Professional Documents
Culture Documents
- Use of PPE to be safe from harmful incidents once you - Health worker should undergo fit
are exposed from biological hazards testing regularly
- You are protecting yourself from the pathogens - N95 mask = a commonly used DR
2. BIOSECURITY
- the protection, control, and accountability for valuable - Always perform a USER SEAL
biological materials including information in laboratories in CHECK
order to prevent unauthorized access, loss, theft, - Goggles or a disposable face shield
misuse, diversion, or INTENTIONAL release of that covers the front and side of the face
pathogens and toxins FACE
Keep bad people from bugs SHIELD - Personal eyeglasses and contact
lenses are NOT considered adequate
- You are protecting the biological materials from bad eye protection
people - Change gloves
Ex. bioterrorism Torn
Heavily contaminated
PRINCIPLES OF BIOSAFETY In bet. patients and procedure
1 Containment
Recognize and Assess Biological Hazards and - Use clean gloves when handling pens
2 GLOVES and other didactic materials
Laboratory Associated Infections
3 Promote Safe Microbiological Practices
- Remove and discard gloves when
1. CONTAINMENT leaving the patient room or care area
- Preventing the release of the infectious agent to the
environment and it is achieved thru: - Always perform hand hygiene after
Safety Equipment: design to protect from injury removing gloves
or the spread of infection or illness. ORDER OF DONNING AND DOFFING
Facility Design: take into consideration the DONNING DOFFING
movement of people, specimens, and laboratory 1 Hand Gloves Shoe cover
waste and equipment 2 Inner gloves Outer gloves
(Good) Laboratory Practices: most important 3 Coverall Face shield
element of laboratory containment 4 Respiratory Coverall
A. PPEs 5 Face shield Respiratory
- designed to protect from injury or the spread of infection 6 Shoe cover Inner gloves
or illnesses 7 Outer gloves Hand hygiene
Lab gown SAFETY EQUIPMENTS FACILITY DESIGNS
Face mask - Biosafety cabinets
Respirator - PPE - Basic laboratory
Face shield - Enclosed containers - Containment laboratory
Gloves - Vaccination (provide - Maximum Containment
increased level of Laboratory
- Put on clean isolation gown upon
protection)
entry into the patient room or area
PRIMARY BARRIERS SECONDARY BARRIERS
- Change the gown if it becomes soiled Most Important Element/ Concept:
LAB GOWN GOOD MICROBIAL LABORATORY PRACTICES
- Properly discard used or
contaminated lab gown into a BIOLOSAFETY CABINET
dedicated container or contaminated - ventilated enclosure
linen before leaving the patient area Class: I, II, III
FACE MASK - Protects healthcare workers from Level: 1, 2, 3, 4
contact w/ infectious materials from - also known as
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BIOSAFETY LEVEL
- A level of the biocontainment precautions required to
isolate dangerous biological agents in an enclosed facility
CORE REQUIRMENT FOR BSL 2 LABORATORY
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1 Good Microbiological Practice and Procedure - Protection, control and accountability for valuable
