Professional Documents
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THE ARCHAEA
● More closely related to Domain Eukarya than to
Bacteria
○ Share ribosomal RNA sequences not
found in bacteria
○ Protein synthesis and ribosomal subunit ● Requires salt ot grow
structures are similar ● They can thrive and multiply in as high as 36%
● Differences from other cell types: NaCl composition of that body of water
CHUA, D. J., CHUA, L. R., CLAVERIA, CONCEPCION, CORNILLEZ, CRUZ, C. D., CRUZ, M. K., DE CASTRO, DE CHAVEZ, DE JESUS, DE VILLA, DEL
CASTILLO, DELGADO, S. V., DIMAANO, H. V., DOLIENTE, DONAIRE| 1NU04
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○ Bacteria exposed to this high of NaCl will ■ Shape
just die immediately because the cells will ■ Arrangement
undergo lysis ■ Growth characteristics
● They can survive in very salty area ■ Habitat
● They used a red pigment to synthesize ATP in the ○ Recent years
presence of sunlight ■ Biochemistry
■ Genetics
PSYCHROPHILES AND HYPERTHERMOPHILES ■ Molecular traits
● This is why the bacteria and archaea are
reclassified as different group of microorganisms
TAXONOMIC SCHEME
● Psychrophiles
○ Grow at very low temperature (very cold
places)
CHUA, D. J., CHUA, L. R., CLAVERIA, CONCEPCION, CORNILLEZ, CRUZ, C. D., CRUZ, M. K., DE CASTRO, DE CHAVEZ, DE JESUS, DE VILLA, C., DEL
CASTILLO, DELGADO, S. V., DIMAANO, H. V., DOLIENTE, DONAIRE, G. A.| 1NU04
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clinically because microorganisms, particularly
bacteria, are classified whether it's gram-positive,
gram-negative or bacteria without a cell wall and
they are more subdivided based on their
shape,arrangement, and oxygen usage.
● Bacillus
Bacterial Size
CHUA, D. J., CHUA, L. R., CLAVERIA, CONCEPCION, CORNILLEZ, CRUZ, C. D., CRUZ, M. K., DE CASTRO, DE CHAVEZ, DE JESUS, DE VILLA, C., DEL
CASTILLO, DELGADO, S. V., DIMAANO, H. V., DOLIENTE, DONAIRE, G. A.| 1NU04
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Streptobacillus sp
● Curved
COCCI
Vibrio cholera
● Diplococci: pairs
○ Example:
■ Neisseria species - could cause
gonorrhea or meningitis in
humans
■ Streptococcus pneumoniae -
could cause respiratory disease
(pneumonia)
● Tetrads: groups of four
● Staphylococci and micrococci: irregular clusters
● Streptococci: chains of a few to hundreds of cells
● Sarcina: cubical packet of 8, 16, or more cells
BACILLI
● Diplobacilli: pairs of cells with their ends attached
○ Examples:
■ Klebsiella species
■ Moraxella
■ Coxiella burnetii
● Streptobacilli: chains of cells
○ Examples:
■ Streptobacillus moniliformis -
responsible for rat bite fever
(present in the saliva of the rats)
● Coccobacilli: short and stumpy
○ Examples:
■ Chlamydia trachomatis -
sexually transmitted infection
■ Haemophilus influenzae - can
cause respiratory disease
especially among children
■ Gardenerella vaginallis - can
cause bacterial vaginosis among
women
● Palisades: cells of a chain remain partially attached
and fold back, creating a side-by-side row of cells
○ Examples:
■ Corynebacterium diphtheriae -
causes respiratory disease
CHUA, D. J., CHUA, L. R., CLAVERIA, CONCEPCION, CORNILLEZ, CRUZ, C. D., CRUZ, M. K., DE CASTRO, DE CHAVEZ, DE JESUS, DE VILLA, C., DEL
CASTILLO, DELGADO, S. V., DIMAANO, H. V., DOLIENTE, DONAIRE, G. A.| 1NU04
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CURVED ● Falls under bacteria without cell walls
○ Therefore, they do now have definite
VIBRIO
shape, their size and hape varies
● Curved rods
● Comma shaped
● Examples:
○ Vibrio cholerae
■ can cause cholera
■ Form of Gastrointestinal problem
■ Causes diarrhea among children
○ Vibrio parahaemolyticus
■ Cause shellfish poisoning
■ Commonly found as “red tide” in
the Philippines
● People who still eat
tahong with this bacteria MYCOPLASMA (SPECIES)
present, will experience ● Display extreme variations in shape due to lack of
diarrhea and eventually cell walls
will die because of ○ They can alter their size and shape since
dehydration and their cell walls are more soft compared to
poisoning other bacterial species
○ Vibrio vulnificus
■ Cause tissue necrosis
■ Like a flesh-eating bacteria
SPIRILLIUM
● Helical shape and fairly rigid bodies.
