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Abstract
A radio-resistant bacterium labeled as strain TMC-6 was isolated from Thal desert, Pakistan and identified through 16S
rRNA gene sequencing as Bacillus indicus strain TMC-6 (MN721293). The isolate was found to be resistant to UV radiation
dose of 6.780 × 103 J/m2 and showed 50% survivability to mitomycin C (6 μg/ml) and H2O2 (30 mM). The bacterium showed
yellowish orange coloration when grown on tryptone yeast glucose (TGY) medium. The cellular metabolite was extracted in
methanol and purified through solid phase extraction with C18 column cartridge. The compound was characterized through
UV/Visible spectrophotometry, Fourier Transform Infra-Red (FT-IR) spectroscopy and Liquid Chromatography Mass Spec-
trometry (LC–MS). The LC–MS analysis of the compound revealed a molar mass of 769 [m/z]− that matched the chemical
formula C34H42O20 and identified as a glycosylated flavonoid xanthorhamnin. The compound showed significant antioxidant
(77.05%) and metal chelation (79.80%) activities. Xanthorhamnin showed promising oxidative damage inhibitory actions
in bovine serum albumin (65.32%) and mice liver lipids (71.61%) and prevented DNA strand breaks from oxidative stress.
Cytotoxicity in brine shrimp larvae was observed when compared with mitomycin C indicating its effect toward cancerous
cells. These findings concluded that xanthorhamnin from radio-resistant Bacillus indicus strain TMC-6 has high antioxidant,
radioprotective, and antitumor properties against UV-mediated oxidative damages.
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A. A. Chaudhri et al.
cellular lipids and proteins [4, 5]. The increase demand of was extracted by phenol-chloroform method [8]. The PCR
antioxidant compounds in pharmaceutics and therapeutics amplification of 16S rRNA was done by using two univer-
has impelled the scientific interest in these extremolytes sal primers F27: AGAGTTTGATCMTGGCTCAG, R1492:
from UV-resistant microorganisms due to easy and high TACGGYTACCTTGTTACGACTT [9, 10]. The amplicons
productivity of the bioactive compounds from bacteria. So obtained were then sequenced at Macrogen Service Center
far, many UV-resistant microbes have been exploited for (Geunchun-gu, Seoul, South Korea); the sequence was com-
the isolation and characterization of radio protective com- puted for nearest possible genus by using BLAST tool at the
pounds. The present study was focused on the radio protec- National Center for Biotechnology Information NCBI data-
tive and antioxidative properties of bioactive compounds base and homologs found were assessed for their phylogeny
extracted from a radio-resistant bacterium Bacillus indicus through Molecular Evolutionary Genetic Analysis (MEGA
strain TMC-6 (MN721293) isolated from desert soil. The X) [11]. Based upon distance matrix, a neighbor-joining tree
resistance of the isolate against UV exposure, H2O2 and was constructed.
mitomycin was analyzed. The colored compound extracted
from Bacillus indicus strain TMC6 (MN721293) was puri- Resistance of Strain TMC‑6 to Heavy Metal
fied and evaluated for its radioprotective and antioxidant
activities in vitro. Stock solutions of transition metals mercury ( Hg2+), cobalt
(Co2+), nickel (Ni2+), zinc (Zn2+), ferrous (Fe2+), and man-
ganese (Mn2+) were prepared in sterilized distilled water
from their respective metal salts (chlorides). Effect of metal
Materials and Methods
ions on the growth of strain TMC-6 was determined by sup-
plementing the TGY agar medium with different metals at
Isolation of UV‑Resistant Bacteria
concentrations of 150 ppm, 250 ppm and 500 ppm, respec-
tively, and incubated at 30 °C for 72 hours.
