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INTRODUCTION
Cystic fibrosis (CF) is a multisystem disorder caused by pathogenic variants in the CFTR gene
(CF transmembrane conductance regulator) [1,2]. (See "Cystic fibrosis: Genetics and
pathogenesis".)
Pulmonary disease remains the leading cause of morbidity and mortality in people with CF
[3], and pulmonary exacerbations are associated with accelerated loss of lung function,
decreased quality of life, and increased mortality [4-7]. The causes of pulmonary
exacerbations are multifactorial, with infection playing an important but somewhat ill-
defined role [8]. The development of treatments that reduce the frequency and severity of
pulmonary exacerbations is an important contributor to the marked improvements in
survival of people with CF ( figure 1).
Considerable variation exists in how patients with CF are treated for pulmonary
exacerbations [9-12], despite the availability of clinical guidelines [13-16]. The
recommendations in this topic review generally adhere to published guidelines and/or
conform to common clinical practices.
Definition — The clinical course of most patients with CF is punctuated by acute episodes of
worsening pulmonary status that are referred to as "pulmonary exacerbations" [17,18]. The
CF field has not reached a consensus definition of pulmonary exacerbation for the purposes
of patient care or clinical research [19,20]. In many clinical trials, exacerbations were defined
solely on the criterion that a participant's CF clinician initiated antibiotic treatment for an
acute worsening of clinical status [10,21]. Other trials have defined exacerbations based on
specific symptoms and signs, but these criteria do not perform well at identifying those
patients whose CF clinicians choose to treat with antibiotics [19,20]. Part of the difficulty may
be that pulmonary exacerbations are not a single entity but have differing etiologies,
inflammatory profiles, and clinical outcomes [22,23].
● Symptoms:
● Other – Chest radiographs may not show significant changes over baseline and are not
routinely obtained for people with mild symptoms. A decrease in arterial hemoglobin
oxygen saturation may occur but is not required to diagnose an exacerbation.
There are no absolute thresholds that determine a pulmonary exacerbation. For example, an
individual who is asymptomatic at baseline is typically considered to have a pulmonary
exacerbation if there is a new cough with sputum production, fatigue, and decreased
appetite, even though FEV1 may remain in normal range [28].
Severity grading — CF clinicians routinely distinguish mild from severe exacerbations when
planning treatment [9,29], although there are no protocols for severity grading [30]. A
common approach is to consider the degree of worsening from baseline of each of the
patient's signs and symptoms and arrive at a global assessment of the extent of decline. As
examples:
Incidence — In 2022, the Cystic Fibrosis Foundation Patient Registry reported that 10
percent of children and 15 percent of adults had at least one pulmonary exacerbation severe
enough to be treated with intravenous antibiotics, down from 23 percent of children and 43
percent of adults in 2018 [3]. A major driver of the decreased incidence is the availability of
The risk of pulmonary exacerbation increases with age, female sex, declining lung function,
CF-related diabetes, and cirrhosis [32]. A strong predictor of developing a pulmonary
exacerbation is having had one or more exacerbations during the previous year. Other risk
factors include nonadherence to chronic CF treatments and depression [33,34].
PATHOGENESIS
Viruses — Viruses are detected in many cases of acute exacerbations in children with CF, and
there is some evidence that they are important contributors to declining pulmonary function.
Among children with a pulmonary exacerbation during the winter months, viruses were
detected by a molecular method in 34 to 60 percent [35,36]. The pathogens were
coxsackie/echovirus, rhinovirus/enterovirus, respiratory syncytial virus, parainfluenza,
adenovirus, and influenza. Among adults with pulmonary exacerbations, viruses were
detected in 10 to 25 percent, especially rhinovirus, enterovirus, respiratory syncytial virus,
parainfluenza virus, coronaviruses, and influenza [37-39].
Bacteria — Most people with CF have chronic bacterial infection of the airways, as
demonstrated by sputum cultures; the prevalence of each bacterial type varies with the age
of the patient ( figure 2). (See "Cystic fibrosis: Antibiotic therapy for chronic pulmonary
infection", section on 'Pathogens'.)