2 Personnel Conference and Training biological materials within the laboratories to prevent
3 Specimen receipt and storage unauthorized access, loss, theft, misuse, diversion or
4 Facility design intentional release
5 Emergency Response plan
6 Biosafety Cabinet and Laboratory Equipment BIORISK ASSESSMENT
7 Decontamination and waste Management - Considered as the backbone of biological risk
8 Occupational Health management, biosafety, and biosecurity.
9 Personal Protective Equipment
10 Controlled/Limited access to laboratory - Performed as often as needed
11 Clean to dirty work flow
ENHANCEMENT FOR BSL 2 LABORATORY -CONSIST OF
Directional Airflow Risk Assessment BEGINS with: HAZARD
1 - Airflow from low area of contamination to higher IDENTIFICATION
area of contamination o DONE by BIOSAFETY OFFICER
2 Training And Proficiency Define Preventive Measures
3 Working In Buddy System Sound Allocation of Resources
4 Strict Monitoring of Equipment and Facility Basic Legal Requirement
5 Strict Monitoring of Body Temperature AMP MODEL
6 Restriction Of Work to Authorized Personnel Only Assessment
risk identification
PROPER HANDWASHING 1 hazard threat identification
1 Wet hands with running water likelihood evaluation
2 Apply enough soap to cover all hand surfaces consequence evaluation
3 Rub hands, palm to palm Mitigation
Right palm over left dorsum with interlaced fingers, elimination/ substitution
4 engineering controls
and vice versa
2
5 Palm to palm with fingers interlaced administrative controls
Back of fingers to opposing palms with fingers practices and procedures
6
interlocked PPE
Rotational rubbing of left thumb clasped in right palm Performance
7
and vice versa control
Rotational rubbing, backwards and forwards with 3
assurance
8 clasped fingers of right hand in left palm, and vice improvement
versa RISK MANAGEMENT PROCESS
9 Rinse hand with water 1 Identify the hazard
1 Dry hands thoroughly with single use towel 2 Assess the risk
0 3 Control the risk
1 Use of towel to turn off faucet 4 Review the control plan
1 HAZARD VS THREAT
HAZARD THREAT
STEPS IN WASTE MANAGEMENT - anything in the - PERSON W/ means
1 Segregation environment that causes motives and opportunities
2 Collection something bad or to cause and access, theft and
3 Treatment harm misuse of isolates and
4 Storage Physical biological materials
5 Transport Material Intentional
6 Final Disposal Activity
MITIGATION
BIOLOGICAL WASTE COLOR CODING - Actions and control measures that are put into place
COLOR TYPE OF to reduce or eliminate the risks associated with
TYPE OF WASTE
CODE CONTAINER biological agents and toxins
Non-infectious DRY - most effective
BLACK waste ELIMINATION
- physically remove the hazard
Trash bin/ plastic (boxes, papers) - replacement of the procedure
bag Non-infectious WET SUBSTITUTION or biological agent with a similar
GREEN waste entity
(food) ENGINEERING - physical changes in work
Infectious/ CONTROLS stations, equipment’s,
Plastic bag
YELLOW Pathological Waste production facilities, etc.
(double bagging)
(tubes, cottons) includes facility design,
Sharp isolate workers from
RED Puncture-proof
(syringes, needles) the hazard
ORANGE Containers Radioactive
- AIR HANDLING = the air must
BIOSECURITY flow from an area of lower
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Clinical Internship 1
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contamination to an area of
higher contamination
inward directional
airflow
- change the way work is
performed
Approved SOP
(Standard Operating
ADMINISTRATIVE Procedure) must be in
CONTROLS place
There must be
established and
maintained system for
emergency response
- devices worn by workers to
protect them against chemicals
PPE toxins and pathogenic hazards
in the laboratory
Least effective
AUTOCLAVE
- GEOBACILLUS STEAROTHERMOPHILUS (Biological
indicator)
rod-shaped, gram-positive
thermophile: resistance to heat
Biological indicator; test the success of
sterilization cycles
Check water level – 3L (3,000 mL)
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sterilization
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1. PRE-ANALYTICAL PHASE
- complex steps that must take place before a sample can
be analyzed such as test ordering, and sample collection
TOPIC 3: PHLEBOTOMY
Speaker: Jason Paul V. Sarian, RMT
PHLEBOTOMY
-CAUSES -derived from Greek word
Phlebo = vein
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S – surgical/ C-cytologic
TOPIC 4: BASIC HISTOPATHOLOGIC TECHNIQUES
Speaker: Sir Ceasar Abigania, RMT
HISTOPATHOLOGY
- concerned with the diagnosis of abnormalities within
tissues and cells by microscopic examination
HISTOLOGY = normal cells
