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Many eye diseases are affecting the people around the globe. Cataract is one of the
leading eye disease caused by the opacity of lens. It ultimately leads to the blindness.
Globally around 1.3 billion people are visually impaired out of that 20 million are blind
due to cataract. It is responsible for 51% of total blindness in the world. The present
study was designed for population based assessment of age related cataract among the
people of District Mansehra. This study was aimed for assessment of risk factors
responsible for cataract moreover to carry out the molecular study of CRYBB1 gene in
order to search if there is any mutation as it is reported widely. Data was collected
from the patients that visit the ophthalmologist for the treatment of cataract. Data from
volunteer patients were collected after the diagnosis of cataract, using a specially
designed questionnaire for this study. Later on collected data was analyzed on SPSS to
find out potential risk factors responsible for cataract. For DNA based analysis of ARC,
blood samples from 35 patients and 20 normal individuals were collected and DNA
extraction was carried out by phenol chloroform method. DNA of good quality was
obtained and quality and quantity of DNA was verified on 1% agrose gel
electrophoresis. Then it was used as template for PCR amplification. The blood
samples were collected from district Mansehra. The result of risk factors shows that
women were affected more due to Age Related Cataract (ARC) as compare to men.
While age group 3 i.e 66-75 years were at higher risk of ARC as compare to other age
groups. PCR amplification of CRYBB1 gene of exon 6 was performed by using specific
ix
primers. The results were verified through sequencing. The nucleotide analysis of
sequences was compared with references sequences taken from NCBI bank. MUSCLE
and Bioedit soft ware’s were used to analyze the results. In the analyzed samples no
mutations were detected in CRYBB1 gene for exon 6. It can be concluded that the risk
of cataract can be reduced by avoiding from the modifiable risk factors like exposure to
UV radiations, reducing the use of steroids and keeping away from smoke. While for
molecular study exon 6 of targeted gene CRYBB1 is not playing its role in the studied
population. Probably there is another exon of same gene or another gene is responsible
for causing cataract in the studied population. By selecting big sample size and
screening more genes, may help to know exact reason of cataract in the study area.
Chapter 1
INTRODUCTION
Eye diseases are one of the important health problems globally. When an
called visual impairment. It is a major health problem because it affects all the
activities of daily life. The most common causes of vision loss are cataract,
refractive errors and glaucoma. Cataract is the major cause of blindness which
accounts for 51% of total blindness globally. Vision disorders affect people by
reducing their visual acuity and color vision. More than 161 million people in the
world are visually impaired, of which 37 million are blind. Vision disorders
The eye diseases are frequently varying from different regions and countries and
affecting the quality of life of all groups of ages (Moschos et al., 2014). Cataract
has different types which affect the people of all ages and geography. Congenital
cataract affects the children mostly while age related cataract effects the elderly.
Cataract is the opacity of the lens. The term cataract is derived from Greek word
which means” running water”. The cataract develops slowly. It may affect one
eye or often both eyes. The lens is made of mostly water and protein. The protein
is arranged in a particular way that maintains the lens clarity and let the light
pass through it. But some of the protein may clump, as the person ages and small
area of the lens starts to cloud. This is a cataract. Eventually the cataract becomes
more and more cloudy and grows larger making it difficult to see. Diabetes and
smoking contribute too. Mostly age-related cataracts develop due to protein
portion of the lens. You may not early notice any changes in your vision.
Cataracts tend to grow slowly, so vision gets worse gradually. Over time, the
cloudy area in the lens may get prolonged, and the size of cataract may increases.
Seeing may become more difficult. Your vision may get duller or blurrier. At the
anterior surface on the lens is present single layer of epithelial cells. This layer
(Moschos et al., 2014). The most important causes of age related cataract are age,
gender, diabetes, UV exposure, high B.P, steroid use, smoking eye injury or
inflammation. The risk factors also depend upon once daily life activities. The
common signs and symptoms of cataract include blurred vision or cloudy vision,
2015).
Figure 1.1 The picture shows the difference between normal and early stage
cataract eye.
As the person ages, experiences different changes in eye structure. The strength
of eye muscles decreases as with the age. The muscles of eyelid become weaker
with age and also reduce shape of the lens and the person is unable to see the
nearer objects. Aging not only affect the structure and function of the eye but also
destroy functioning of the structure of central nervous system that helps the
visual perceptions and daily activities of vision, perhaps the major age related
Figure 1.2 Different age related eye diseases in different parts of eyes.
people are bilaterally blind. About 79 million people will be blind by 2020,
2014).