● Pseudomonas aeruginosa
● Staphylococcus aureus (methicillin-sensitive or methicillin-resistant species)
● Burkholderia cepacia complex
● Nontypeable Haemophilus influenzae
● Stenotrophomonas maltophilia
● Achromobacter species
● Nontuberculous mycobacteria
Anaerobic bacteria are frequently identified, but their role in pulmonary exacerbations is
uncertain [40-42]. Nonculture-based assays to identify bacteria have shown that the number
of species present in respiratory secretions from CF patients is often considerably higher
than what is revealed by culture-based methods, with substantial variation among patients
[43].
SITE OF CARE
antibiotics and close adherence to airway clearance therapies (inhaled agents and chest
physiotherapy), with provisions for rest and good nutrition [13]. Children require
greater assistance than adults to accomplish these goals, and adult supervision is
needed even for teenagers. In considering home treatment for children, one must
consider the impact of lost work hours, the number of other children in the household,
the number and competence of available adult caregivers, and family stress before
deciding whether home treatment is preferable to hospitalization.
Concern over hospital costs as well as the preference of many patients have
encouraged home treatment with intravenous antibiotics for pulmonary exacerbations
in CF. Although studies vary in their conclusions, a preponderance of evidence suggests
that in-hospital treatment may be more effective. This was shown in a large prospective
study of standardized care for pulmonary exacerbations (STOP2 study [21]), in which 33
percent of participants received treatment exclusively in hospital, 21 percent exclusively
at home, and 46 percent initiated in hospital and completed at home [49]. The mean
increase in percent predicted forced expiratory volume in one second (FEV1) of those
treated only in hospital (8.0, 95% CI 6.7-9.4) was significantly better than those treated
only at home (5.0, 95% CI 3.5-6.5) or at both locations (7.0, 95% CI 5.9-8.1). Because the
participants were not randomly assigned to treatment location, sophisticated statistical
analyses were used to adjust for assignment bias in these studies, but residual bias
cannot be excluded. Similar conclusions were reached in another registry-based study
of 4497 pulmonary exacerbations, which found that recovery of FEV1 to ≥90 percent of
baseline level was 9.1 percent more likely when all treatment was delivered in-hospital
compared with treatment delivered entirely at home [50]. By contrast, some earlier and
smaller studies detected no significant differences in outcomes for patients treated
with intravenous antibiotics at home, including one very small randomized trial (31
exacerbations, 17 participants) [51,52] and an observational study (1535 participants)
[53].
Intensive care unit treatment — Indications for intensive care unit (ICU) care include:
Outcomes for adults and children with CF who require ICU care were previously reported to
be uniformly poor [54] but have fortunately improved [55,56]. Advanced CF lung disease
should not be considered a contraindication to mechanical ventilation or ICU care in general,
regardless of the patient's lung transplant status [57]. (See "Cystic fibrosis: Management of
advanced lung disease", section on 'Intensive care unit treatment'.)
An episode of respiratory failure should prompt discussion of end-of-life care, quality of life,
and possible indications for lung transplantation. Ideally, these discussions should occur
when a patient's clinical trajectory suggests increasing risk for respiratory failure but well
before ICU care is needed. (See "Cystic fibrosis: Management of advanced lung disease",
section on 'Lung transplant evaluation'.)
TREATMENT
The goals of treatment are to return the patient's symptoms to baseline and recover any lost
forced expiratory volume in one second (FEV1), which are not always possible. (See
'Prognosis' below.)
Periodic elective hospitalization for preventive therapy (referred to as "clean outs") is not
recommended, as reviewed separately. (See "Cystic fibrosis: Antibiotic therapy for chronic
pulmonary infection", section on 'Periodic hospitalizations'.)
● Airway clearance therapy, with inhaled agents (eg, inhaled dornase alfa or hypertonic
saline) and chest physiotherapy. (See "Cystic fibrosis: Overview of the treatment of lung
disease", section on 'Airway clearance therapies'.)
● Ensuring glucose control for those with CF-related diabetes. (See "Cystic fibrosis-related
diabetes mellitus", section on 'Treatment'.)
● Exercise, as tolerated. (See "Cystic fibrosis: Overview of the treatment of lung disease",
section on 'Chest physiotherapy'.)
Many patients have poor adherence to these treatments when they are at their baseline
status and require encouragement to increase their use during exacerbations [33]. If
possible, the frequency of airway clearance treatments should be increased during
exacerbations beyond what is prescribed as part of the chronic therapy regimen (eg,
increasing to four times per day), as recommended by Cystic Fibrosis Foundation guidelines
[13].