HISTOPATHOLOGY = abnormal cells SCHEDULING OF FROZEN SECTION, FNAB, &
ULTRASOUND/CT SCAN GUIDED BIOPSIES
-etymology - scheduled at least 2 days prior to procedure
Histo = tissue
Pathos = suffering - FNAB, CT/Ultrasound guided biopsy = performed by
PATHOLOGIST
Logos = study
1. FIXATION
SPECIMEN COLLECTION, PRESERVATION,
- The process of fixation can produce ARTIFACTS in the
RECEIVING, AND LABELLING
tissues if the procedure is not carried out under optimal
A. SPECIMEN COLLECTION & PRESERVATION
conditions
- TYPES
Purpose: to prevent autolysis
Routine Histological Examination
Most critical step
Frozen Section
Routine Non-Gynae Cytology - AIM
A. ROUTING HISTOLOGICAL EXAMINATION preserve morphologic and chemical integrity
- all specimens for routine histological examination must of cell = primary
be collected into containers of FORMALIN solution o Done by stabilization of protein
10% NEUTRAL BUFFERED FORMALIN
harden and protect tissue from trauma =
secondary
- there must be sufficient formalin in the container to
completely cover the specimen
- If fixative does not have proper access to the tissues or
because of the nature and quality of the reagent used
- Specimen must NOT be placed into another solution or
FORMALIN PIGMENT
into a dry container
- This pigment appears as brown to black, finely granular
B. FROZEN SECTION
associated with, or in the vicinity of RBCs
- Specimens for frozen section is processed w/o
preservative and must be placed in a suitably sized dry
- most often seen in tissues rich in blood such as spleen
specimen container and transferred immediately to the
and in tissues w/c have had prolonged fixation
Histopathology section
TAT = 15mins - artifact can be removed by treating the section w/
C. ROUTINE NON-GYNAE CYTOLOGY SATURATED ALCOHOLIC PICRIC ACID solution prior
- must be freshly collected and placed in a sterile to staining or prevented by using BUFFERED
container FORMALIN solution and restricting fixation time
Papsmear, pleural fluid
B. SPECIMEN RECEIVING, LABELLING, &
ACCESSIONING 2. GROSSING
- All histopathology specimens shall be received and - brain = fix grossing (Exception)
logged at the histopathology section during its operation
hours - Check for SSCC
- All specimens must be properly and legibly labelled with *S- SIZE
the ff: - 3D measurement (in cm)
Patient’s name, Length
Age and sex Width
date & time of collection, Height
type of specimen
Accession number -2D (cm)
Length
- All specimens must be properly logged and Width
accessioned in the corresponding receiving logbook
Surgical Logbook *S-SHAPE
Cytology Logbook - Tubular
o Pap smear Appendix
o Aspirates Gallbladder
- Irregular
- The request form and the specimen container shall be A – typical appearance
labeled with the assigned accession number *C-COLOR associated with RBCs in
- Grayish-Tan kidney section
B- Pigment in a Page
section12ofof 20
fatty liver where it is also
deposited in the vicinity of
RBCs
Clinical Internship 1
Internship 1 - EACMED Transcribed by: AAA
Carbon tetrachloride = same w/ chloroform but -method for the preparation of thin sections for material
cheaper such as bones, minerals, and teeth, and an alternative to
Methyl benzoate = double embedding electopolishing and ion milling
Mikros = small
5. INFILTRATION/ IMPREGNATION Temnein = to cut
- process of complete removal of clearing reagents by
substitution of paraffin or any such similar media such as WATER BATH = 45-50 C
beeswax Depend on infiltrating medium = 6-10 degrees
below melting point of infiltrating medium
-cleared tissue is infiltrated w/ wax (usually paraffin) which 2 segments in 1 slide
is liquid at 60 C and then allowed to cool to 20 C in order Albumin, plasma, serum = for ribbon to adhere
to solidify into a consistency that allows sections to be cut more effectively on slides
o Not applicable for IHC
-CARBOWAX = aqueous impregnation medium Positive slide = natural adhesive
Fixation to directly impregnation
OVEN = 2-5 degrees above
6. EMBEDDING, CASTING, AND MOLDING Too high = fry, pyknotic
- process by w/c tissues are surrounded by a medium Too low = paraffin will not melt
such as agar, gelatin, or wax w/c when solidified will
provide sufficient external support during section Panel
- Preferred: PARAFFIN WAX -thickness (4-6 micron)
ORINETATION –
15 degrees = optimum angle
-SUBSTITUTE FOR PARAFFIN WAX Clearance angle = 3-8
Paraplast (MP 56-57 C) = synthetic polymer Bevel angle – 27-32
o Stronger than paraffin
o Used in the laboratory 10. STAINING
Embeddol (MP 56-58C) – less brittle than - Process whose purpose is to optically differentiate the
paraplast cell, cellular and tissue constituents by variation in color.
