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Blocking peptides against HBV: PreS1 protein selected from a phage display library
Wei Wang, Yang Liu, Xiangyang Zu, Rui Jin, Gengfu Xiao ⇑
State Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, PR China
a r t i c l e i n f o a b s t r a c t
Article history: The PreS1 protein is present on the outermost part of the hepatitis B virus (HBV) surface and has been
Received 1 August 2011 shown to have a pivotal function in viral infectivity and assembly. The development of reagents with high
Available online 11 August 2011 affinity and specificity for PreS1 is of great significance for early diagnosis and treatment of HBV infection.
A phage display library of dodecapeptide was screened for interactions with purified PreS1 protein. Align-
Keywords: ment of the positive phage clones revealed a putative consensus PreS1 binding motif of HXnHXmHP/R.
Hepatitis B virus (HBV) Moreover, a peptide named P7 (KHMHWHPPALNT) was highly enriched and occurred with a surprisingly
PreS1
high frequency of 72%. A thermodynamic study revealed that P7 has a higher binding affinity to PreS1
Phage display
Peptide
than the other peptides. Furthermore, P7 was able to abrogate the binding of HBV virions to the PreS1
Blocking antibody, suggesting that P7 covers key functional sites on the native PreS1 protein. This newly isolated
peptide may, therefore, be a new therapeutic candidate for the treatment of HBV. The consensus motif
could be modified to deliver imaging, diagnostic, and therapeutic agents to tissues affected by HBV.
! 2011 Elsevier Inc. All rights reserved.
0006-291X/$ - see front matter ! 2011 Elsevier Inc. All rights reserved.
doi:10.1016/j.bbrc.2011.08.014
634 W. Wang et al. / Biochemical and Biophysical Research Communications 412 (2011) 633–637
tography (Qiagen, Valencia, CA) and desalted with a Waters C18 mined by a reference run were subtracted from the experimental
column. values. Calorimetric data were analyzed using MicroCal ORIGIN
software 5.0. The amount of heat evolved upon the addition
2.2. Library screening of ligand can be represented by the equation
Q ¼ V 0 DHb ½M$t K a ½L$=ðl þ K a ½L$Þ, where V0 is the volume of the
The (Ph.D.)-12 peptide library was used to screen for PreS1 chamber, DHb is the enthalpy of binding per mole of ligand, [M]t
binding peptides by the biopanning procedure according to the is the total macromolecule concentration including bound and free
manufacturer’s protocol. In short, biopanning was carried out by fractions, Ka is the binding constant, and [L] is the free ligand con-
incubating the phage display library (1011 phages/ml), which ex- centration. The enthalpy change for each injection series was cal-
pressed random peptides that were 12 amino acids in length with culated by integrating the area under the recorded peaks for the
the target protein. After washing away the unbound phage, a enthalpy changes and then subtracting the value for the control
bound phage was eluted in Tris-buffered saline (TBS) and amplified titration.
in Escherichia coli ER2738. The amplified phage was titered to
determine the concentration and then subjected to the next round. 2.7. Inhibitory activity of synthetic peptides
After five rounds of biopanning, all 39 plaques from the optimal
titering plate (plate have < 100 plaques) were picked and The inhibition activity of the synthetic peptides was evaluated
amplified. via ELISA (Fig 4A). The detection of PreS1 using a commercial diag-
nostic kit for HBV PreS1 antigen (Kehua Biotech, Shanghai, China)
2.3. DNA sequencing was performed according to the manufacturer’s instructions.
Two-fold serial dilutions of the peptides were incubated with the
Single-stranded DNA from selected amplified phage clones was equivalent volume of positive control solution that contained
isolated by denaturing the coat proteins with iodide buffer (10 mM HBV virions at 37 "C for 1 h. The mixture was transferred to micro-
Tris–HCl, 1 mM EDTA, and 4 M NaI, pH 8.0) and precipitating with titer wells coated with an anti-PreS1 monoclonal antibody and
ethanol. DNA was sequenced by Sangon Sequencing (Shanghai, incubated for 30 min at 37 "C. The wells were washed and incu-
China) using the -96 gIII sequencing primer CCCTCATAGTTAGCG- bated with HRP-labeled anti-HBs for 30 min at 37 "C. Color was
TAACG provided by NEB. developed and measured as described above.