Globally as at 2010, it was estimated that cataract was responsible for fifty one %
of world blindness, about 19.9 million human with sixty % of people visually
impaired and eighty two % of all blind being fifty years old and older. The
concept of ARC is that cataract is the heritable cause of visual impairment after
uncorrected refractive errors. The percentage of which was 33% earlier and 43 %
The prevalence of cataract is more in Punjab then other provinces. About 225,000
men and about 345,000 women are affected due to cataract blindness in Pakistan.
Women’s are at higher risk of cataract in the country. In KPK the total prevalence
Types of Cataract
There are three major age related cataract types i.e. cortical cataract, nuclear
Nuclear Cataract
Nuclear cataract is associated with increases of the age and is the most common
opacity leads to dense lens and the person may complain in gradual reduction of
vision acuity and changes in color perception. The lens becomes more and denser
with age. The increase colouration is due to protein aggregation in the nuclear
visual impairment and dull colour perception. When cataract matures with age
Cortical Cataract
This type of cataract tends to occur more in person with diabetes. It is called
cortical cataract because it occur in the cortex of lens. These are whitish wedge
shaped opacities appear on the edge of lens cortex. Studies about cortical cataract
suggest that cortical opacities can induce hyperopic shifts and a significant
astigmatic shifts .With this type of cataract the most frequent symptom is
experiencing problem with glare. The changes can often have seen in the eye ball
accumulation of pink staining esinophilic fluid between cortical fibers. This fluid
They form on the back side of the lens. This type of cataract is more common in
people who have been taking oral steroid drugs. Near vision is more likely to be
affected than long vision. It is called sub capsular because it from beneath the
lens capsule. The early changes first appear as fine granules in the posterior sub
capsular area of the lens. Although posterior sub capsular cataract can occur
electric shock’s tends to occur in younger patients and progress more quickly
is considered to be due to multi factorial diseases. Major risk factors for cataract
are:
Age
Aging is one of the important factors responsible for cataract .it affects the people
above 50 mostly. Cataract become more dense and severe with age and it is also
responsible for world blindness. With age lens protein starts to aggregate in
more amounts and lens becomes cloudier and person faces difficulty in vision or
blurred vision. More than90% of people aged 75 -85 have age related changes
(Gupta et at., 2014).
Gender
Studies show that women are at higher risk of lens opacities then men due to
estrogen has effect on lens therefore plays important role in cataract formation. A
higher risk of cortical cataract may explain the 10-20 % excess risk of cataract
Hypertension
High blood pressure increases with age so it affects the structure of eye and
function. Optic nerves face many structural changes as a result of high blood
pressure (Soji et at., 2014). Studies have shown that high B.P is associated with
age related vision impairment. Because structure and function of eye undergo
Diabetes
Diabetes have close relation with cataract formation .diabetic patient are at
higher risk of cataract formation i.e 2-5 time more frequent in person with
diabetes. Diabetic patient tend to develop cataract at an early age and may be
more prone to develop posterior sub capsular cataract (Gupta et al., 2014).Control
of blood glucose level can lower the risk of diabetic retinopathy. The physiology
and morphology of eye changes in person with diabetes. The diabetic people are
at higher risk of cortical cataract (Javaadi et al., 2008). The percentage of diabetes
is 46.6 % for patients of nuclear cataract and 15.2 % for cortical cataract and 14.2
% for sub capsular cataract .The eye lens take its nutrients from aqueous humour
, fluid filling front portion off eye .Aqueous humors provide oxygen and glucose
when have no good control over glucose level. Sugar level rise in aqueous
2016 ).
Figure 1.3 Relation between diabetes and cataract with age.
UV exposure
variable effect on cataract severity. UV radiations are absorbed in the lens .UV
radiations cause the protein to clump that is found in the lens (Fahim et al., 2016).
Smoking
the eyes. Smoking leads to accumulation of heavy metals like cadmium in the
lens. Smoking is associated with 17% increased risk of cataract depends upon the
Steroid use
Systematic steroid use has been associated with posterior sub capsular cataract.
Higher doses and prolonged uses increased the risk of cataract (Fahimet al.,
2016). Other risk factors of cataract include family history, diagnosis of cataract
visual acuity test used to performed doing eye chart exam the doctor will ask to
read letter from distance to find how sharp the vision is. The eye being examined
risk factors. Taking measures to changes these factors can delay the onset and
injury to the lens or its capsule such as blunt ocular trauma or a penetrating
injury. These forms of cataract usually occur within months of injury and can
result in a rapid and significant reduction in visual function (Kim et al., 2017).
effects, but it has the genetics basis as well. There are around 38 genes
10
responsible for different types of cataract. Eye lens consists of different types of
proteins. They are arranged in such a manner to maintain the transparency of
When there are changes in these genetic components this can result in lens
opacification, these changes are thus related with age related phenomena.