We use these same indications for bronchodilators during baseline health. (See "Cystic
fibrosis: Overview of the treatment of lung disease", section on 'Bronchodilators'.)
Other CF clinicians administer a brief course of glucocorticoids for all patients with
exacerbations, regardless of the presence of asthma-like symptoms. This strategy is based
on the assumption that acute exacerbations in CF are similar to acute exacerbations of
chronic obstructive pulmonary disease (COPD) in adults (see "COPD exacerbations:
Management"). However, we do not use this approach, because the few available studies
suggest that systemic glucocorticoids do not improve pulmonary outcomes in people with CF
and may contribute to dysglycemia [61-63].
Antiviral agents
● Influenza – Antiviral treatment is indicated for people with CF with known or suspected
influenza because they are at high risk for severe or complicated disease. Antiviral
treatment should be initiated regardless of the duration of symptoms or severity of
initial illness, although it is likely to have the greatest benefit if it is initiated within 48
hours after symptom onset. Indications and regimens are discussed separately. (See
"Seasonal influenza in children: Management", section on 'Antiviral therapy' and
"Seasonal influenza in nonpregnant adults: Treatment".)
Annual vaccination against viral influenza is recommended for all CF patients older than
six months of age, using an inactivated vaccine delivered by injection. Vaccination is
highly preferred over the use of pre- or postexposure chemoprophylaxis [64]. (See
"Cystic fibrosis: Overview of the treatment of lung disease", section on 'Prevention of
infection'.)
Respiratory support
The possibility that noninvasive ventilation might enhance airway clearance therapy
was evaluated in a randomized study of 38 participants admitted for treatment of a
https://www.uptodate.com/contents/cystic-fibrosis-management-of-pulmonary-exacerbations/print?search=ciprofloxacina en fibrosis quistica&s… 10/31
20/1/24, 22:55 Cystic fibrosis: Management of pulmonary exacerbations - UpToDate
● Invasive ventilation – CF patients with acute respiratory failure are candidates for
endotracheal intubation and mechanical ventilation, if noninvasive ventilation fails and
if the intervention is congruent with the patient's goals of care. The decisions are
consistent with guidelines used for people with COPD and acute respiratory failure.
(See "Invasive mechanical ventilation in acute respiratory failure complicating chronic
obstructive pulmonary disease".)
Input from the appropriate transplant center should be sought to determine how
intubation with mechanical ventilation will affect the patient's listing for
transplantation. (See "Cystic fibrosis: Management of advanced lung disease".)
Individuals who require invasive ventilation should also be considered for early
institution of ECMO, if this is congruent with the patient's goals of care and with input
from the pertinent transplant center, as outlined in Cystic Fibrosis Foundation
guidelines for advanced CF lung disease [57]. (See "Extracorporeal life support in adults
in the intensive care unit: Overview".)
PROGNOSIS
Following a pulmonary exacerbation, recovery of the forced expiratory volume in one second
(FEV1) decrement is often incomplete. With each exacerbation, between 12 and 35 percent of
patients fail to recover to at least 90 percent of their baseline FEV1 [10,69,70]. Quality of life
also declines with increasing numbers of pulmonary exacerbations [6]. Following treatment
of a pulmonary exacerbation, symptomatic improvements are not well correlated with FEV1
recovery [71]. As an example, in a prospective study of 58 adults with CF, 23 percent of
pulmonary exacerbations were associated with ongoing symptoms after 14 days of
antibiotics, with further symptomatic improvement when treatment was extended to 21 days
[72]. However, continuation of antibiotic treatment was not associated with further
improvement in FEV1 or body mass index. These observations are relevant to decisions about
duration of treatment. (See "Cystic fibrosis: Antibiotic therapy for pulmonary exacerbations",
section on 'Duration of treatment'.)
Links to society and government-sponsored guidelines from selected countries and regions
around the world are provided separately. (See "Society guideline links: Cystic fibrosis".)
• Viruses – Viral pathogens frequently play a role in initiating exacerbations and may
be important contributors to declining pulmonary function. Influenza is an
important vaccine-preventable pathogen. (See 'Viruses' above.)
