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Classification of Melanoma
Classification of Melanoma
Classification of Melanoma,
Simulants and Precursors, and
Pathway Concept
DE Elder
Hospital of the University of Pennsylvania
Philadelphia, PA
Hanoi, July 2023
WHO Classification of Skin Tumours
4e, 2018
• Edited by
• David E Elder
• Daniela Massi
• Richard A Scolyer
• Rein Willemze
“The guiding principles for distinguishing taxa are genetic alterations that arise
early during progression; clinical or histologic features of the primary tumor;
characteristics of the host, such as age of onset, ethnicity, and skin type; and
the role of environmental factors such as UV radiation.”
Fourth Edition WHO “Pathway”
Classification
• Characteristics of Precursors:
• Not obligate
• Steps can be skipped
4 step progression scheme of
melanocytic tumors
Nevus
Single driver anomaly
• Epidemiology
“CSD” Melanoma is more Common in Sun-Susceptible Populations:
• Pathway I. Low CSD Melanoma/Superficial Spreading Melanoma (SSM)
• Pathway II. High CSD Melanoma/Lentigo Maligna Melanoma (LMM)
• Pathway III. Desmoplastic Melanoma
• Pathway
• End Point of Pathway
(Melanomas)
• Low Grade Precursors
• Intermediate / High
Grade Precursors
• Melanomas
• Based on:
• Epidemiology
• CSD and non CSD
• Topography
• Histopathology
• Genomics
CSD = Cumulative Solar Damage • Bastian BC, et al WGHO Classification of Skin
Tumours, In Preparation, 2023
Melanocytic Tumour Classification and the Pathway Concept of Melanoma Pathogenesis
Elder DE, Barnhill RL, Bastian BC, Cook MG, de la Fouchardière A, Gerami P, Lazar AJ, Massi D, Mihm MC Jr, Nagore E, Scolyer RA, Yun SJ, WHO 2018.
• Epidemiology
“CSD” Melanoma is more Common in Sun-Susceptible Populations:
• Pathway I. Low CSD Melanoma/Superficial Spreading Melanoma (SSM)
• Pathway II. High CSD Melanoma/Lentigo Maligna Melanoma (LMM)
• Pathway III. Desmoplastic Melanoma
• Biologically benign
• Simulants of melanoma
• May be precursors of
melanoma (low risk but
greater than in “wholly
benign” nevi).
• Have more than a single
genomic aberration
• Bastian BC, et al WHO Classification of Skin
Tumours, In Preparation, 2023
Intermediate Lesions of Tumor Progression
• Biologically benign
• May be precursors of malignant tumors – however the rate of individual lesion
progression is very low
• Morphologically intermediate – clinically atypical and histologically dysplastic –
SIMULANTS OF MELANOMA
• Genomic profile is also intermediate
• DIFFICULT TO REPRODUCIBLY DIAGNOSE – UNCERTAINTY (MPATH PROJECT)
Clark WH. Tumour progression and the nature of cancer. Br J Cancer. 1991;64:631-44
The Genetic Evolution of Melanoma from Precursor Lesions.
Shain AH, Yeh I, Kovalyshyn I, Sriharan A, Talevich E, Gagnon A, et al. The Genetic Evolution of Melanoma from
Precursor Lesions. N Engl J Med. 2015;373(20):1926-36.
Arnaud de la Fouchardiere,
Lyon, France
Reconceptualizing the current classification
Genetic anomalies can be pooled into pathways
• MAPK pathway : H/N/KRAS – A/B/CRAF – MEK1/2 – ERK
• PKC pathway activation of MAPK pathway: CYSLTR2, GNAQ, GNA11, PLCB4, PKC gene fusion
• RTK activation of MAPK and MTOR “survival” pathway : KIT, ALK , ROS, NTRK1/2/3, MET, RET
• RAS modulators: NF1 or SPRED1 mutations; RASGRF1 and RASGRF2 fusions
• RAF modulators by PKA activation: PRKAR1A inactivation by mutation / fusions
• MEK modulators: MAP3K8 mutations/ fusions
• ERK modulators: MAP3K3 by p38 pathway
• MTOR “survival” pathway regulator: PTEN
• Cell-cycle modulator: CDKN2A via p14/MDM2/TP53 and p16/CDK4/CCND1/RB
• WNT-activation: CTNNB1 and APC mutations
• Chromatin remodeling: BAP1 inactivation, ARID1A/B; ARID2…
• Epigenetic / DNA methylation : TET2; IDH1 mutation…
• Telomerase modulator: H-TERT mutation, shelterin complex
• Spliceosoma : SF3B1
• Pigmentation genes: MiTF, OCA1/2, TYR, TYRP
Melanoma in Asia
British Journal of Dermatology
(2020) 182, pp1205–1213
• Biologically benign
• Simulants of melanoma
• May be precursors of
melanoma (low risk but
greater than in “wholly
benign” nevi).