Soil sample was aseptically collected according to standard
microbiological sampling protocol [6] from Thal desert,
Bacterial Survival Curve under UV Radiation
Pakistan and transported to the laboratory immediately to
and Oxidative Stress
prevent any contamination. The serially diluted soil sample
in normal saline was inoculated on TGY (tryptone, glucose,
The survivability of the UV-resistant strain TMC-6 was
yeast extract) agar plates through spread plate method. Inoc-
checked against UV-B radiations, H 2O2, and mitomycin C
ulated plates were exposed to 280 nm of UV-B radiations
in comparison with E. coli strain ATCC (10536) and sur-
for 2 min in a UV chamber and incubated for 3–5 days. The
vival curves were plotted [12]. Overnight grown culture of
isolates obtained were subcultured and irradiated with dif-
TMC-6 was diluted in normal saline until an OD600 of 0.08
ferent UV-B doses for time durations (2–10 min). The UV
is obtained. 20 μl of cell suspension was inoculated on TGY
dose effect on test culture plates was determined by time of
agar plates by spread plate technique. Plates were exposed to
exposure to the UV fluence rate. The UV fluence rate is the
UV-B dosage from 2 to 12 min at 280 nm and incubated at
radiation energy reaching a surface area in a specific time
37 °C in dark. Besides this, the cell suspension was treated
(energy/area/time) in J/m2 and is determined by the follow-
against different molar concentration of H2O2 (10–60 mM)
ing formula:
and mitomycin C (2–10 μg/ml) for 60 and 20 min at 37 °C,
He = Ee × t respectively. 20 μl from each treated cell suspension was
placed on TGY agar plates and incubated at 37 °C for 72 h
where He is the radiant exposure that reaches a surface
in dark. Survival rate was determined by counting number
area with energy Ee for a specific time period t.
of colonies on treated and untreated culture plates. The
Among the survived UV-resistant strains, strain TMC-6
experiment was run in triplicate and the survival curves were
was selected on the basis of its high survival rate upon
obtained from the average of triplicated data.
UV exposure at 280 nm for a radiation dose of 6780 J/m2
(10 min) and higher pigment production.
Extraction and Purification of Bioactive Compound
Identification of UV‑Resistant Bacterial Strain Strain TMC-6 was grown in 1000 ml of TGY broth at
30 °C in shaking incubator at 150 rpm. Cells were col-
The identification of strain TMC-6 was done morpho- lected after 72 h of incubation through centrifugation and
logically as well as biochemically according to previously placed at − 4 °C to provide cold shock. The cellular sus-
describe methods [7]. For molecular characterization 16S pension in methanol was sonicated for 10–15 mins using
rRNA gene sequencing was used. For this purpose, DNA probe sonicator and centrifuged at 11,200×g for 10 min at
13
Antioxidative and Radioprotective Properties of Glycosylated Flavonoid, Xanthorhamnin…
4 °C to obtain a clear supernatant. The metabolic extract In vitro Bioassays of Purified Cellular Extract
was collected after freeze drying. The dried sample was
then purified by using HC-C18 SPE (solid phase extrac- Radical Scavenging Activity by DPPH Assay
tion) cartridge column with an average flow rate of 1 ml/
min. This technique was performed according to previ- The DPPH (2,2-diphenyl-1-picrylhydrazyl) scavenging
ously describe method [13] by loading 280 mg of the effect of the cellular extract was determined by the method
extract in C18 cartridge and for sample elution different as previously described [16]. The cellular extract in different
solvents with an order of polar to non-polar (methanol, concentration (10–50 µg/µl) was treated with DPPH solution
ethyl acetate and dichloromethane) were passed and col- (0.1 mM) in 96 well microtiter plate with a final volume
lected in separate fractions. The collected purified frac- 200 μl and incubated at 30 °C in dark for 30 min. Absorb-
tion with pigmentation was then selected for further ance was measured at 517 nm with UV–Vis spectrometry.
processing. Ascorbic acid (10–50 µg/µl) was run as positive control
while using DPPH as blank.
13
A. A. Chaudhri et al.
Lipid Peroxidation Inhibition Assay mixture was incubated under light at room temperature.