● Treatment
The role for inhaled antibiotics during pulmonary exacerbations is uncertain. (See
"Cystic fibrosis: Antibiotic therapy for pulmonary exacerbations", section on
'Managing the chronically prescribed antibiotics'.)
• Antiviral agents – Antiviral treatment is indicated for people with CF with known or
suspected influenza because they are at high risk for severe or complicated disease.
Indications and regimens are discussed separately. (See "Seasonal influenza in
children: Management", section on 'Antiviral therapy' and "Seasonal influenza in
nonpregnant adults: Treatment".)
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Topic 110933 Version 35.0
GRAPHICS
This chart depicts the birth year on the x-axis and median predicted survival for that birth cohort on
the y-axis. The median predicted survival for a given birth year is the age at which one-half of the
those born that year are predicted to survive beyond, given the age distribution of deaths that
occurred during that specific year and assuming no future changes in mortality rate. Statistics from
1940 to 1978 are collected from Davis et al [1] . Statistics from 1990 to 2022 are collected from the
Cystic Fibrosis Foundation Patient Registry [2] .
Data from:
1. Davis PB, Drumm M, Konstan MW. Cystic fibrosis. Am J Respir Crit Care Med 1996; 154:1229.
2. 2022 Patient Registry Annual Data Report. Cystic Fibrosis Foundation. https://www.cff.org/medical-
professionals/patient-registry (Accessed on November 8, 2023).
The graph shows the proportion of individuals in various age groups who had positive cultures for
each of these bacterial species during 2019. We did not include data from the 2020 and 2021 Cystic
Fibrosis Foundation Patient Registry reports, which may be misleading because many fewer cultures
were collected during that period due to the COVID-19 pandemic.
Reproduced with permission from: Cystic Fibrosis Foundation Patient Registry: 2019 Annual Data Report, Bethesda, MD.
Copyright © 2020 Cystic Fibrosis Foundation.
* For NTM, this represents the percentage of patients with 1 or more mycobacterial species isolated
among those who had at least 1 mycobacterial culture performed during 2022.
Data from: 2022 Patient Registry Annual Data Report. Cystic Fibrosis Foundation. https://www.cff.org/medical-
professionals/patient-registry (Accessed January 8, 2024).
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The table contains recommended choices of antibiotics based on the type of bacteria isolated. The
selection should be modified based on results of sensitivity testing and renal function. The doses
given here are typical for patients with cystic fibrosis. Higher and/or more frequent dosing of some
antibiotics is often required for cystic fibrosis patients as compared with patients without cystic
fibrosis, and a wider range of dose requirements is to be expected. Note that these dosing
recommendations do not apply to cystic fibrosis patients who have undergone lung transplantation.
For most of these antibiotics, dosing reflects recommendations from a comprehensive review of
antipseudomonal antibiotics in cystic fibrosis [4] . For a few of the antibiotics (piperacillin-tazobactam,
ticarcillin-clavulanate, and ceftazidime), the review recommends much higher doses for cystic fibrosis
patients than are used for patients without cystic fibrosis. These are based primarily on
pharmacokinetic and pharmacodynamic considerations, but clinical trial data for these very high
doses are lacking. Therefore, we suggest intermediate doses for these drugs, as shown in the table
above. Many clinicians are prescribing beta-lactam antibiotics to be administered by prolonged or
continuous infusion, based on a strong theoretical basis and pharmacokinetic analysis of drug levels
in patients with cystic fibrosis.
MSSA: methicillin-sensitive S. aureus; AUC: area under the time-concentration curve; MIC: minimum
inhibitory concentration.
* The dose given to children generally should not exceed the dose for adults.
¶ The severity of an exacerbation is typically based upon changes in clinical symptoms and pulmonary
function tests compared with the patient's own baseline.
Δ For trimethoprim-sulfamethoxazole, dosing for patients with cystic fibrosis may need to be higher
than that recommended for non-cystic fibrosis patients (refer to the UpToDate topic on treatment of
acute pulmonary exacerbations in cystic fibrosis).
◊ For vancomycin, some clinicians target a lower serum trough level of 10 to 15 mg/mL since this
reduces the risk for nephrotoxicity, and pharmacokinetic/pharmacodynamic studies showed that this
approach achieves the desired target of AUC/MIC ≥400 in children and adolescents [5] .