• Have more than a single
genomic aberration
• Bastian BC, et al WHO Classification of Skin
Tumours, In Preparation, 2023
Lentiginous
Low UV junctional nevus
Pathway I
Low-CSD Melanoma
Superficial Spreading Melanoma
Precursors:
Banal Acquired Nevus (junctional, compound, dermal)
BRAF V600E OR NRAS (Gain of function, (BRAF or (BRAF, MEK1, or BRAF + PRKAR1A
activated oncogenes, mutually exclusive) NRAS)+BAP1 NRAS) + (CBNN1 or PRKCA Superficial
or APC)
spreading or
“pagetoid”
melanoma
TERT (promoter mutation)
CDKN2A, TP53, PTEN (loss of function/
suppressor)
SAM Q1.
Best diagnosis for this lesion?
• Clinical Information.
• A 3 mm macular slightly variegated lesion from the back of a 37-year-old
woman.
• Reason for Consultation.
• Is this a dysplastic nevus?
• Small
• Poorly circumscribed
• Nest predominate, discrete
• Patchy lymphocytes, scant fibroplasia, numerous melanophages (clinically atypical)
• Slight/absent
cytologic atypia
• No mitoses
Best Diagnosis?
2. Junctional nevus
3. Dysplastic nevus
Answer to SAM Q1
Junctional nevus (formerly often called mild dysplasia)
- “mild dysplasia” has been over-diagnosed, has no significance as a risk
marker or as a precursor of melanoma
• In the 2018 (and 2023) WHO classification, the following are all required for a
diagnosis of a dysplastic nevus
• Size 4 mm or greater
• Architectural disorder (lentiginous proliferation, bridging nests, fibroplasia)
• Cytologic atypia, with nuclear size compared to resting basal keratinocyte
• 1-1.5x Low Grade Dysplasia
• > 1.5x High Grade Dysplasia
• Also chromatin changes and prominent nucleoli
• Elder DE, Barnhill RL, Bastian BC, Duncan LM, Massi D, Mihm MC Jr, Piepkorn M, Rabkin M, Scolyer RA. Dysplastic naevus. In Elder DE, Massi
D, Scolyer RA, Willemze R. WHO Classification of Skin Tumours. 4th ed. Lyon: IARC; 2018
Severe Dysplasia
• Simulants of Melanoma
• clinical, histological
• Potential Precursors of Melanoma
• But very low risk of progression for individual lesions
• No need to re-excise for low grade dysplasia even if on the margin
• High grade dysplasia – consider re-excision if only because diff dx may include MIS
• Risk Markers for future development of Melanoma
• Very low risk for a single lesion
• Increased risk with increasing risk factors – FH and PH of melanoma, sunburns,
freckles, Total Number of Nevi, Large Nevi, Atypical (dysplastic nevi)
“Dysplastic nevi are a subset of melanocytic nevi that are clinically atypical and
characterized histologically by architectural disorder and cytological atypia, always
involving their junctional component.” WHO, 2018.
• Intermediate Lesions of
Class I, Low SD
Melanoma
• Biologically benign
• Simulants of melanoma
• May be precursors of
melanoma (low risk but
greater than in “wholly
benign” nevi).
• Have more than a single
genomic aberration
• Bastian BC, et al WHO Classification of Skin
Tumours, In Preparation, 2023
Low UV
Pathway I Bap-1 Inactivated
Melanocytoma
Low-CSD Melanoma
Superficial Spreading Melanoma & Melanocytomas
Precursors:
Banal Acquired Nevus (junctional, compound, dermal)
BRAF V600E, NRAS (Gain (BRAF or NRAS) + BAP1 (BRAF, MEK1, or NRAS) BRAF + PRKAR1A
of function, activated loss +(CBNN1 or APC or PRKCA loss
oncogenes, mutually activating mutation) Pigmented
exclusive) Epithelioid
Melanocytoma
(PEM)
Progression to Melanoma:
CDKN2A, TP53, PTEN (loss of function/ suppressor)
TERT (promoter mutation)
Melanocytomas
• Melanocytic tumors with intermediate architectural and cytologic features
• Increased cellularity, atypia, may be a few mitoses, insufficient for melanoma
diagnosis
• Genomically, have two mutations
• e.g., BRAF Driver + BAP-1 loss OR Beta catenin activation OR PRKAR1a loss
• May appear as a component of a combined nevus
• Increased risk of progression to malignant variants, though still low
• Should be completely excised.
• Classification as Benign or Malignant depends on traditional
clinicopathologic attributes:
• History of change, Morphology, Atypia, Mitoses, Ulceration, Necrosis, etc.