Crystallin is the major lens protein. It is essential for lens maintance. Usually lens
Alpha crystalline is the largest beta and gammas have similar amino acid
sequences and similar structures. The beta crystalline has 5 protein chains, (3
CRYBB1, BB2, BB3 and BB4. The lens opacity involves biochemical mechanism in
the aging process including unfolding and protein aggregation. The crystalline
are responsible for protein aggregation (Gupta PD et al., 2006). There are
crystallin is an 18.6 kb gene with 6 exons, a structure common to all three of the
genes for β B-crystalline and CRYBA4 (Yang et al., 2008). Studies have shown
that, genetic risk factors are responsible for heritable age related nuclear cataract
11
the percentage for heredity is 14 % -48% and 24%- 75% for age related cortical
Diagnosis of cataract
confirm it after the examination of eye. Different tests are performed to diagnose
cataract including brief eye examination (Henderson et al., 2014). Following are
Visual acuity
The test is performed to measure vision quality at certain distance. Doctor will
ask to read letters of different size from the chart. The visual acuity test is easy,
pain less and fast way for cataract diagnosis (Henderson et al., 2014).
12
Contrast sensitivity
cataract decreases, the image contrast due to light scattering and glare caused by
Slit lamp
This test is by using special microscope .the microscope magnifies the eye to
severity of cataract on the lens. The patient will be asked to place the chin on chin
rest of split lens and light will be directed to the lens of patient’s eye. The doctor
will examine the cloudiness of lens by looking through the slit lamp (Gargallo
2014).
Pupil dilation
lens. The test will measure that weather the cataract is affecting quality of vision
or not.
Treatment of cataract
Cataract surgery is the major option to treat it. The surgery includes lens
implantation (Aao, 2016).The new lens is placed in the eye so the person is able
to see clearly and cloudiness of the vision is treated. Modern cataract operation
provides restoration of vision by the removal of the opaque lens nucleus and
13
During surgery the lens nucleus and cortex are extracted through an opening in
the anterior part of the lens capsule but the main part of the capsule remains in
the eye in order to secure the implanted IOP. Intraocular lenses have been made
improved throughout the years since the first IOP was implanted by Sir Harold.
Modern IOPS are foldable and therefore can be implanted by small incision,
which minimizes tissue trauma to the eye (Spalton et al., 2016).The modern
Phacoemulsification
process involves minute incisions with the use of narrow probe to carefully
breakup and slupt crystalline lens using, ultrasonic vibrations. This method can
largely intact however ECEC refers to the procedure that doesn’t involve an
ultrasound device .This method is expensive .The machine used are of high cost
within its capsule into posterior segment of the eye this allows the removal of
lens opacity and improved vision function the method involves whole lens
2015).
14
In this type of surgery eye lens is removed while the capsule that contain lens is
Objectives of Study
1. To assess the risk factor responsible for age related cataract in the study area.
2. To detect the mutations at exon 6 of CRYBB1 gene responsible for age related cataract.
15
Chapter 2
Ethical Approval
Ethical approval for this study was taken from the bio ethical committee of
Hazara University Mansehra before starting the study.
Informed Consent
Before getting the data and blood samples, patients were briefed about this study
and the use of data and blood sample. After being agreed to share the data and
Data Collection
The data from the age related cataract patients was collected through a specially
questionnaire contains two sections, the first section contains information about
the patient and section portion contain signs and symptoms and causes of
cataract. Data was collected from 1000 patients that belong to Mansehra District.
Inclusion Criteria
For data and sample collection, only age related cataract patients were recruited
that reside in Mansehra District and were diagnosed with age related cataract.
Exclusion Criteria
For data collection and sample collection, only age related cataract patients were
16
Sample collection
Blood samples were collected from age related cataract patients. Around 3-5 mL
DNA Extraction
method that was optimized earlier in the same lab. The genomic DNA was
were taken and blood samples were defreezed before extraction and about 200
dilutions were added. After dilution 300µllysis buffer was added. For 2-3
minutes at room temperature tubes were left by adding beta marcepto ethanol
and PK. By using the pipette tip supernant was shifted to the labeled eppendorff
tubes and amount of isopropanol was equally added. For 60 minutes the
centrifugation was done at 8000rpm. After centrifugation pellet was air dried by
carefully removing the ethanol. About 60 ddH20 was added to pellet. To check
Selection of primers
primers. The double distilled water was used to dilute the primers. So the final
17
The PCR amplification of acquired DNA was carried out using it as a template.
