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Antioxidative and Radioprotective Properties of Glycosylated Flavonoid,


Xanthorhamnin from Radio-Resistant Bacterium Bacillus indicus Strain TMC-
6

Article in Current Microbiology · July 2020


DOI: 10.1007/s00284-020-01930-7

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Current Microbiology
https://doi.org/10.1007/s00284-020-01930-7

Antioxidative and Radioprotective Properties of Glycosylated


Flavonoid, Xanthorhamnin from Radio‑Resistant Bacterium Bacillus
indicus Strain TMC‑6
Ayesha Ahmed Chaudhri1 · Mahnoor Nadeem1 · Asim ur Rahman1 · Tayyaba Alam1 · Wasim Sajjad2 · Fariha Hasan1 ·
Malik Badshah1 · Samiullah Khan1 · Fazal Rehman3 · Aamer Ali Shah1

Received: 25 October 2019 / Accepted: 20 February 2020


© Springer Science+Business Media, LLC, part of Springer Nature 2020

Abstract
A radio-resistant bacterium labeled as strain TMC-6 was isolated from Thal desert, Pakistan and identified through 16S
rRNA gene sequencing as Bacillus indicus strain TMC-6 (MN721293). The isolate was found to be resistant to UV radiation
dose of 6.780 × 103 J/m2 and showed 50% survivability to mitomycin C (6 μg/ml) and ­H2O2 (30 mM). The bacterium showed
yellowish orange coloration when grown on tryptone yeast glucose (TGY) medium. The cellular metabolite was extracted in
methanol and purified through solid phase extraction with C18 column cartridge. The compound was characterized through
UV/Visible spectrophotometry, Fourier Transform Infra-Red (FT-IR) spectroscopy and Liquid Chromatography Mass Spec-
trometry (LC–MS). The LC–MS analysis of the compound revealed a molar mass of 769 [m/z]− that matched the chemical
formula ­C34H42O20 and identified as a glycosylated flavonoid xanthorhamnin. The compound showed significant antioxidant
(77.05%) and metal chelation (79.80%) activities. Xanthorhamnin showed promising oxidative damage inhibitory actions
in bovine serum albumin (65.32%) and mice liver lipids (71.61%) and prevented DNA strand breaks from oxidative stress.
Cytotoxicity in brine shrimp larvae was observed when compared with mitomycin C indicating its effect toward cancerous
cells. These findings concluded that xanthorhamnin from radio-resistant Bacillus indicus strain TMC-6 has high antioxidant,
radioprotective, and antitumor properties against UV-mediated oxidative damages.

Introduction cause damaging effects to all domains of life, in human body


severe mutational effects occur due to prolonged exposure of
Microorganisms in their natural habitats encounter numerous high level radiations resulting in malignancies and cataracts
stressful conditions and to ensure their persistent survival, [2]. It is well known that radio-resistant extremophiles have
they react to such challenging environments accordingly. adapted different mechanisms to survive under high radia-
Microorganisms thriving in extreme arid environments have tion levels by effectively inactivating the reactive oxygen
special protection mechanisms against desiccation stress and species (ROS). The protection against ROS-mediated dam-
high levels of radiations emitting from sun. In deserts, low ages is accomplished by development of different antioxi-
water availability and prolonged exposure of UV radiations dant systems within the cell such as antioxidant enzymes:
act as natural mutagens that can harm microbial life by catalase, peroxidases [3], Mn/Fe-mediated regulatory
damaging cellular vital molecules [1]. Ultraviolet radiations response, production of antioxidant compounds as second-
ary metabolites (extremolytes), release of extracellular poly-
meric substances for UV absorbance.
* Aamer Ali Shah The natural occurring antioxidant compounds such as
alishah@qau.edu.pk flavonoids, carotenoids, mycosporin-like amino acids are
1
Department of Microbiology, Faculty of Biological Sciences, responsible for prevention of the oxidation of cellular com-
Quaid-I-Azam University, Islamabad 45320, Pakistan ponents by scavenging free radicals and diminishing oxida-
2
Department of Biological Sciences, National University tive stress, thus providing protection to cellular proteomes
of Medical Sciences, Rawalpindi 46000, Pakistan and genome. Such extremolytes can be used effectively
3
Department of Biotechnology, University of Balochistan, against various oxidation induced diseases like premature
Quetta, Pakistan aging, cataracts, tumor formation, and modification of