Diagnosis of malignancy (if present) is based primarily on
traditional histopathologic attributes
• Ulceration, High cellularity with sheet-like growth of cells,
Severe uniform cytologic atypia, High mitotic rate, etc.
• Clinical behavior / follow-up!
• PRAME, GEP, or FISH could be useful, also possibly CGH
DPN (combined)
New Case
27 y.o. woman with a 3-month history of a
tumor of the mandible, invading bone and
displacing teeth
Absent staining for
p16
Mitotic Rate of
6 per sq. mm
Superficial Spreading
Melanoma
RGP:-
• Asymmetry
• Border irregularity
• Color variegation
• Diameter > 4 mm
• Discrete border VGP – (bottom middle and right) - more symmetrical, color may be
uniform, border may be sharply defined
Viros A, et al. Improving melanoma
classification by integrating genetic and
morphologic features. Plos Med.
2008;5(6):e120
SSM v LMM
• High pigment
• High scatter
• High nesting
• Good circumscription
• Thickened epidermis
• Larger cell size
• Similar nuclear size
• Epithelioid > spindle
cells
• Lower CSD
High UV Viros A, et al. Improving melanoma
classification by integrating genetic and
Pathway II morphologic features. Plos Med.
2008;5(6):e120
High-CSD Melanoma (LMM)
SSM v LMM
Severe CSD (exposed skin, outdoor work) • Low pigment
• Low scatter
High Tumor Mutation Burden (TMB) • Low nesting
UV signature mutations • Poor circumscription
• Thinned epidermis
Lentigo maligna melanoma in situ before
invasive melanoma, may progress to vertical • Smaller cell size
growth phase • Similar nuclear size
Lentigo Maligna Melanoma: Continuous basal • Spindle > epithelioid
“lentiginous” proliferation of uniformly cells
atypical melanocytes. • HIGH CSD
non-V600E
NRAS, BRAF , KIT, (gain of function,
activated oncogenes, mutually exclusive)
NF1 (Loss of function)
Wiesner
LesionsT,that
He J, may
Yelensky R, Esteve-Puig
look R, Botton
like a Spitz T, Yeh I,but
Melanoma et al.
Kinase fusions are frequent in Spitz tumours and spitzoid
lack the defining genomic variations (and may
melanomas. Nature communications. 2014;5:3116
have BRAFV600E or NRAS mutations or be WT) are
termed “Spitzoid
VandenBoom Melanoma”
T, Quan VL, and EM,
Zhang B, Garfield likely have
Kong a
BY, Isales
MC, et al.prognosis
worse Genomic Fusions
than intrue
Pigmented Spindle Cell Nevus of
Spitz melanomas,
Reed. The American journal of surgical pathology.
which are very rare …
2018;42(8):1042-51
Atypical Spitz Tumor
Atypical melanocytic
proliferation
Melanoma in situ
• Moon KR, Choi YD, Kim JM, Jin S, Shin MH, Shim HJ, et al. Genetic Alterations in Primary
Acral Melanoma and Acral Melanocytic Nevus in Korea: Common Mutated Genes Show
Distinct Cytomorphological Features. J Invest Dermatol. 2018;138(4):933-45.
• Hayward NK, Wilmott JS, Waddell N, Johansson PA, Field MA, Nones K, et al. Whole-
genome landscapes of major melanoma subtypes. Nature. 2017;545(7653):175-80.
Pathway VI
No UV
Mucosal Melanoma
Melanosis
Atypical melanosis
IAMPUS/ SAMPUS
Mucosal lentiginous
melanoma
KIT, NRAS, KRAS, or BRAF
Substitutions, insertions,
deletions and structural
variants
Hayward NK, Wilmott JS, Waddell N, Johansson PA, Field MA, Nones K, et al. Whole-genome
landscapes of major melanoma subtypes. Nature. 2017;545(7653):175-80.
Diagnosis of malignancy is based on traditional histopathologic
attributes
• Asymmetry, Invasion, Tissue Destruction, Ulceration,
Necrosis, Pleomorphism, High cellularity with sheet-like
growth of cells, Severe uniform cytologic atypia, High
mitotic rate, etc.
Pathway VII
No/Variable UV
Nodular proliferation in CN
? MIS in CN
Melanoma in CN
BRAF fusions
Probably
Diagnosisabout the sameisincidence
of malignancy in all
based primarily
ethnicities
on traditional histopathologic attributes:
Genetic• profile
Ulceration, of coexistent GNAQ with
High cellularity or GNA11
mutations with BAP1
sheet-like or SF3B1
growth mutations
of cells, Severe can
aid the histopathological
uniform cytologicdiagnosis atypia, High and
distinguish blue rate,
mitotic nevus-like
etc. melanoma from
conventional epidermal-derived melanomas.”