Sr
no
reagents
2 Dntps 2.5 μl
5 Template 2.0µ1
6 ddh20 0.5µ1
7 Mgcl2 1.5µ1
18
35cycle
1mint 10ºC
The 15 % agrose gel was used to check PCR amplified product. With 4µl of
loading dye the product was mixed and loaded on the gel. For 30 minutes gel
find the presence of desired PCR bands. The photographs of bands were
captured.
PCR product was analyzed through agarose gel.1.5% agarose gel was prepared by
adding 0.75g of agarose powder, 2ml of 50X TAE and 48ml of distilled water.
Solution was heated for 2 minutes so that solute dissolved completely in solvent.
About 25µL of Ethidium Bromide was added after cooling the solution. Gel tank
was use to transfer the gel. The combs were inserted and the solution was left for
solidification. Combs were removed after wells formation. With PCR product
about 2µl dye was mixed. The product was loaded on wells after that. The gel
19
electrophoresis was carried out for 30-40 minutes. The obtained product was
The amplified PCR product was sent to Beijing Genomic Institute China. The
product was sent along with primers for further sequencing of fragments.
The sequencing of blood samples was carried out at Beijing Genomic Institute
China (BGI). The sequence of cataract patients and normal individuals were
Mutational analysis
The data of sequencing was analyzed for finding more about mutations if any by
Statistical Analysis
All the collected data was statistically analyzed by using SPSS software for the
risk factor assessment. While MUSCLE and Bio edit were used for the analysis of
sequences.
20
Chapter 3
RESULTS
The risk factors responsible for cataract were recorded on the basis of
information from the patients. The structure survey was carried out through
gathering the information from ARC patients that were regularly visiting the
hospital. In this study following risk factors are responsible for age related
cataract.
AGE
In this study, age has been found the most important factors associated with
cataract. Patients were divided into 3 age groups, i.egroup1 (51-65)years old
with age related cataract wasranged from 66-75 years, followed by 51-65 years to
21
Gender of Patient
The collected data shows that female are affected more 51.8 % as compare to the
males. It can be seen in fig 3.2
22
All the sub types of cataract were found in the individuals of study area. Along
with these, the highest ratio among types of cataract was of cortical i.e (55.0%)
followed by nuclear cataract (36.8%) and sub- capsular cataract (4.4%), while
Various risk factors are responsible for cataract. Steroid use was found as highest
risk factor accounts 52.4 % of all the cases. It depends upon the amount of
23
cataract. Hyper tension is second most potential risk factor of cataract .around
485 individuals i-e 48.5% has chances of cataract due to hypertension. Changes in
Next important risk factor is diabetes mellitus. Out of 1000 patients 393 were
them. Almost 30.9% individuals are affected with cataract due to UV exposure.
involved in smoking.
Table 3.1 Potential risk factors responsible for age related cataract
Steroid Use
Hypertension
Diabetes
UV Exposure
Smoking
Family History
524 / 1000
485 / 1000
393 / 1000
309 / 1000
87 / 1000
153/ 1000
52.4%
48.5%
39.3%
30.9%
8.7 %
1.53 %
24
Symptoms of Cataract
clarifying the type of research work. Blood sample were collected from 35
patients of age related cataract, with the help of ophthalmologist from Mehboob
Parameters
Sensitive To Light
High Myopia
Double Vision In One Eye
Blurred vision
Family History
Frequencies
984/ 1000
974
968
245
882
877
51
153
Valid Percentage
98.4%
97.4%
96.8%
24.5%
8.82%
8.87%
5.1%
1.53%
25
The DNA was isolated from blood by using standard protocol method. This
work was perfomed in the Human Genetics Lab Hazara University Mansehra.
The figures shows result of extracted DNA. The quality and quantity of DNA
The extracted genomic DNA was used as template for amplification of desired
26
Figure 3.5 Agarose gel representation of PCR amplified product using CRYBB1
primers.