13
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A. A. Chaudhri et al.

cellular lipids and proteins [4, 5]. The increase demand of was extracted by phenol-chloroform method [8]. The PCR
antioxidant compounds in pharmaceutics and therapeutics amplification of 16S rRNA was done by using two univer-
has impelled the scientific interest in these extremolytes sal primers F27: AGA​GTT​TGATCMTGG​CTC​AG, R1492:
from UV-resistant microorganisms due to easy and high TAC​GGY​TAC​CTT​GTT​ACG​ACTT [9, 10]. The amplicons
productivity of the bioactive compounds from bacteria. So obtained were then sequenced at Macrogen Service Center
far, many UV-resistant microbes have been exploited for (Geunchun-gu, Seoul, South Korea); the sequence was com-
the isolation and characterization of radio protective com- puted for nearest possible genus by using BLAST tool at the
pounds. The present study was focused on the radio protec- National Center for Biotechnology Information NCBI data-
tive and antioxidative properties of bioactive compounds base and homologs found were assessed for their phylogeny
extracted from a radio-resistant bacterium Bacillus indicus through Molecular Evolutionary Genetic Analysis (MEGA
strain TMC-6 (MN721293) isolated from desert soil. The X) [11]. Based upon distance matrix, a neighbor-joining tree
resistance of the isolate against UV exposure, ­H2O2 and was constructed.
mitomycin was analyzed. The colored compound extracted
from Bacillus indicus strain TMC6 (MN721293) was puri- Resistance of Strain TMC‑6 to Heavy Metal
fied and evaluated for its radioprotective and antioxidant
activities in vitro. Stock solutions of transition metals mercury (­ Hg2+), cobalt
­(Co2+), nickel ­(Ni2+), zinc ­(Zn2+), ferrous ­(Fe2+), and man-
ganese ­(Mn2+) were prepared in sterilized distilled water
from their respective metal salts (chlorides). Effect of metal
Materials and Methods
ions on the growth of strain TMC-6 was determined by sup-
plementing the TGY agar medium with different metals at
Isolation of UV‑Resistant Bacteria
concentrations of 150 ppm, 250 ppm and 500 ppm, respec-
tively, and incubated at 30 °C for 72 hours.
Soil sample was aseptically collected according to standard
microbiological sampling protocol [6] from Thal desert,
Bacterial Survival Curve under UV Radiation
Pakistan and transported to the laboratory immediately to
and Oxidative Stress
prevent any contamination. The serially diluted soil sample
in normal saline was inoculated on TGY (tryptone, glucose,
The survivability of the UV-resistant strain TMC-6 was
yeast extract) agar plates through spread plate method. Inoc-
checked against UV-B radiations, H ­ 2O2, and mitomycin C
ulated plates were exposed to 280 nm of UV-B radiations
in comparison with E. coli strain ATCC (10536) and sur-
for 2 min in a UV chamber and incubated for 3–5 days. The
vival curves were plotted [12]. Overnight grown culture of
isolates obtained were subcultured and irradiated with dif-
TMC-6 was diluted in normal saline until an ­OD600 of 0.08
ferent UV-B doses for time durations (2–10 min). The UV
is obtained. 20 μl of cell suspension was inoculated on TGY
dose effect on test culture plates was determined by time of
agar plates by spread plate technique. Plates were exposed to
exposure to the UV fluence rate. The UV fluence rate is the
UV-B dosage from 2 to 12 min at 280 nm and incubated at
radiation energy reaching a surface area in a specific time
37 °C in dark. Besides this, the cell suspension was treated
(energy/area/time) in J/m2 and is determined by the follow-
against different molar concentration of ­H2O2 (10–60 mM)
ing formula:
and mitomycin C (2–10 μg/ml) for 60 and 20 min at 37 °C,
He = Ee × t respectively. 20 μl from each treated cell suspension was
placed on TGY agar plates and incubated at 37 °C for 72 h
where He is the radiant exposure that reaches a surface
in dark. Survival rate was determined by counting number
area with energy Ee for a specific time period t.
of colonies on treated and untreated culture plates. The
Among the survived UV-resistant strains, strain TMC-6
experiment was run in triplicate and the survival curves were
was selected on the basis of its high survival rate upon
obtained from the average of triplicated data.
UV exposure at 280 nm for a radiation dose of 6780 J/m2
(10 min) and higher pigment production.
Extraction and Purification of Bioactive Compound

