCl, pH 8.45. We used 200 mL 10% (w/v) trichloroacetic acid,
chromatography and which were mM Tris-HCl, pH 8.9, in the anode transferred to a clean glass dish,
greater than 99% pure by amino termi- reservoir, 100 mM Tris and 100 mM washed twice for 15 min each with
nal sequencing. The ratio of IP-10 (mi- Tricine in the cathode reservoir, and double-distilled water, and then stained
grating as a 10-kDa band) to this appar- 0.1% SDS throughout the system (18). with silver as previously described
ent contaminant also varied widely Ammonium persulfate was prepared as (10). Color development was stopped
when the same highly purified IP-10 a 10% (w/v) stock solution, was stored by soaking the gels in clean glass con-
preparation was analyzed on different in small aliquots at -20°C, and was tainers with 0.1% (v/v) glacial acetic
occasions. This suggested that the 18- thawed only once for use before being acid, 20% (v/v) methanol, and 2% (v/v)
kDa band was an artifact that was gen- discarded. The standard ammonium glycerol, followed by photography and
erated either during sample preparation persulfate concentration of 0.05% was by air drying at room temperature
or SDS-PAGE. used in the stacking and separating overnight as previously described (15).
We demonstrate that the 18-kDa gels, except when 0.1% or 0% ammo-
band is generated by cross-linking of nium persulfate was used in the stack-
the cysteine residues on IP-10 during ing gel, as indicated in the figure leg- RESULTS
the stacking phase of SDS-PAGE. We ends. To stack the proteins without any
also describe simple techniques for the exposure to ammonium persulfate be- All experiments were performed
prevention of this artifact. fore entrance into the separating gel, with highly purified IP-10, which had
we used stacking gel with 2% agarose eluted as a single peak from reverse-
instead of acrylamide. phase high-performance liquid chro-
MATERIALS AND METHODS Samples were routinely solubilized matography and was indistinguishable
by suspending in sample buffer at a fi- from naturally secreted IP-10 (15). Pu-
Acrylamide, bisacrylamide, SDS, nal concentration of 17 mM Tris-HCl, rified recombinant IP-10 was solubi-
and Tris were purchased from Roche pH 6.8, 4% (w/v) SDS, 2% (v/v) glyc- lized at a final concentration of 200
Molecular Biochemicals (Indianapolis, erol, 2% (v/v) β-mercaptoethanol, µg/mL, and increasing amounts were
IN, USA). Ammonium persulfate and β- 0.002 % (w/v) bromophenol blue, and subsequently analyzed in Tricine SDS-
mercaptoethanol were purchased from 0.02% (w/v) pyronin-Y. They were PAGE containing 0.05% ammonium
Sigma (St. Louis, MO, USA). Tricine, then heated in a boiling water bath for 5 persulfate in both the stacking and the
Coomassie Blue, TEMED, bromo- min. Solubilization without a reducing separating gels. When 0.5 or 1 µg of

312 BioTechniques Vol. 30, No. 2 (2001)


the same preparation were loaded, there ed an aggregate of IP-10 generated ei-
was no detectable 18-kDa band (Figure ther during sample solubilization or
1A). However, when 6 or 10 µg IP-10 during SDS-PAGE. We explored these
were loaded in each lane, 30%–50% of alternatives by solubilizing IP-10 at fi-
the material migrated as an 18-kDa nal concentrations of 50, 75, 150, and
band. These results suggested that the 290 µg/mL and by subsequently load-
18-kDa band might represent an impu- ing in each lane different volumes so
rity comprising 30%–50% of the total that the same amount (1 or 3.8 µg) of
protein. However, the intensity of the protein was analyzed in each lane. The
18-kDa band was such that if 30%– 18-kDa band was detected only when
50% of the total protein in the lanes 3.8 µg, but not 1 µg, was loaded, irre-
with 6 or 10 µg IP-10 was a contami- spective of the IP-10 concentration dur-
nant, it should have been easily detect- ing solubilization (data not shown).
ed in the lane containing 1 µg protein These results suggested that the 18-kDa
(Figure 1A). band was not generated during sample
Further experiments demonstrated solubilization.
that both the 10- and 18-kDa bands Therefore, we investigated the re-
were recognized with an antiserum maining possibility, namely that aggre-
against IP-10 in western blotting (re- gation occurred during SDS-PAGE. A
sults not shown). This excluded the pos- likely location for the aggregation of
sibility that the 18-kDa band simply IP-10 was the stacking gel, where pro-
represented an impurity. However, it teins are highly concentrated into a
would still be possible for the 18-kDa very small volume. During this time,
band to represent a heterodimer be- the highly concentrated proteins are ex-
tween IP-10 and a contaminating 8-kDa posed to ammonium persulfate, which
peptide. This was also unlikely because is an oxidant. These conditions would
amino acid analysis and limited amino favor disulfide bond formation.
terminal sequencing confirmed greater To test this hypothesis, IP-10 was an-
than 99% purity for the IP-10 prepara- alyzed by SDS-PAGE with either stan-
tions used in these experiments. dard (0.05%, Figure 1A) or increased
Taken together, these results sug- concentration (0.1%, Figure 1B) of am-
gested that the 18-kDa band represent- monium persulfate. When 6 or 10 µg