Bioloid – for ice ROUTINE HISTOPATHOLOGY STAIN
Tissue mat – REAGENT TIME/DIPS
Ester wax (MP 46-48C)– most commonly used 1
Xylene (2x) 5 minutes
Carbowax = no need for dehydration and 2
clearing 95% ethyl alcohol
o Dissolve in water bath 3 - rehydration 5-10 dips
Celloidin – for frozen section/ CNS specimen Stains are aqueous dyes
Running H2O
4 5 dips
7. BLOCKING - for specimen to become aqueous
- remove cassette from mold HEMATOXYLIN
-nuclear stain
5 20 minutes
-block is now read for section (microtomy) Nuclei = red (Temporarily)
Organelles/ cytoplasm = blue
8. TRIMMING Running H2O
6 5-10 dips
- removing excess wax from block, so that it forms a 4- -remove stain
sided prism or until it assumes the shape of a truncated Acid Alcohol
pyramid opposite side being parallel 7 - decolorizer 1 dip
removes stain in cytoplasm
-at least 2mm of wax should surround the tissue block 8 Running H2O 5-10 dips
COARSE trimming = sides, tips, bottoms are Ammonia
trimmed 9 2 dips
- bluing agent (blue)
FINE trimming = to expose tissue 1
Running H2O 5 dips
0
9. CUTTING EOSIN Y
-TYPES OF MICROTOME - cytoplasmic stain/ counter stain
1
Rotary = paraffin-embedded (most common) Y = yellowish 5-10 dips
1
o 4-6 micra B = bluish
o Used in the laboratory YB = yellowish-bluish
Cryostat = 4-6 micra 1 95% ethyl alcohol
5-10 dips
Rocking = large blocks (10-12) 2 - differentiate cytoplasm/ organelles
Sliding = celloidin (4-9 micra) 1
o Most dangerous type 3 Xylene (2x)
2 minutes
Freezing = unembedded tissue section (fresh) 1 - intensify refractive index of tissue
Ultra thin = 500 – 1,200 4
Semi thin = 0.5 – 1 microns 1
Blow dry
5
MICROTOMY 1 Labelling
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11. MOUNTING
- (2ND to the) Last procedure in the series that ends with
a permanent histological preparation on the table, well
after the tissue processing and staining.
12. LABELLING
- Most (last) important step in histopathology technique
FROZEN SECTION
The frozen section is the rapid tissue section by cooling
the tissue with the help of CRYOSTAT to provide
immediate report of the tissue sample.
CRYOSTAT is the instrument to freeze the
tissue and also to cut the frozen tissue for
microscopic section.