• PRAME,
Griewank GEP,
KG, Muller H, Jackett or FISH could
LA, Emberger M, Moller I,be
van de Nes
JA, et al (Scolyer, Schadendorf). SF3B1 and BAP1 mutations in blue
useful
nevus-like melanoma. Modern pathology 2017;30:928-39.
Diagnosis of malignancy is based mostly on traditional
histopathologic attributes:
• Ulceration, High cellularity with sheet-like growth of cells,
Severe uniform cytologic atypia, High mitotic rate, etc.
• BAP1 inactivation/loss, Loss of Chromosome 3 by FISH
• PRAME, GEP, or FISH could be useful
Nodular Melanoma - Clinical Features
• Detectable RGP is absent by definition
• Tumorigenic melanoma without an adjacent non-tumorigenic component
• Short-lived RGP may be obliterated by the developing tumor.
• Likely to occur in all pathways
• Prognosis is similar
to other melanomas
of same microstage
• However small diameter lesions
can be “thick” dangerous melanomas
Nodular melanoma
Dermal nevus adjacent to
nodular melanoma -
indicative of tumor
progression, renders
metastasis unlikely.
New (Revised) Classification of Melanoma
• Integrates Epidemiology, Genomic, Clinical and
Histopathologic Features
• Genomic Attributes are Relevant for Classification and
Therapy for Metastatic Disease
• Of Little Use in Diagnosis of Malignant versus Benign
Neoplasm
• Progression Genes can Assist in this Task:
• Ki-67 – proliferation
• HMB45 – Maturation
• , p16 and other genes
- “progression from bad to worse”
Acknowledgements
Chapter Authors (Melanoma Classification
David Elder
Raymond Barnhill
Boris Bastian
Martin Cook
Arnaud de la Fouchardière
Pedram Gerami
Alexander Lazar
Daniela Massi
Martin Mihm
Eduardo Nagore
Richard Scolyer
Sook Jung Yun
International Melanoma
Pathology Study Group
> 150 Authors (Blue Book 4e)
WHO
Ian Cree
Hiroko Ohgawa
• 1.
References
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• 2. Clark WHJ. A classification of malignant melanoma in man correlated with histogenesis and biologic behavior. In: Montagna W, Hu F, editors. Advances in the Biology of the Skin Volume VIII. New York: Pergamon Press; 1967. p. 621-47.
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• 10. Viros A, Fridlyand J, Bauer J, Lasithiotakis K, Garbe C, Pinkel D, et al. Improving melanoma classification by integrating genetic and morphologic features. Plos Med. 2008;5(6):e120.
• 11. Eroglu Z, Zaretsky JM, Hu-Lieskovan S, Kim DW, Algazi A, Johnson DB, et al. High response rate to PD-1 blockade in desmoplastic melanomas. Nature. 2018;553(7688):347-50.
• 12. Wiesner T, He J, Yelensky R, Esteve-Puig R, Botton T, Yeh I, et al. Kinase fusions are frequent in Spitz tumours and spitzoid melanomas. Nature communications. 2014;5:3116.
• 13. VandenBoom T, Quan VL, Zhang B, Garfield EM, Kong BY, Isales MC, et al. Genomic Fusions in Pigmented Spindle Cell Nevus of Reed. The American journal of surgical pathology. 2018;42(8):1042-51.
• 14. Moon KR, Choi YD, Kim JM, Jin S, Shin MH, Shim HJ, et al. Genetic Alterations in Primary Acral Melanoma and Acral Melanocytic Nevus in Korea: Common Mutated Genes Show Distinct Cytomorphological Features. J Invest Dermatol. 2018;138(4):933-45.
• 15. Hayward NK, Wilmott JS, Waddell N, Johansson PA, Field MA, Nones K, et al. Whole-genome landscapes of major melanoma subtypes. Nature. 2017;545(7653):175-80.
• 16. Bastian BC, Xiong J, Frieden IJ, Williams ML, Chou P, Busam K, et al. Genetic changes in neoplasms arising in congenital melanocytic nevi : differences between nodular proliferations and melanomas. Am J Pathol. 2002;161(4):1163-9.
• 17. Griewank KG, Muller H, Jackett LA, Emberger M, Moller I, van de Nes JA, et al. SF3B1 and BAP1 mutations in blue nevus-like melanoma. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc. 2017;30(7):928-39.
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• 19. Shain AH, Yeh I, Kovalyshyn I, Sriharan A, Talevich E, Gagnon A, et al. The Genetic Evolution of Melanoma from Precursor Lesions. N Engl J Med. 2015;373(20):1926-36.
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• 22. Clarke LE, Flake DD, Busam K, Cockerell C, Helm K, McNiff J, et al. An independent validation of a gene expression signature to differentiate malignant melanoma from benign melanocytic nevi. Cancer. 2017;123(4):617-28.
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