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The secondary metabolites can be classified according to different features and properties:
OHC OH
CO2H
1. Pathways of the terpenes (isoprenoids, sterols and NH2 PO
CO2H
NH
NH2 L-tryptophan
anthracenes and quinons) L-valine
phosphoenolpyruvate
OH OH
CO2H OP
HO2C O OP
4. Pathway of the shikimic acid (aromatic amino acids, NH2 O OH OH OH
L-alanine pyruvic acid deoxyxylulose 5-P METHYLERYTHRITOL 4-P
OH
phenylpropanoids and lignans) CO2H CoAS O
NH2 HO2C
L-leucine OH
5. Other pathways… ACETYL-CoA
MEVALONIC ACID
KREBS CYCLE
CO2H CO2H CO2H HO2C CO2H HO2C CO2H
HO2C HO2C
NH2 NH2 O O NH2
To the metabolites coming from these pathways, we should L-isoleucine L-aspartic acid oxaloacetic acid 2-oxoglutaric acid L-glutamic acid
NH
add the natural products from mixed biogenesis (eg. S CO2H H2N CO2H
H2N N
H
CO2H
H2N
CO2H
Hemiterpenes (C5)
OH OPP OPP
farnesol (C15)
dimethylallyl PP isopentenyl PP
(DMAPP) (C5) (IPP) (C5)
OH
geranylgeraniol (C20)
C10 Monoterpenes (C10)
Iridoids
IPP
squalene (C30)
C15 Sesquiterpenes (C15)
IPP
phytoene (C40) ×2
C20 Diterpenes (C20)
IPP
×2
OH
C25 Sesterterpenes (C25)
Three molecules of acetyl-coenzyme A are used to The enzyme thus achieves what is a less favourable were gradually detailed in a series of painstakingly
form MVA. Two molecules combine initially in a Claisen reaction. The conversion of HMG-CoA into (3R)-MVA Steroids (C18−C30)
condensation to give acetoacetyl-CoA, and a third is executed experiments. For many years, the early
involves a two-step reduction of the thioester group to
incorporated via a stereospecific aldol addition giving the
C5 isoprene unit
branched-chain ester 3-hydroxy-3-methylglutaryl-CoA
a primary alcohol via the aldehyde, and provides an
isoprene
essentially
parts of the
irreversible and rate-limiting transformation.
C40 mevalonate pathway were Tetraterpenes
believed(C40to) be
Carotenoids
(HMG-CoA) (Figure 5.4). Two of the acetyl-CoA
molecules appear to be bound to the enzyme via a
Drug-mediated inhibition of this enzyme (HMG-CoA
reductase) is an important means of regulating the
common to the whole range of natural terpenoid
Figure 5.2steroid
derivatives in all organisms. However, after detailed
Figure 5.1
thiol group. One linkage is broken during the Claisen
reaction and the second is subsequently hydrolysed to
biosynthesis of mevalonate and ultimately
cholesterol (see statins, page 98).
of the
The Mevalonate and Methylerythritol Phosphate Pathways: Terpenoids and Steroids 191
E4 2-phospho-4-(CDP)- HO OH 4-(CDP)-2-C-methyl- HO OH
2 × ATP E5 2-C-methyl-D-erythritol D-erythritol
sequential O
phosphorylation of E5 CMP
the primary alcohol HO P O ADP stereospecific allylic
to a diphosphate ATP 5 isomerization O OH
OPP
O OH OH –CO2 H 1
OPP
3 O O O isopentenyl PP
2 P (IPP) +
H OPP P H+ H
O OPP E6 4 E7 OPP O OH OPP E7
E8
HR H S OH H OH
E6
OH
ATP facilitates the OPP OPP
decarboxylation–elimination; isopentenyl PP dimethylallyl PP 2-C-methyl-D-erythritol- 4-hydroxy-3-methyl-
2,4-cyclophosphate but-2-enyl diphosphate OPP H H H
phosphorylation of the tertiary (IPP) (DMAPP) minor
major
alcohol to make a better leaving dimethylallyl PP product product
(DMAPP)
group is apparently not involved
E1: 1-deoxy-D-xylulose 5-phosphate synthase (DXP synthase) E5: 2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase (IspF)
E1: acetoacetyl-CoA synthase E5: phosphomevalonate kinase E2: 2-C-methyl-D-erythritol 4-phosphate synthase; E6: 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (IspG)
E2: 3-hydroxy-3-methylglutaryl-CoA synthase (HMG-CoA synthase) E6: mevalonate 5-diphosphate decarboxylase 1-deoxy-D-xylulose 5-phosphate reductoisomerase (IspC) E7: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (IspH)
E3: 3-hydroxy-3-methylglutaryl-CoA reductase (HMG-CoA reductase) E7: isopentenyl diphosphate isomerase (IPP isomerase) E3: 4-diphosphocytidyl-2-C-methyl-D-erythritol synthase (IspD) E8: isopentenyl diphosphate isomerase (IPP isomerase)
E4: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (IspE)
E4: mevalonate kinase
Figure 5.6
Figure 5.4
EP pathway OPP [1-13C]-D-glucose
HO via
OPP MVA pathway
194 Medicinal Natural Products: A Biosynthetic Approach.single
3rd Edition
bond in LPP
HO OH allows rotation
OPP
THE TERPENES
labelling of IPP
– hemiterpenes and monoterpenes OH
labelling of IPP E OPP
single bond in LPP
allows rotation
OPP
Z
via MEP pathway [1-13C]-D-glucose via MVA pathway OPP OPP OPP
OPP OPP
E ≡ Z OPP
OPP
ure 5.7 OPP
≡ OPP
geranyl PP linalyl PP neryl PP
– H+ (GPP) (LPP) (NPP)
OPP
The menthyl cation, although it is a tertiary, may be substrate molecule and, thus, define the stereochemistry
THE TERPENES – hemiterpenes and monoterpenes The Mevalonate and Methylerythritol Phosphate Pathways: Terpenoids and Steroids 199
198 Medicinal Natural Products: A Biosynthetic Approach. 3rd Edition
oxidation
allylic HO O
NAD+
GPP can be folded in two different ways, thus hydroxylation
allowing generation of enantiomeric LPP molecules O2 E2
NADPH
OPP PPO
E1 (–)-trans-carveol (–)-carvone reduction O
OPP PPO E3 oxidation allylic
isomerization NADPH
O2 NAD+ (–)-piperitone
NADPH E6
GPP GPP (–)-limonene
OH E4 O E5 O NADPH
allylic
hydroxylation E6
OPP OPP OPP OPP (–)-trans- (–)-isopiperitenone piperitenone
isopiperitenol reduction O
OH
(+)-piperitone
NADPH E7 reduction
(+)-menthofuran (+)-neoisomenthol
Figure 5.16
Figure 5.17
α-pinene are illustrated in Figure 5.16. This shows reflecting the common carbocation chemistry involved
the precursor GPP being folded in two mirror-image in these biosyntheses. This suggests that the enzyme (+)-neoisomenthol,
is covering four of the possible eight specificity. The pathway also exemplifies that oxygen
THE TERPENES – hemiterpenes and monoterpenes
The Mevalonate and Methylerythritol Phosphate Pathways: Terpenoids and Steroids 205
The Mevalonate and Methylerythritol Phosphate Pathways: Terpenoids and Steroids 205