Temperature: -20 C
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3 Hematocrit (Hct)
4 WBC count
5 WBC Differential Count
6 Platelet Count
ANTICOAGULANTS
Color Action Test
Routine
EDTA Lavender Chelates Ca hematology
(CBC)
Binds w/
Coagulation
calcium
Trisodium Test (1:9)
Blue
TOPIC 5: ESSENTAILS OF COMPLETE BLOOD citrate
Preserves RBC
COUNT D-dimer
morphology
Speaker: Ma’am Ray-Ann, RMT Osmotic
fragility of
ESSENTIALS OF CBC erythrocytes
1 Pre-examination and Post-examination Phase Binds and
(OFT)
2 Technical Procedures Heparin Green enhance action
Quality Assurance in CBC and Quality Control of anti-thrombin
3 Immuno-
Procedures phenotypin
g
PHASES OF EXAMINATION *NOTE
1. PRE-EXAMINATION - Clotted blood specimen are UNACCEPTED (False ↓)
- includes specimen handling issues that occur even prior
to the time the specimen is received in the laboratory. ORDER OF DRAW
“Stop Light Red, Stay Put Green, Let’s Go”
- Important errors can occur during this phase with COLOR COLLECTION TUBE INVERSION
specimen and identification Yellow
(PEDIA)
-VARIABLES Blood culture – SPS 8-10 times
Green
Selection of assay relative to patient need (Adults)
Implementation of assay selection Blue Sodium Citrate tube 3-4 times
Patient identification and preparation Serum tube or gel
Specimen collection, equipment, and technique separator None (glass)
Specimen transport, preparation, and storage Red
Monitoring of specimen condition (Plastic = w/ clot 5 times (plastic)
2. EXAMINATION activator)
-VARIABLES Green Heparin tube 8-10 times
Centrifugation of red top tubes for electrolyte Purple EDTA tube 8-10 times
tests Fluoride (glycolytic
3. POST EXAMINATION inhibitor) tube
Gray 8-10 times
- The final phase of the laboratory process.
ESR
- This phase culminates in the production of a final value,
result, or in the case of histology, a diagnostic pathology EFFECT OF STORAGE ON BLOOD COUNT
report. - stable for 8-24 hours when stored at 4 C
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- PRINCIPLE
MATERIALS USED Whole blood is diluted with a weak acid solution
1. HEMACYTOMETER: NEUBAUER COUNTING to lyse the red cells and facilitate counting of
CHAMBER leukocytes
- is a technique used to enumerate the total cell count in
the blood or other biological body fluids -SPECIMEN
- PRINCIPLE
blood is diluted with appropriate known volume
of diluting fluid and then counting is done by
using hemocytometer
2. THOMA PIPETTE
- Consists of graduated capillary
rube, mixing bulb with glass bead
and aspirating tube
RBC and PLATELET =
101th mark
WBC and SEMEN = 11th mark
3. DILUTING FLUIDS
A. GLACIAL ACETIC ACID – WBCs
- Destroys (lyses) RBCs and platelets
4. TALLY COUNTER
- for counting cellular elements
WBC COUNT
MANUAL METHOD
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-SAHLI’S HEMOGLOBINOMETER
COMPUTATION
*RBC and WBC count
Cells counted X DF X volume correction factor PROCEDURE
1 Place N/10 HCl into Hb tube up to 2 gram
Volume of 1 square X No. of squares 2 Blood sample in Sahli’s Hb pipette up to 20 uL
3 Add blood sample to acid solution
*VOLUME CORRECTION FACTOR 4 Mix with a stirrer
5 Allow to stand for 10 minutes
*TOTAL CELL COUNT Add distilled water drop by drop till the color of the
6
solution matches to brown glass standard
N × Dilution Factor 7
Take the reading of the lower meniscus from the
graduated tube in grams
Depth ( 0.1 ) × Area counted
RBC INDICES
Counting of RBCs by MANUAL METHOD is NOT -includes
RECOMMENDED due to poor reproducibility, and Mean cell volume (MCV)
therefore, poor precision Mean cell hemoglobin (MCH)
Mean cell hemoglobin concentration (MCHC)
PACKED CELL VOLUME / ERYTHROCYTE VOLUME 1. MEAN CELL VOLUME
FRACTION (HEMATOCRIT – HCT) Average volume of the red blood cell (RBC)
- It is the volume percentage of RBCs in blood.
When verifying hematocrit
- PARTS OF HCT
Fatty layer
Plasma
Buffy Coat
2. MEAN CELL HEMOGLOBIN
Packed RBC - average weight of hemoglobin (Hb) in the RBC
Wax plug
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Clinical Internship 1
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PROCEDURES
1 Prepare the control
Select Display/Run Icon to display the sample
2 analysis-patient results screen. The door
automatically opens
Click next icon and use the bar-code scanner to the
3
control bar code and select Check Icon
4 Mix the control
Fully insert the control into the tube holder and select
5 Run Icon. The door automatically closes to initiate
the analysis.
Remove the control when the door opens, and the
6
control is finished processing.
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