● Examples:
○ Helicobacter pylori
■ Can cause ulcer either gastric or
duodenal ulcer
○ Campylobacter jejuni
■ Can cause acute gastroenteritis
SPIROCHETE
● Helical shape and flexible bodies.
● Examples
○ Leptospira interrogans
■ Can cause leptospirosis EXTERNAL STRUCTURES
○ Treponema pallidum ● Two major groups of appendages:
■ Cause syphilis ○ Appendages are like the arms and legs of
● A sexually transmitted the bacteria
infection ■ But take note that these
appendages are not present in all
species
■ There are certain bacterial
species that don’t have these
appendages to move
Flagella and axial filaments
● provide motility
CHUA, D. J., CHUA, L. R., CLAVERIA, CONCEPCION, CORNILLEZ, CRUZ, C. D., CRUZ, M. K., DE CASTRO, DE CHAVEZ, DE JESUS, DE VILLA, C., DEL
CASTILLO, DELGADO, S. V., DIMAANO, H. V., DOLIENTE, DONAIRE, G. A.| 1NU04
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PERIPLASMIC FLAGELLA
● For spirochetes (corkscrew-shaped bacteria) - they
have a special/different form of flagella which is
Periplasmic flagella because their flagella is coiled
FLAGELLA within their body.
● Primary function is to confer motility or self ● It contains several Axial filaments.
propulsion
○ Which is the capacity of the cell to swim ● AXIAL FILAMENT
into aqueous habitat ○ Two or more long coiled threads found in
■ Meaning they only use flagella to spirochetes
swim in aqueous habitat like in ○ Internal flagellum enclosed between the
secretions, with waters etc. cell wall and the cytoplasmic membrane
● Filaments ○ Impart a twisting or flexing motion to the
○ This is the one that propels the bacteria to cell (drilling motion)
move
■ Yung maliliit na pale violet sa NOTE:
specimen below They are more capable of entering soft tissues like
○ Filament is attached to the hook and the Leptospira interrogans, they will just swim in the flooded
hook is attached to the basal body in the waters and once they have access or opportunity in an
cell wall open wound then they can enter in that wound and infect
■ They have rings and rod that is that person with Leptospirosis.