The sequencing of samples carried out at Beijing Genomic Institute China. The
The sequences were obtained from BGI, China. The sequences were BLAST
against NCBI to check the similarity. The results were aligned with reference
sequence of exon 6. The alignment results of disease and control were shown
GCTGTGGCCAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATC
CAGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTG
CCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGG
AGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGG
GAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGAT
AAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAAAAG
ACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAAAGATACA
ATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAA
27
GGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCCAGGCGAGGT
CAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTGCCACAGACTA
TAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTAGTCACCCATAGCACCTGCCC
GCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGA
GAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCA
TGAGAGTCAGAGAGCAGGGCCATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGG
AGAGGGAGAGGGGAGAGAGTGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAA
GGACAGATAGAGAGATAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGA
GAGGGAGAGAA
Ex6 GGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCCAG
4-G1 GGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCCAG
************************************************************
Ex6 GCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCTT
4-G1 GCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCTT
************************************************************
Ex6 TGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTA
4-G1 TGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTA
************************************************************
Ex6 GTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGT
4-G1 GTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGT
************************************************************
Ex6 AAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGACAG
4-G1 AAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGACAG
************************************************************
Ex6 AGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGATAAA
4-G1 AGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGATAAA
29
************************************************************
Ex6 GACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAAAAGA
4-G1 GACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAAAAGA
************************************************************
Ex6 CAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAAAGAT
4-G1 CAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAAAGAT
************************************************************
Ex6 ACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAA
4-G1 ACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAA
*************************************************
GCTGTGGCCAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCCAGGCG
AGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTGCCACAGACTAT
AGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCC
TGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGG
AGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAG
GGCCATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGA
GAAAAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAAAGATAC
AATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAACAGACAGGCAGATAGG
30
Ex6 GCTGTGGCCAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGC
4-G2 GCTGTGGCCAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGC
************************************************************
Ex6 AGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCA
4-G2 AGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCA
************************************************************
Ex6 GCTTCCCCTTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGG
4-G2 GCTTCCCCTTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGG
************************************************************
Ex6 TCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAA
4-G2 TCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAA
************************************************************
Ex6 GTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAA
4-G2 GTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAA
************************************************************
Ex6 AGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCA
4-G2 AGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCA
************************************************************
Ex6 TGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAG
4-G2 TGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAG
************************************************************
Ex6 TGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGAT
4-G2 TGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGAT
************************************************************
Ex6 AAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGA
4-G2 AAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGA
*****************************************************
31
ATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAACAGACAGGCAGA
TAGGCATGCTGTGGCCAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGC
AGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCC
CCTTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTAGTC
ACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGA
ACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGG
CAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGATAAAGACGGAAGTGGAGAG
AGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAAAAGACAGAAATAGAGAGAGAA
GTAAATATAATTAAAAAGGACAGATAGAGAGATAA
Ex6 -GCTGTGGCCAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTG
4G3 TGCTGTGGCCAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTG
***********************************************************
Ex6 CAGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCC
4G3 CAGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCC
************************************************************
Ex6 AGCTTCCCCTTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGG
4G3 AGCTTCCCCTTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGG
************************************************************
Ex6 GTCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCA
32
4G3 GTCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCA
************************************************************
Ex6 AGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAA
4G3 AGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAA
************************************************************
Ex6 AAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCC
4G3 AAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCC
************************************************************
Ex6 ATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGA
4G3 ATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGA
************************************************************
Ex6 GTGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGA
4G3 GTGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGA
************************************************************
REF TAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAA
4G3 TAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAA
************************************************************
33
CTGCTGTGGCCAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGA
TCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTG
TGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTAGTCACCCA
TAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGAACCCAC
AGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGGCAGAGA
TAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGATAAAGACGGAAGTGGAGAGAGGAAG
AAAGGGAGGGAGAAGGAGAGGGGAGAGAGTGTTTATAGACAGAAATAGAGAGAGAAGTAAATAT
AATTAAAAAGGACAGATAGAGAGATAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGA
GGAACAGAGAGGGAGAGAAACAGACAGGCAGATAGGCA
EX6 --GCTGTGGCCAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCT
4-G4 CTGCTGTGGCCAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCT
**********************************************************
EX6 GCAGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGC
4-G4 GCAGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGC
************************************************************
Ex6 CAGCTTCCCCTTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGG
4-G4 CAGCTTCCCCTTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGG
************************************************************
Ex6 GGTCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGC
4-G4 GGTCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGC
************************************************************
Ex6 AAGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGA
4-G4 AAGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGA
************************************************************
Ex6 AAAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGC
34
4-G4 AAAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGC
************************************************************
Ex6 CATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGG-----------
4-G4 CATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAAAG-----------
*************************************************
Ex6 AGTGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAG
4-G4 ---------AGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAG
***************************************************
Ex6 ATAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAA
4-G4 ATAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAA
************************************************************
region.
AAGTGCTGCTGTCTGCAGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCC
TGCTGAGCCAGCTTCCCCTTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGG
GGGTCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTC
CCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAG
ACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGATAAA
GACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAAAAGACA
GAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAAAGATACAATG
AGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAACAGACAGGCCAGAATAGGCA
35
Comparison of Reference Sequence and 4G5
Ex6 AAGGAAAGTGCTGCTGTCTGCAGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCC
4-G5 -----AAGTGCTGCTGTCTGCAGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCC
*******************************************************
Ex6 CTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTGCCACAGACTATAGGGCCTGATGTCT
4-G5 CTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTGCCACAGACTATAGGGCCTGATGTCT
************************************************************
Ex6 GCCAGACTATAAAATGGGGGGTCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCCTG
4-G5 GCCAGACTATAAAATGGGGGGTCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCCTG
************************************************************
Ex6 TCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGC
4-G5 TCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGC
************************************************************
Ex6 TGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCAT
4-G5 TGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCAT
************************************************************
Ex6 GAGAGTCAGAGAGCAGGGCCATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAG
4-G5 GAGAGTCAGAGAGCAGGGCCATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAG
************************************************************
Ex6 GGAGAGGGAGAGGGGAGAGAGTGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATT
4-G5 GGAGAGGGAGAGGGGAGAGAGTGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATT
************************************************************
Ex6 AAAAAGGACAGATAGAGAGATAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGA
4-G5 AAAAAGGACAGATAGAGAGATAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGA
************************************************************
Ex6 GGAACAGAGAGGGAGAGAAACAGACAGGC
4-G5 GGAACAGAGAGGGAGAGAAACAGACAGGC
*****************************
36
Figure 3.11 Nucleotide sequence peaks of CRYBB1 gene representing exon 6
region.
TTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCCAGGCGAGGTCAGG
GCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTGCCACAGACTATAGG
GCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTAGTCACCCATAGCACCTGCCCGCCT
GCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGC
TGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAG
AGTCAGAGAGCAGGGCCATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAG
GGAGAGGGGAGAGAGTGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGAC
AGATAGAGAGATAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGG
GAGAGAAACAGACAGGCAGATAGG
Ex6 AAGGAAAGTGCTGCTGTCTGCAGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCC
4-G6 AAGGAAAGTGCTGCTGTCTGCAGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCC
************************************************************
Ex6 CTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTGCCACAGACTATAGGGCCTGATGTCT
4-G6 CTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTGCCACAGACTATAGGGCCTGATGTCT
************************************************************
37
Ex6 GCCAGACTATAAAATGGGGGGTCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCCTG
4-G6 GCCAGACTATAAAATGGGGGGTCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCCTG
************************************************************
Ex6 TCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGC
4-G6 TCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGC
************************************************************
Ex6 TGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCAT
4-G6 TGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCAT
************************************************************
Ex6 GAGAGTCAGAGAGCAGGGCCATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAG
4-G6 GAGAGTCAGAGAGCAGGGCCATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAG
************************************************************
Ex6 GGAGAGGGAGAGGGGAGAGAGTGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATT
4-G6 GGAGAGGGAGAGGGGAGAGAGTGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATT
************************************************************
Ex6 AAAAAGGACAGATAGAGAGATAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGA
4-G6 AAAAAGGACAGATAGAGAGATAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGA
************************************************************
Ex6 GGAACAGAGAGGGAGAGAAACAGACAGGCAGATAGG
4-G6 GGAACAGAGAGGGAGAGAAACAGACAGGCAGATAGG
************************************
38
region.
CCTTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTAGTC
ACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGA
ACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGG
CAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGATAAAGACGGAAGTGGAGAG
AGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAAAAGACAGAAATAGAGAGAGAA
GTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAAAGATACAATGAGGGAGAGATAGTGG
GGGAGAGAGGAACAGAGAGGGAGAGAAAC
Ex7 CCTTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGAC
4-G7 CCTTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGAC
************************************************************
Ex7 TCTAGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCC
4-G7 TCTAGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCC
************************************************************
Ex7 AGGTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAG
4-G7 AGGTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAG
************************************************************
Ex7 ACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGA
4-G7 ACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGA
************************************************************
Ex7 TAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAA
4-G7 TAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAA
************************************************************
Ex7 AAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAA
4-G7 AAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAA
************************************************************
39
Ex7 AGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAAC
4-G7 AGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAAC
******************************************************
40
region
TTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCCAGGCGAGGTCAGG
GCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTGCCACAGACTATAGG
GCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTAGTCACCCATAGCACCTGCCCGCCT
GCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGC
TGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAG
AGTCAGAGAGCAGGGCCATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAG
GGAGAGGGGAGAGAGTGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGAC
AGATAGAGAGATAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGG
GAGAGAAACAGACAGGCAGATAGG
REF TTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCCAGGCGA
4-G8 TTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCCAGGCGA
************************************************************
REF GGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTG
4-G8 GGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTG
************************************************************
Ex6 CCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTAGTCA
4-G8 CCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTAGTCA
41
************************************************************
Ex6 CCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGA
4-G8 CCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGA
************************************************************
Ex6 GGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAG
4-G8 GGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAG
************************************************************
Ex6 AGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGATAAAGACG
4-G8 AGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGATAAAGACG
************************************************************
Ex6 GAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAAAAGACAGA
4-G8 GAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAAAAGACAGA
************************************************************
Ex6 AATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAAAGATACAA
4-G8 AATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAAAGATACAA
************************************************************
Ex6 TGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAACAGACAGGCAGATAG
4-G8 TGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAACAGACAGGCAGATAG
************************************************************
Ex6 G
4-G8 G
region
42
AGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCCAGGCGAGG
TCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTGCCACAGACT
ATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTAGTCACCCATAGCACCTGCC
CGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTG
AGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCC
ATGAGAGTCAGAGAGCAGGGCCATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGG
GAGAGGGAGAGGGGAGAGAGTGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAA
AGGACAGATAGAGAGATAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAG
AGAGGGAGAGAAACAGACAGGCAGATAGG
Ex6 AGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCCA
4-G9 AGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCCA
************************************************************
Ex6 GGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCT
4-G9 GGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCT
************************************************************
Ex6 TTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCT
4-G9 TTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCT
************************************************************
Ex6 AGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGG
4-G9 AGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGG
************************************************************
Ex6 TAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGACA
4-G9 TAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGACA
************************************************************
43
Ex6 GAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGATAA
4-G9 GAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGATAA
************************************************************
Ex6 AGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAAAAG
4-G9 AGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAAAAG
************************************************************
Ex6 ACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAAAGA
4-G9 ACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAAAGA
************************************************************
Ex6 TACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAACAGACAGGCA
4-G9 TACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAACAGACAGGCA
************************************************************
Ex6 GATAGG
4-G9 GATAGG
******
6region.
44
GCTGTGGCCAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATC
CAGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTG
CCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTAGTCACCCATA
GCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGAACCCACA
GCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGGCAGAGAT
AGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGATAAAGACGGAAGTGGAGAGAGGAAGA
AAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAAAAGACAGAAATAGAGAGAGAAGTAAATAT
AATTAAAAAGGACAGATAGAGAGATAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGA
GGAACAGAGAGGGAGAGAAACAGACA
Ex6 GCTGTGGCCAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGC
4-G10 GCTGTGGCCAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGC
************************************************************
Ex6 AGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCA
4-G10 AGTGATCCAGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCA
************************************************************
Ex6 GCTTCCCCTTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGG
4-G10 GCTTCCCCTTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGG
************************************************************
Ex6 TCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAA
4-G10 TCGGACTCTAGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAA
************************************************************
Ex6 GTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAA
4-G10 GTCCCCAGGTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAA
************************************************************
Ex6 AGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCA
4-G10 AGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCA
45
************************************************************
Ex6 TGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAG
4-G10 TGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAG
************************************************************
Ex6 TGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGAT
4-G10 TGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGAT
************************************************************
Ex6 AAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAAC
4-G10 AAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAAC
************************************************************
Ex6 AGACA
4-G10 AGACA
*****
region
46
CAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCCAGGCGAG
GTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCCTTTGTGCCACAGAC
TATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTCTAGTCACCCATAGCACCTGC
CCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAGGTAAGAGGGAACCCACAGCCCAGCT
GAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGACAGAGAGAGGGAGGCAGAGATAGCAGTGC
CATGAGAGTCAGAGAGCAGGGCCATGGAGATAAAGACGGAAGTGGAGAGAGGAAGAAAGGGAG
GGAGAGGGAGAGGGGAGAGAGTGAGAAAAGACAGAAATAGAGAGAGAAGTAAATATAATTAAA
AAGGACAGATAGAGAGATAAGCAAAGATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACA
GAGAGGGAGAGAAACAGACAGGCAGATAGG
EX6 CAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCC
4-H1 CAGGGTTTCTGCTGTGTGTGCTGGTCTCACAAAGGAAAGTGCTGCTGTCTGCAGTGATCC
************************************************************
EX6 AGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCC
4-H1 AGGCGAGGTCAGGGCCCCAGTCCCCCACTCCCTGCCCAGGCCTGCTGAGCCAGCTTCCCC
************************************************************
EX6 TTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTC
4-H1 TTTGTGCCACAGACTATAGGGCCTGATGTCTGCCAGACTATAAAATGGGGGGTCGGACTC
************************************************************
EX6 TAGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAG
4-H1 TAGTCACCCATAGCACCTGCCCGCCTGCCTGTCCTCCAGCAGGAAGTAGCAAGTCCCCAG
************************************************************
EX6 GTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGAC
4-H1 GTAAGAGGGAACCCACAGCCCAGCTGAGAGCTGAAGGGGAGGGGAAGAGAAAAGGGAGAC
************************************************************
REF AGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGATA
4-H1 AGAGAGAGGGAGGCAGAGATAGCAGTGCCATGAGAGTCAGAGAGCAGGGCCATGGAGATA
47
************************************************************
EX6 AAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAAAA
4-H1 AAGACGGAAGTGGAGAGAGGAAGAAAGGGAGGGAGAGGGAGAGGGGAGAGAGTGAGAAAA
************************************************************
Ex6 GACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAAAG
4-H1 GACAGAAATAGAGAGAGAAGTAAATATAATTAAAAAGGACAGATAGAGAGATAAGCAAAG
************************************************************
Ex6 ATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAACAGACAGGC
4-H1 ATACAATGAGGGAGAGATAGTGGGGGAGAGAGGAACAGAGAGGGAGAGAAACAGACAGGC
************************************************************
Ex6 AGATAGG
4-H1 AGATAGG
*******
region
48
Chapter 4
DISCUSSIONS
of protein. Age related cataract is distributed into different types due to its
morphology. In Pakistan the prevalence of cataract is 30%.The rate of prevalence
of cataract is increasing 1 million per year. This study shows that people of old
WHO cataract is the leading cause of reversible blindness and the rate of
estimate 38.8% men and 45.9 % women over the age of 75 years are at higher risk
Several risk factors found to be related with age related cataract. The result
shows that individual from age group II (66-75) year are at higher risk of age
that people over the age of 50 years get blindness mainly due to cataract and
from other eye diseases (Taylor et al .,2013). Gender also plays important role for
cataract formation. This study shows that females are at higher risk 51%of having
estrogen level after menopause which usually occurs after 50 years. These results
49
In this study, age related cataract is classified into four types. Cortical cataract,
nuclear cataract, subs capsular cataract and congenital cataract. The percentage
of cortical cataract is higher i-e 55.0% in this study area as compared to other sub
types. Other studies showed that the genetic elements increase the incidence of
age related cortical cataract accounting for 53-58 % (Hammad et al., 2001).
According to Kouzis et al (2018) cortical and nuclear cataract is higher risk for age
The results show that steroid use by cataract patients plays an important role in
cataract genesis. About 52.4% are getting cataract due to prolong steroid use.
Other epidemiological studies show that corticosteroids and cataract have strong
association, while prolong steroid use causes posterior sub capsular cataract
(Condon et al., 2006). Oral corticosteroids are used for treatment of inflammatory
and immune diseases like arthritis asthma (Alison et al., 2006).
Hypertension is the second most important risk factor causing cataract in the
study area. About 48.5% cataract patients reported to have hypertension, which
Dieu (2017) studied the incident of cataract by hypertension and the results
revealed that individuals from 50-70 years specifically gain the cataract due to
increase in hypertension.
factor. The results of this study reveals that 39.3% cataract patients were
50
suffering from diabetes before getting the cataract, which shows that it is one of
the potential risk factor. Studies carried out on age related cataract shows the
similar results as that of current study. Diabetes was found to be common cause
of cataract in old age and diabetic patients are 2-3 times more likely to have
Ultraviolet light appears to be one of the important risk factor which accounts for
30.9% of all the persons. Other study shows that as the person ages the eyes are
Smoking has mild association with age related cataract. Total of 8.7% causes of
cataract due to smoking in this study. The result of the study carried out by
Nindhi are in agreement with this study that smoking increase the prevalence of
cortical and nuclear cataract and leads to damage to lens (Nindhi et al., 2018).
Family history is also an important risk factor of cataract. Present study shows
that only 1.53% of heritability causes are responsible cataract. Other study shows
mutation for CRYBB1 gene. The results of this study are supported by Jiao (2008)
51
who carried out similar study and reported no mutation at exon 6 of CRYBB1
gene. Hence this study verified it. So there is a possibility that either any other
exon of CRYBB1 or other gene is responsible for the age related cataract in the
study area.
52
CONCLUSIONS
The present study shows the major risk factors associated with age related
cataract and mutations among CRYBB1 gene in district Mansehra .The age
related cataract is a major ocular disorder affecting the daily activities of the
people. Women are more affected by ARC as compare to men. Aging, steroid
CRYBB1 gene. It is possible that either any other exon of CRYBB1 or any other
53
RECOMMENDATIONS
The risk factors responsible for cataract like UV exposure, steroid use and
smoking are modifiable and can be decreased by the awareness to the public. It
To find out such mutations further research should be done. Such mutations
could find out by increasing the blood sample size taken from patients. The
further mutations can also be detected by studying the other exons of CRYBB1
gene. By increasing the amount of data collection and more interaction with
patients will be able to find out major or accurate risk factors for ARC. The
minimized and also non modifiable causes of ARC could be minimized by giving
awareness.