Cytotoxic effect of the samples was analyzed by counting
The activity of purified extract against lipid peroxidation was the number of viable larvae for every 24 h up to 3 days.
assayed by estimating the Thiobarbituric Acid Reactive Sub-
stances (TBARS) as described previously [19], where mice
liver homogenate was used as lipid source. 1 g of mice liver Results
tissue obtained from the Department of Animal Sciences
was homogenized in tris HCL buffer (pH 7.4). 0.1 ml of the Identification of Strain TMC‑6
homogenate was mixed with cellular extract in different con-
centrations (10–50 μg/μl), 0.3 ml of FeSO4 (10 M), 0.2 ml of The strain TMC-6 is a non-motile, rod shaped, Gram-pos-
SDS (8.1%), 0.5 ml of acetic acid (pH 3.4) and TBA aqueous itive spore forming bacterium with yellowish-orange col-
solution (0.8% v/v). The reaction mixture was incubated at oration on TGY agar. The strain showed tolerance to NaCl
95 °C for 60 min and absorbance was measured at 532 nm up to 8% and is positive for catalase, oxidase, and amylase.
using ascorbic acid as positive control [20]. 16S rRNA gene sequence analysis revealed that the strain
TMC-6 showed maximum alignment with Bacillus sp. The
DNA Damage Prevention Assay nucleotide sequence of the strain was submitted to NCBI
GenBank with accession number MN721293. The phylo-
The DNA damage preventive activity of the extract was genetic tree was constructed following Neighbor-Joining
determined by the method as previously described with approach, which showed 99.9% homology of strain TMC-6
minor modification [21]. 2 μl of plasmid DNA pUC18, Fen- (MN721293) with Bacillus indicus CJY07T (MN177175)
ton’s reagent 7 μl, 1 M sodium nitroprusside 4 µl and cellular (Fig. 1).
extract (50 µg/µl) with distilled water for final volume 20 µl Strain TMC-6 when treated with different metal concen-
were mixed and incubated for 30 min at 37 °C. The untreated trations showed sensitivity to Mercury (Hg2+) even at least
plasmid DNA was used as positive control. Negative control concentration used (150 ppm). The strain was observed to
was run in parallel where the pUC18 was treated only with be resistant to cobalt (Co2+), zinc (Zn2+), nickel (Ni2+), man-
damaging or oxidative substances. The reaction mixtures ganese (Mn2+) and ferrous ( Fe2+) ions at concentration of
were loaded on 0.8% agarose gel and electrophoresis was 500 ppm, which can be related to UV-B radiation resistance.
carried for 1 h prior to staining with ethidium bromide to An increase in pigmentation was observed in M n2+ and C o2+
examine the pattern of bands. supplemented plates.
13
Antioxidative and Radioprotective Properties of Glycosylated Flavonoid, Xanthorhamnin…
5.4 × 103 J/m2 of UV-B radiations. Survival rate against Characterization of Purified Metabolic Extract
H 2O 2 decreased with increase in H 2O 2 concentration,
about 58% survivability was observed at 30 mM concen- TLC Analysis
tration of H
2O2 for 60 mins and 51% survivability at 6 μg/
ml of mitomycin C for 20 mins was observed. However, A yellow pigmented compound was obtained upon purifica-
E. coli ATCC strain represented negligible survivability tion of cellular extract by solid phase extraction (SPE) C18
at these doses and concentrations (Fig. 2). cartridge. TLC analysis showed two spots with antioxidant
property against DPPH spray with Rf values 0.25 and 0.56,
respectively.
The UV/Vis spectrum of the extracted compound when
dissolved in methanol showed predominant peaks at 350 nm,
440 nm and 450 nm.
FT‑IR Spectroscopy
LC–MS Analysis
13
A. A. Chaudhri et al.
Fig. 4 LC–MS chromatogram/negative electrospray ionization mass spectrometry (ESI–MS) spectrum of Xanthorhamnin exhibiting high signal
at m/z 769 [M+H]−
13
Antioxidative and Radioprotective Properties of Glycosylated Flavonoid, Xanthorhamnin…
Fig. 6 Concentration dependent Iron (Ferrous ion) chelation by Fig. 8 Percentage survivability of brine shrimp larvae against xan-
xanthorhamnin using EDTA as positive control. The bars show thorhamnin and positive control (mitomycin C) after 72 h of incuba-
mean ± SD tion. The bars show mean ± SD
13
A. A. Chaudhri et al.
presence might be two interesting mechanisms of the strain Compliance with ethical standards
TMC-6 for the survival under high UV radiations and salt
concentrations, as Mn2+ are reported to prevent the cells Conflicts of interest All the authors declare no conflicts of interest as-
from oxidative damage by blocking the Fenton reactions sociated with the contents of this article.
and by quenching super oxides. The antioxidant and pro-
tein, lipid peroxidation prevention assay of the extracted
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