anchored to the cell wall/ cell
body of the bacteria
FLAGELLAR ARRANGEMENT
● Polar: flagella attached at one or both ends of the
cell
○ Monotrichous: single flagellum
○ Lopotrichous: small bunches or tufts
○ Amphitrichous: flagella at both poles of
the cell
CHUA, D. J., CHUA, L. R., CLAVERIA, CONCEPCION, CORNILLEZ, CRUZ, C. D., CRUZ, M. K., DE CASTRO, DE CHAVEZ, DE JESUS, DE VILLA, C., DEL
CASTILLO, DELGADO, S. V., DIMAANO, H. V., DOLIENTE, DONAIRE, G. A.| 1NU04
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(2) NEGATIVE CHEMOTAXIS
● movement of a cell away from a repellant or SUGAR COATING
potentially harmful compound S LAYER
○ Since they might die, when they get
● Thousands of copies of a single protein linked
exposed to that chemical stimulus, they
together
will swim away from that area
● Provides protection from environmental conditions
● Only produced in hostile environments
PHOTOTAXIS
● Movement toward light GLYCOCALYX
● Repeating polysaccharide units (sugar) that may or
RUN VS. TUMBLE may not include protein
● RUN/SWIM (1) SLIME LAYER
○ Flagella move in a counterclockwise ● Forms loosely around the cell
rotation ● Protects the cell from loss of water and nutrients
○ This is when bacteria are moving in a (2) CAPSULE
positive chemotaxis, swimming in a ● More tightly bound to a cell than a slime layer
smooth, linear direction ● Denser and thicker than a slime layer
● TUMBLE
○ When exposed to harmful particles, SLIME LAYER CAPSULE
flagella move in a clockwise rotation
○ This stops the momentum of bacteria,
allowing it to change directions easily
NOTE
- Slime layers can be easily penetrated by
substances because of the bases (refer to the
APPENDAGES FOR ATTACHMENT OR CHANNEL encircled parts of the slime layer from the image
FORMATION above). Which means bacteria with slime layer
can easily be killed compared to those with
bacteria with capsule or encapsulated bacteria.
Attachment can enhance pathogenicity in some bacteria
FIMBRIAE
● When bacteria join or combine together they form a
● Small, bristle-like structures sprouting off the sticky substance forming a biofilm.
surfaces of certain bacteria
○ These are very sticky, it can stick to other
bacteria, creating biofilms that could
harbor colonies of bacteria and potentially
be a threat to humans
○ Escherichia coli use these structures to
adhere to intestinal epithelial cells
PILI NOTE
● Long, rigid, tubular structure made of pilin protein. - Image above shows bacteria joined together
● Only found in gram-negative bacteria. forming a biofilm.
● Used in conjugation - Bacteria without capsule appears to be dry (left
Conjugation - Partial transfer of DNA from one cell image). While bacteria with capsule (right image)
to another, somehow like sharing genetic appears to be moist/slimy.
information to one another, not considered as a
means of reproduction
SPECIALIZED FUNCTIONS OF THE GLYCOCALYX
● Production of pili is controlled genetically.
CHUA, D. J., CHUA, L. R., CLAVERIA, CONCEPCION, CORNILLEZ, CRUZ, C. D., CRUZ, M. K., DE CASTRO, DE CHAVEZ, DE JESUS, DE VILLA, C., DEL
CASTILLO, DELGADO, S. V., DIMAANO, H. V., DOLIENTE, DONAIRE, G. A.| 1NU04
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CAPSULES
● Formed by many pathogenic bacteria
● Protect bacteria against phagocytic white blood
cells.
NOTE
- Encapsulated bacteria can evade our immune
system, therefore they are more difficult to keep.
BIOFILMS
● Example: Plaque on teeth protect bacteria
● Infect long-term indwelling artificial devices
○ Ex: IV, Intravenous catheter, IV cannula,
NGT tube, etc.
● Invisible to the naked eye.
CELL ENVELOPE
● Composed of two or three basic layers:
1) Cell wall
2) Cytoplasmic membrane
3) Outer membrane (in some bacteria)
Function:
● Act as a single protective unit
BIOFILM FORMATION
NOTE
- Biofilm formation is a process where bacteria
will colonize a specific area and then after some
time they will start to multiply into thousands of
bacteria then eventually they will secrete a
capsule to create biofilm and inside a biofilm has
many different bacterial species.
