install_notes.

md 2024-01-12

Libraries dependencies
1 Compiler

sudo apt update && \

sudo apt -y install gcc cpp g++ gfortran

2 zlib

mkdir -p /home/ict/workspaces/coawst/build_coawst/src && \

cd /home/ict/workspaces/coawst/build_coawst/src && \
wget http://www.zlib.net/fossils/zlib-1.2.11.tar.gz && \
tar xzvf zlib-1.2.11.tar.gz && \
cd zlib-1.2.11 && \
./configure --
prefix=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/zlib && \
make && \
make install && \
nano ~/.bashrc

Add the following command at the end of the bashrc file

# zlib
LD_LIBRARY_PATH=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/zlib/lib
:$LD_LIBRARY_PATH

source ~/.bashrc

2 zlib

cd /home/ict/workspaces/coawst/build_coawst && \
mkdir -p /home/ict/workspaces/coawst/build_coawst/src && \
cd /home/ict/workspaces/coawst/build_coawst/src && \
wget http://www.zlib.net/fossils/zlib-1.2.11.tar.gz && \
tar xzvf zlib-1.2.11.tar.gz && \
cd zlib-1.2.11 && \
./configure --
prefix=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/zlib && \
make && \
make install && \
nano ~/.bashrc
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Add the following command at the end of the bashrc file

# zlib
LD_LIBRARY_PATH=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/zlib/lib
:$LD_LIBRARY_PATH

source ~/.bashrc

3 hdf5

cd /home/ict/workspaces/coawst/build_coawst/src && \
wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-
1.12.0/src/hdf5-1.12.0.tar.gz && \
tar xzvf hdf5-1.12.0.tar.gz && cd hdf5-1.12.0 && \
./configure --
prefix=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/hdf5 --with-
zlib=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/zlib --enable-
fortran && \
make && \
make install && \
nano ~/.bashrc

Add the following command at the end of the bashrc file

# hdf5
export
PATH=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/hdf5/bin:$PATH
export
LD_LIBRARY_PATH=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/hdf5/lib
:$LD_LIBRARY_PATH
export HDF5_HOME=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/hdf5
export HDF5_INCDIR=$HDF5_HOME/include
export CPATH=$HDF5_HOME/include
export HDF5_LIBDIR=$HDF5_HOME/lib

source ~/.bashrc

4 netcdf-c

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cd /home/ict/workspaces/coawst/build_coawst/src && \
wget https://downloads.unidata.ucar.edu/netcdf-c/4.9.2/netcdf-c-
4.9.2.tar.gz && \
tar xzvf netcdf-c-4.9.2.tar.gz && \
cd netcdf-c-4.9.2 && \
sudo apt-get install libxml2-dev && \
sudo apt-get install m4 && \
sudo apt-get update && \
sudo apt-get install curl && \
sudo apt-get update && \
sudo apt-get install libcurl4-openssl-dev && \
sudo apt-get install zlib1g-dev && \
./configure --
prefix=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/netcdf-c --
enable-netcdf-4 LDFLAGS="-
L/home/ict/workspaces/coawst/build_coawst/LIBRARIES/hdf5/lib" CPPFLAGS="-
I/home/ict/workspaces/coawst/build_coawst/LIBRARIES/hdf5/include" CC=gcc &&
\
make && \
make install && \
nano ~/.bashrc

Add the following command at the end of the bashrc file

# netcdf-c
export
PATH=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/netcdf/bin:$PATH
export
LD_LIBRARY_PATH=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/netcdf/l
ib:$LD_LIBRARY_PATH
export NETCDF=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/netcdf
export NETCDF_INC=$NETCDF/include
export NETCDF_LIB=$NETCDF/lib
export NETCDF_INCDIR=$NETCDF/include
export NETCDF_LIBDIR=$NETCDF/lib
export NETCDFPATH=$NETCDF

source ~/.bashrc

5 netcdf-fortran

cd /home/ict/workspaces/coawst/build_coawst/src && \
wget https://downloads.unidata.ucar.edu/netcdf-fortran/4.6.1/netcdf-
fortran-4.6.1.tar.gz && \
tar xzvf netcdf-fortran-4.6.1.tar.gz && \
cd netcdf-fortran-4.6.1 && \