Figure 1. Aggregation of IP-10 during SDS-PAGE. Purified protein was solubilized at a final concen-
tration of 200 µg/mL. Increasing volumes (and increasing amounts of protein) were loaded on SDS poly-
acrylamide gels with stacking gels containing 0.05% (A) or 0.1% (B) ammonium persulfate. Both gels
had the standard concentration of 0.05% ammonium persulfate in the separating gels. The amount of
loaded protein is shown in micrograms at the top of each lane. MW, molecular mass markers, whose sizes
are indicated by the numbers on the side of the figure.

Vol. 30, No. 2 (2001) BioTechniques 313


Short Technical Reports
proteins were loaded, the formation of
the 18-kDa band increased as the con-
centration of ammonium persulfate in-
creased from 0.05% to 0.1%. Aggrega-
tion was not detectable with 0.5 or 1.0
µg IP-10 at either 0.05% or 0.2% of am-
monium persulfate in the stacking gel.
To determine if sulfyhydryl oxida-
tion was involved in the formation of
the 18-kDa band, we reduced IP-10
with DTT and then blocked the
sulfhydryls irreversibly with IAA, or
reversibly with MMTS (2,19). Subse-
quently, native or modified IP-10 was
solubilized with or without β-mercap-
toethanol and was analyzed by SDS-
PAGE containing varying concentra-
tions of ammonium persulfate in the
stacking gel. When unmodified IP-10
was solubilized by heating in sample
buffer without β-mercaptoethanol and
analyzed in gels of varying ammonium
persulfate concentrations (Figure 2, A,
B, and C, right column of gels, lane
NONE), we detected the 18-kDa band
and larger bands. This suggests that in
our recombinant IP-10 preparations the
sulfhydryl bridges are not formed and
that heating without reducing agent
causes aggregation. Unmodified IP-10
showed progressive generation of the
18-kDa band when solubilized with
β-mercaptoethanol as ammonium per-
sulfate concentration in stacking gel in-
creased from 0% to 0.1% (Figure 2, A,
B, and C, lane NONE, left column of
gels). IP-10, irreversibly modified by
IAA, migrated as a 10-kDa monomer,
whether it was solubilized in the pres-
ence or absence of β-mercaptoethanol
and subsequently analyzed through
stacking gels containing 0%, 0.05%, or
0.1% ammonium persulfate (Figure 2,
lane IAA). This suggests that, when
sulfhydryls are irreversibly blocked,
aggregation is not possible. IP-10,
modified by MMTS, also migrated as a
monomer at 10 kDa when solubilized
without β-mercaptoethanol and ana-
lyzed with stacking gels containing 0%,
0.05%, and 0.1% ammonium persulfate
(Figure 2, lane MMTS, right stack of
Figure 2. Modification of sulfhydryls prevents IP-10 aggregation. Purified IP-10 was modified with
gels). These results are consistent with IAA or MMTS, as described in Materials and Methods, and then solubilized at a final concentration of 60
those derived with IAA modification µg/mL in solubilization buffer with β-mercaptoethanol (left column of gels designated with BME) or
and suggest that the aggregation does without β-mercaptoethanol (right column of gels designated without BME). Subsequently, 3 µg protein
not occur in the absence of reduced were analyzed in gels with 0.05% (A), 0.1% (B), or 0% (C) ammonium persulfate in the stacking gel IP-
10. Modification by IAA or MMTS is indicated at the top of each lane. NONE indicates native IP-10,
sulfhydryls. However, when reduced which was solubilized and analyzed without any chemical modification. BME indicates the presence of
sulfhydryls were regenerated by reduc- β-mercaptoethanol in the solubilization buffer. MW, molecular mass markers, whose sizes are indicated
tion of MMTS-treated IP-10 (Figure 2, by the numbers on the side of the figure.