CHUA, D. J., CHUA, L. R., CLAVERIA, CONCEPCION, CORNILLEZ, CRUZ, C. D., CRUZ, M. K., DE CASTRO, DE CHAVEZ, DE JESUS, DE VILLA, C., DEL
CASTILLO, DELGADO, S. V., DIMAANO, H. V., DOLIENTE, DONAIRE, G. A.| 1NU04
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COMPARISON OF GRAM-POSITIVE AND ○ NAG = N-acetyl glucosamine
GRAM-NEGATIVE CELL ENVELOPES ○ NAM = N-acetyl muramic acid
● Gram-positive
○ It has a very thick layer of cell wall or
peptidoglycan
● Gram-negative
○ It has a very thin layer of peptidoglycan.
○ Has an outer or extra layer called outer
membrane layer.
● Both of them have cytoplasmic membrane ● Other structures in the cell wall of gram-positive
bacteria are teichoic acid and lipoteichoic acid.
CELL WALL ○ Function as cell wall maintenance and for
● Characteristics of the cell wall: providing acidic charge on the cell surface
○ Helps determine the shape of a bacterium to repel unwanted substances that could
○ Provides strong structural support to keep possibly cause harm on the bacteria.
the cell from bursting or collapsing due to
osmotic pressure THE GRAM-NEGATIVE CELL WALL
Gram-negative
● Single layer of peptidoglycan
Gram-positive
● Several layers of peptidoglycan
CHUA, D. J., CHUA, L. R., CLAVERIA, CONCEPCION, CORNILLEZ, CRUZ, C. D., CRUZ, M. K., DE CASTRO, DE CHAVEZ, DE JESUS, DE VILLA, C., DEL
CASTILLO, DELGADO, S. V., DIMAANO, H. V., DOLIENTE, DONAIRE, G. A.| 1NU04
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● Present in Mycobacterium ● Special carrier mechanisms exist for passage of
● Very-long-chain fatty acid most molecules
● Contributes to pathogenicity of these organisms SECRETION:
● Provides stronger protection ● Discharge of metabolic products into the
● Makes them resistant to certain chemicals and dyes extracellular environment.
● Acid-fast stain used to diagnose tuberculosis and
leprosy (M. leprae)
CHUA, D. J., CHUA, L. R., CLAVERIA, CONCEPCION, CORNILLEZ, CRUZ, C. D., CRUZ, M. K., DE CASTRO, DE CHAVEZ, DE JESUS, DE VILLA, C., DEL
CASTILLO, DELGADO, S. V., DIMAANO, H. V., DOLIENTE, DONAIRE, G. A.| 1NU04
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■ Hold organelles together
ENDOSPORES:
PLASMID:
RIBOSOME:
CHUA, D. J., CHUA, L. R., CLAVERIA, CONCEPCION, CORNILLEZ, CRUZ, C. D., CRUZ, M. K., DE CASTRO, DE CHAVEZ, DE JESUS, DE VILLA, C., DEL
CASTILLO, DELGADO, S. V., DIMAANO, H. V., DOLIENTE, DONAIRE, G. A.| 1NU04
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- Once initiated,proceeds to completion in 1.5 hours.
-Some diseases related to spore persistence, the first one is ● restriction of the range of motion of the jaw.
Bacillus anthracis-are capable of spore relation. Usually, this ● Clostridium tetani bacteria is responsible for
is naturally occurring in the environment and it's not common causing Tetanus (lockjaw) or in medical term
to find in the environment because it is capable of releasing Trismus.
Anthrax. Anthrax is a serious disease wherein the Bacillus NOTE
anthracis is a choice for normal health issues so the famous - Bacteria Clostridium tetani cause spastic
event that occurred before was during the 911 Attack when paralysis which means the muscle is constantly
some terrorists invaded the US. So before the 911 Attack contracted and cannot relax because the facial
random letters were sent to VIP people like muscle is paralyzed.
politicians,soldiers, and so forth. And, these people receiving
letters and opening letters they did not know that they
contain Bacillus anthracis spores. These spores are very Opisthotonus
small and invisible to the naked eye so they develop anthrax.