2.5. Peptide synthesis After the 5th panning round, a total of 39 phage clones were se-
lected and amplified as described above. As shown in Fig. 2, the
The selected peptides were synthesized as the C-terminus ami- absorbance obtained from each phage combined with the target
dated form by HD Biosciences (Shanghai, China). C-amidation was protein was significantly higher than that of the control (i.e.,
used because the C-terminal residue of the displayed sequence was BSA), and the binding efficiency was concentration-dependent
fused to the phage during panning. A synthetic peptide with a free (data not shown). Because it was hard to obtain a precisely uniform
charged carboxy terminus would introduce a negative charge, phage titer, all of the phages were assayed in the concentration
which would likely completely abolish binding; therefore, the C- range of 1012–1013; therefore, the absorbance values did not corre-
terminal carboxylates of the synthetic peptides were amidated. late with the phage binding affinity. All of the positive clones spe-
The final purity of the peptide was 98%. The peptides were dis- cifically bound to PreS1, but the higher absorbance values might
solved in PBS to obtain a 50 mM stock solution. The stock solution not be indicative of stronger binding.
was stored at !70 "C.
3.3. Sequences analysis of selected phages
2.6. Isothermal titration calorimetry (ITC)
The coding sequences of all 39 positive clones were determined,
ITC measurements were carried out at 25 "C using a VP-ITC and the corresponding peptide sequences were deduced. A total of
titration calorimeter (MicroCal, Northampton, MA). Degassed pep- seven distinct sequences were found (Table 1), and among the 39
tide solutions were added at a concentration of 1 mM into the reac- positive clones, P7 occurred, remarkably, 28 times. An interesting
tion chamber containing PreS1 at a concentration of 20 lM. To feature of these peptides was the frequent presence of histidine
account for the thermal effects of dilution and mixing, heats deter- residues, implying that histidine is a common feature required
W. Wang et al. / Biochemical and Biophysical Research Communications 412 (2011) 633–637 635
A M 1 B
Table 1
Enrichment and analysis of PreS1-specific phages by biopanning.
Abs
2.5 PreS1
BSA
2
1.5
0.5
0
c1 c3 c5 c7 c9 c11 c13 c15 c17 c19 c21 c23 c25 c27 c29 c31 c33 c35 c37 c39
Fig. 2. Binding capacity of the selected phage against PreS1. Data are expressed as means ± SD.
636 W. Wang et al. / Biochemical and Biophysical Research Communications 412 (2011) 633–637
A B
Ka
P1 7081±1693
P2 1433±542.8
P3 532.2±1030
P4 1527 ±1344
P5 3121±117
P6 6437±1342
P7 7.21×104±4.15×104
Fig. 3. ITC profiles of the binding of peptides to PreS1. (A) Ka values of seven peptides, among which the values for P7 was the highest. (B) Top: data obtained from 28
automatic injections of sequential 10 ll aliquots of a 1 mM P7 solution injected into a 20 lM PreS1 solution. Bottom: the integrated curve of enthalpy generation showing
points (squares) and the best fit (line). Plot of the heat evolved per mole of P7 added against the molar ratio of peptide to PreS1.
three histidine residues. The amino acid following the first histi-
A dine was most commonly methionine (M). In some cases, this po-
sition was occupied by amino acids containing a hydroxyl group
(threonine (T), tyrosine (Y) and serine (S)). In the position next to
the second histidine, tryptophan (W) was most frequently ob-
served. Proline was also conserved among the selected peptides,
although a preference for the basic amino acids arginine (R) was
also observed. Proline is more conformationally restricted than
other amino acids. Because its cyclically bonded structure fixes
its conformational degrees of freedom, proline-containing peptides
possess the ability to turn and reorient to produce the required
compact structure in a relatively stable manner [31].
B 120 Among the 39 positive phages, 28 (72%) contained a consensus
Abs (% of positive control)
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