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sudo apt-get install libnetcdf-dev && \

./configure --
prefix=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/netcdf_fortran
LDFLAGS="-
L/home/ict/workspaces/coawst/build_coawst/LIBRARIES/netcdf_fortran/lib"
CPPFLAGS="-
I/home/ict/workspaces/coawst/build_coawst/LIBRARIES/netcdf_fortran/include"
FC=gfortran F77=gfortran && \
make && \
make install

cd /home/ict/workspaces/coawst/build_coawst/src && \
wget https://downloads.unidata.ucar.edu/netcdf-cxx/4.3.1/netcdf-cxx4-
4.3.1.tar.gz && \
tar xzvf netcdf-cxx4-4.3.1.tar.gz && \
cd netcdf-cxx4-4.3.1 && \
CC=gcc CXX=g++ FC=gfortran FCFLAGS="-m64" \
F77=gfortran FFLAGS="-m64" \
CPPFLAGS="-I/home/ict/workspaces/coawst/build_coawst/LIBRARIES/hdf5/include
-I/home/ict/workspaces/coawst/build_coawst/LIBRARIES/netcdf/include" \
LDFLAGS="-L/home/ict/workspaces/coawst/build_coawst/LIBRARIES/hdf5/lib -
L/home/ict/workspaces/coawst/build_coawst/LIBRARIES/netcdf/lib" && \
./configure --
prefix=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/netcdf && \
make && \
make install

6 mpich

cd /home/ict/workspaces/coawst/build_coawst/src && \
wget http://www.mpich.org/static/downloads/3.3.2/mpich-3.3.2.tar.gz && \
tar -xzvf mpich-3.3.2.tar.gz && \
cd mpich-3.3.2 && \
./configure --
prefix=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/mpich FFLAGS=-
fallow-argument-mismatch && \
make && \
make install && \
nano ~/.bashrc

#mpich
export
PATH=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/mpich/bin:$PATH
export
LD_LIBRARY_PATH=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/mpich/li
b:$LD_LIBRARY_PATH

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source ~/.bashrc

7 libpng

cd /home/ict/workspaces/coawst/build_coawst/src && \
wget https://download.sourceforge.net/libpng/libpng-1.6.37.tar.gz && \
tar xzvf libpng-1.6.37.tar.gz && \
cd libpng-1.6.37 && \
./configure --
prefix=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/libpng && \
make && \
make install && \
nano ~/.bashrc

# libpng
export
LD_LIBRARY_PATH=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/libpng/l
ib:$LD_LIBRARY_PATH

source ~/.bashrc

8 jasperlib

cd /home/ict/workspaces/coawst/build_coawst/src && \
wget https://www.ece.uvic.ca/~frodo/jasper/software/jasper-2.0.10.tar.gz &&
\
tar -xvzf jasper-2.0.10.tar.gz && \
cd jasper-2.0.10/build && \
sudo apt install cmake && \
cmake -G "Unix Makefiles" -
H/home/ict/workspaces/coawst/build_coawst/src/jasper-2.0.10 -
B/home/ict/workspaces/coawst/build_coawst/src/jasper-2.0.10/build -
DCMAKE_INSTALL_PREFIX=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/ja
sper && \
make install && \
nano ~/.bashrc

# jasper
export
PATH=/home/ict/workspaces/coawst/build_oawst/LIBRARIES/jasper/bin:$PATH
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export
LD_LIBRARY_PATH=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/jasper/l
ib64:$LD_LIBRARY_PATH

source ~/.bashrc

COAWST Code

cd /home/ict/workspaces/coawst/ && \
sudo apt install git && \
git clone https://github.com/DOI-USGS/COAWST.git

MCT

cd /home/ict/workspaces/coawst/COAWST/Lib/MCT
MPIHEADER=-
I/home/ict/workspaces/coawst/build_coawst/LIBRARIES/mpich/include && \
./configure --prefix=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/MCT
&& \
make && \
make istall && \
nano ~/.bashrc

export
MCT_INCDIR=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/MCT/include
export
MCT_LIBDIR=/home/ict/workspaces/coawst/build_coawst/LIBRARIES/MCT/lib

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