314 BioTechniques Vol. 30, No. 2 (2001)


lane MMTS, left column of gels), the subsequent blockade by IAA, should be phase of SDS-PAGE. Presumably, the
18-kDa aggregate appeared, and its performed in well-buffered solutions to concentration of IP-10 in a thin band
amount increased as the ammonium maintain the necessary slightly alkaline away from the bulk of the SDS and β-
persulfate concentration rose to 0.1%. pH. Proteins should then be dialyzed, mercaptoethanol in the stacking gel fa-
We attempted to irreversibly modify quantitated, solubilized in sample cilitates the formation of disulfide
the sulfhydryls when IP-10 was sus- buffer, and analyzed by SDS-PAGE. bonds, provided that a critical protein
pended in SDS-PAGE sample buffer to concentration is exceeded and that suf-
simplify the analytical procedures and ficient oxidant concentration is present.
minimize the loss of protein during DISCUSSION The detection of aggregation when IP-
dialysis. However, large amounts of the 10 was analyzed with SDS-PAGE hav-
18-kDa band were observed with this We demonstrated that IP-10 aggre- ing stacking gels of agarose, without
approach (data not shown), suggesting gates during stacking of proteins in any ammonium persulfate, suggests
that a blockade of sulfhydryls was not SDS-PAGE. This aggregation is depen- that there is enough ambient oxygen to
efficient in sample buffer. We suspect dent on reduced sulfhydryls, on the catalyze the oxidation of sulfhydryls.
that the generation of hydrogen ions amount of loaded protein, and on the Artifactual protein aggregation has
(estimated at 40 mM for a complete re- concentration of ammonium persulfate been previously reported during SDS-
action of 20 mM DTT by 100 mM in the stacking gel and can be prevent- PAGE. Reversible aggregation of the
IAA) greatly exceeded the available ed by irreversible blockade of sulf- sialoglycoproteins of the murine and
buffering capacity of the solution (total hydryls by IAA. human erythrocyte ghosts in both con-
concentration of Tris was 17 mM). At These results suggest that solubi- tinuous and discontinuous buffer SDS-
the ensuing acidic pH, sulfhydryl modi- lization of proteins in SDS in the pres- PAGE was observed after boiling in a
fication by IAA is expected to be inef- ence of reducing agents does not sample buffer at high protein concen-
fective. Therefore, we suggest that re- always protect sulfhydryls from subse- trations and was presumably dependent
ductions of sulfhydryls, and their quent oxidation during the stacking on methionine sufloxide formation.
Short Technical Reports
These sialoglycoprotein multimers treated free acrylamide present in the proteins during the assembly of the head of
could be dissociated by heating the SDS gels (9). bacteriophage T4. Nature 227:680-685.
12.Lane, L.C. 1978. A simple method for stabiliz-
samples at lower protein concentrations However, protein aggregation caused ing protein-sulfhydryl groups during SDS-gel
(6–8,17). Since IP-10 aggregation was by disulfide bond formation during electrophoresis. Anal. Biochem. 86:655-664.
independent of protein concentration stacking of discontinuous SDS-PAGE 13.Opoku, J. and S.S.J. Simons. 1994. Absence
during solubilization in sample buffer, has not been previously reported, to our of intramolecular disulfides in the structure and
this was not the mechanism in our case. knowledge. Significant aggregation was function of native rat glucocorticoid receptors.
J. Biol. Chem. 269:503-510.
Oxidation of cysteines and forma- observed even after complete elimina- 14.Oppenheim, J.J., C.O. Zachariae, N. Mukai-
tion of intramolecular disulfide bonds tion of ammonium persulfate (by using da, and K. Matsushima. 1991. Properties of
has also been detected during SDS- agarose in the stacking gel). This sug- the novel proinflammatory supergene “inter-
PAGE of the rat glucocorticoid recep- gested that there was enough ambient crine” cytokine family. Annu. Rev. Immunol.
tors, where it generated diffuse bands oxidant around to catalyze the aggrega- 9:617-648.
15.Sarris, A.H., H.E. Broxmeyer, U. Wirth-
and minor molecular weight shifts (13). tion of IP-10. mueller, N. Karasavvas, S. Cooper, L. Lu, J.
Similarly, oxidation of cysteines medi- The methodology reported here may Krueger, and J.V. Ravetch. 1993. Human in-
ated by persulfate has been reported help detect and prevent aggregation of terferon-inducible protein 10: expression and
during isoelectric focusing of human other chemokines and possibly of other purification of recombinant protein demon-
strate inhibition of early human hematopoietic
globin chains, where it caused artifac- sulfhydryl-containing proteins. It may progenitors. J. Exp. Med. 178:1127-1132.
tual band heterogeneity (3–5). Cysteine also be useful when purity is being as- 16.Sarris, A.H. and G.E. Palade. 1979. The
oxidation and formation of intramolec- sessed by analysis of large amounts of sialoglycoproteins of murine erythrocyte
ular disulfide bonds is also responsible protein. ghosts. A modified periodic acid-Schiff stain
procedure staining nonsubstituted and O-acety-
for the doublets generated by some pro- lated sialyl residues on glycopeptides. J. Biol.
teins in Laemmli or Tricine SDS-PAGE Chem. 254:6724-6731.
(12,18). This artifact could also be pre- REFERENCES 17.Sarris, A.H. and G.E. Palade. 1982. Isolation
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