NOTE
Two types of Anthrax: - The back muscles are contracted and cannot
- Cutaneous Anthrax- is a spore that has reached relax.
the skin. They become activated in this area hence - This is irreversible, once this happens doctors
they eat up the nutrients of the skin causing gangli wait for the patient to die.
or tissue necrosis.
- The more severe is when the spores are being
Clostridium perfringens
inhaled or called Inhalational Anthrax. Once the
spores have reached the respiratory tract, the active
form of bacteria destroys the tissue of the
respiratory tract. Hence, it will lead to acute
respiratory distress syndrome (ARDS) and
eventually the patient will die because of difficulty
breathing.
CHUA, D. J., CHUA, L. R., CLAVERIA, CONCEPCION, CORNILLEZ, CRUZ, C. D., CRUZ, M. K., DE CASTRO, DE CHAVEZ, DE JESUS, DE VILLA, C., DEL
CASTILLO, DELGADO, S. V., DIMAANO, H. V., DOLIENTE, DONAIRE, G. A.| 1NU04
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Clostridium botulinum ○ Involved in acne
● Corynebacterium
○ Diphtheria
● Mycobacterium
○ Tuberculosis, leprosy
NOTE
- This bacteria causes Botulism
- Botulism is a form of paralysis however it is the
opposite of tetanus (instead of spastic, it is
flaccid) meaning the muscles are always relaxed
and it cannot contract.
- This bacteria is also the one being used for botox
injection, however this is safe because the effect
of the botox injected is usually localized only in MEDICALLY IMPORTANT GRAM NEGATIVE
the face while in botulism a huge part of the body BACTERIA
is affected. II. BACTERIA WITH GRAM-NEGATIVE CELL
- This bacteria can usually be found in infected or WALL STRUCTURE
contaminated cans or jars.
Aerobic cocci
● Neisseria
MEDICAL SIGNIFICANCE OF ENDOSPORES ○ Gonorrhea, meningitis
● Endospores are constant intruders where sterility ● Moraxella
and cleanliness are important:
○ Resist ordinary cleaning methods: Aerobic coccobacilli
boiling water, soaps, and disinfectants. ● Moraxella, Acinetobacter
○ Frequently contaminates cultures and
media. Anaerobic cocci
○ Hospitals must protect against endospores ● Veillonella
in wounds. ○ dental disease
○ Destruction of endospores important in the
food-canning industry. Aerobic rods
● Pseudomonas
○ pneumonia, burn infection
NOTE ● Legionella
- Hospitals use a special machine called the ○ Legionnaires’ disease
Autoclave machine to sterilize all surgical
instruments, it uses high temperature and Facultative or anaerobic rods and vibrios
pressure so that the endospores can be killed. ● Escherichia, Edwardsiella, Citrobacter,
Salmonella (typhoid fever), Shigella (dysentery),
MEDICALLY IMPORTANT GRAM POSITIVE Klebsiella, Enterobacter, Serratia, Proteus,
BACTERIA Yersinia (one species causes plaque), Vibrio
(cholera, food infection), Campylobacter, Aeroma
I. BACTERIA WITH GRAM-POSITIVE CELL
WALL STRUCTURE
Anaerobic cocci
● Peptococcus, Peptostreptococcus
○ Involved in wound infections
Endospore-forming rods
● Lactobacillus, Listeria, Erysipelothrix
○ Erysipeloid
● Propionibacterium
CHUA, D. J., CHUA, L. R., CLAVERIA, CONCEPCION, CORNILLEZ, CRUZ, C. D., CRUZ, M. K., DE CASTRO, DE CHAVEZ, DE JESUS, DE VILLA, C., DEL
CASTILLO, DELGADO, S. V., DIMAANO, H. V., DOLIENTE, DONAIRE, G. A.| 1NU04
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