¥ For piperacillin-tazobactam, ticarcillin-clavulanate, and ceftazidime, higher doses than those shown
may be considered on a case-by-case basis to optimize pharmacodynamic targets in patients with
multidrug-resistant pathogens and poor clinical response to initial treatment [4] . Many clinicians are
prescribing beta-lactam antibiotics to be administered by prolonged or continuous infusion, based on
a strong theoretical basis and pharmacokinetic analysis of drug levels. Ticarcillin-clavulanate is no
longer available in North America, Australia, the United Kingdom, and most of Europe.
‡ For treatment of P. aeruginosa without MSSA, piperacillin without tazobactam or ticarcillin without
clavulanate can be used where available (in combination with ciprofloxacin, an aminoglycoside, or
colistin, depending on reported susceptibilities).
† Of piperacillin component. Doses >600 mg/kg/day may be considered on a case-by-case basis, but
increased risk of toxicity is expected, including serum sickness, anemias, and bone marrow
suppression.
** Of ticarcillin component.
¶¶ Monitor aminoglycoside blood levels and creatinine to ensure efficacy and avoid toxicity. The dose
and frequency from a previous course of treatment may be used initially if serum concentrations were
in the target range and if creatinine clearance is not substantially changed, but drug levels should still
be monitored.
ΔΔ For patients with total body weight greater than 120% of ideal body weight, initial dose selection
should be based on adjusted body weight or dosing weight. A calculator for ideal body weight and
dosing weight in adults is available in UpToDate.
◊◊ If the patient is overweight, the initial dose of colistin should be based on ideal body weight. A
calculator for ideal body weight in adults is available in UpToDate.
§§ For an explanation of our recommended colistin dosing for people with cystic fibrosis, refer to the
UpToDate content on antibiotic therapy in cystic fibrosis. Conversions: 1 mg colistin-base activity
(CBA; United States product) = 30,000 international units of colistimethate sodium (CMS; European
Union product).
References:
1. Epps QJ, Epps KL, Young DC, et al. State of the art in cystic fibrosis pharmacology optimization of antimicrobials in the
treatment of cystic fibrosis pulmonary exacerbations: III. Executive summary. Pediatr Pulmonol 2021; 56:1825.
2. LeCleir LK, Pettit RS. Piperacillin-tazobactam versus cefepime incidence of acute kidney injury in combination with
vancomycin and tobramycin in pediatric cystic fibrosis patients. Pediatr Pulmonol 2017; 52:1000.
3. Hiraki Y, Tsuji Y, Matsumoto K, et al. Influence of linezolid clearance on the induction of thrombocytopenia and
reduction of hemoglobin. Am J Med Sci 2011; 342:456.
4. Zobell JT, Young DC, Waters CD, et al. Optimization of anti-pseudomonal antibiotics for cystic fibrosis pulmonary
exacerbations: VI. Executive Summary. Pediatr Pulmonol 2013; 48:525.
Many but not all of the dosing recommendations in this table are reflected in the following source: Zobell JT, Young DC, Waters
CD, et al. Optimization of anti-pseudomonal antibiotics for cystic fibrosis pulmonary exacerbations: VI. Executive Summary.
Pediatr Pulmonol 2013; 48:525.
Contributor Disclosures
Richard H Simon, MD No relevant financial relationship(s) with ineligible companies to
disclose. James F Chmiel, MD, MPH Grant/Research/Clinical Trial Support: Cystic Fibrosis Foundation
[Cystic fibrosis]; National Institutes of Health [Asthma; cystic fibrosis]; Vertex [Cystic fibrosis].
Consultant/Advisory Boards: Cystic Fibrosis Foundation [Cystic fibrosis]; Microbion [Cystic fibrosis];
Phylaxis [Cystic fibrosis]. Other Financial Interest: American Board of Pediatrics [Honorarium received
for service on credentialing committee]; American Thoracic Society [Course Director for Fellows Track
Symposium]; Cystic Fibrosis Foundation [Honorarium received for service on clinical research
committee]. All of the relevant financial relationships listed have been mitigated. Alison G Hoppin,
MD No relevant financial relationship(s) with ineligible companies to disclose.
Contributor disclosures are reviewed for conflicts of interest by the editorial group. When found, these
are addressed by vetting through a multi-level review process, and through requirements for
references to be provided to support the content. Appropriately referenced content is required of all
authors and must conform to UpToDate standards of evidence.