Identification of UV‑Resistant Bacterial Strain Strain TMC-6 was grown in 1000 ml of TGY broth at
30 °C in shaking incubator at 150 rpm. Cells were col-
The identification of strain TMC-6 was done morpho- lected after 72 h of incubation through centrifugation and
logically as well as biochemically according to previously placed at − 4 °C to provide cold shock. The cellular sus-
describe methods [7]. For molecular characterization 16S pension in methanol was sonicated for 10–15 mins using
rRNA gene sequencing was used. For this purpose, DNA probe sonicator and centrifuged at 11,200×g for 10 min at

13
Antioxidative and Radioprotective Properties of Glycosylated Flavonoid, Xanthorhamnin…

4 °C to obtain a clear supernatant. The metabolic extract In vitro Bioassays of Purified Cellular Extract
was collected after freeze drying. The dried sample was
then purified by using HC-C18 SPE (solid phase extrac- Radical Scavenging Activity by DPPH Assay
tion) cartridge column with an average flow rate of 1 ml/
min. This technique was performed according to previ- The DPPH (2,2-diphenyl-1-picrylhydrazyl) scavenging
ously describe method [13] by loading 280 mg of the effect of the cellular extract was determined by the method
extract in C18 cartridge and for sample elution different as previously described [16]. The cellular extract in different
solvents with an order of polar to non-polar (methanol, concentration (10–50 µg/µl) was treated with DPPH solution
ethyl acetate and dichloromethane) were passed and col- (0.1 mM) in 96 well microtiter plate with a final volume
lected in separate fractions. The collected purified frac- 200 μl and incubated at 30 °C in dark for 30 min. Absorb-
tion with pigmentation was then selected for further ance was measured at 517 nm with UV–Vis spectrometry.
processing. Ascorbic acid (10–50 µg/µl) was run as positive control
while using DPPH as blank.

Separation and Characterization of Cellular Extract Abs of control − Abs of sample


%Scavenging = × 100
Abs of control
The separation of bioactive components from strain TMC-6
was carried out through thin layer chromatography (TLC).
Chloroform: methanol [7:3 v/v] solvent system was used as Iron Chelation Assay
mobile phase. The spots of cellular extract were made on the
baseline of the TLC plate and the solvent front was let to run The chelation of ferrous ions by the metabolic extract was
for about 80% of the plate. The running lane was then dried determined by Dinis [17] method with slight modifications.
thoroughly in air and the developed TLC plate was visual- 50 μl of 2 mM Ferrous chloride was mixed with different
ized under UV illuminator. The bioactive components were concentrations of purified extract (10–30 μg/μl) in a 96 well
identified by spraying DPPH [14]. microtiter plate and the reaction was initiated by adding
The absorption peaks of the unknown bioactive com- 200 μl of 5 mM ferrozine prior to incubation for 15 min.
pounds in the cellular extract were analyzed through The absorbance was measured at 562 nm by UV–Vis spec-
UV–visible light (UV–Vis) spectrophotometer within a trometer. EDTA (10–30 µg/µl) was used as positive control.
range of 200–800 nm to obtain absorption spectra. Chelation activity of bioactive extract was calculated by
formula:

FT‑IR analysis of Cellular Extract Abs of control − Abs of sample


% Chelation = × 100
Abs of control
The cellular extract was subjected to Fourier Transform
Infra-Red (FT-IR) spectroscopy analysis. The sample was
mixed with KBr and the spectrum was obtained in the spec-
Protein Oxidation Prevention Assay
tral region between 400 and 4000 cm−1 of the FT-IR spec-
trometer (Perkin Elmer Spectrum 65). The IR transmittance
The inhibitory effect of the bioactive extract against protein
of the pure compound was plotted as intensity versus wave
oxidation was measured by using DNPH (2,4-dinitrophenyl
number.
hydrazine) [18]. Bovine serum albumin was used as standard
protein. 100 μl of BSA (1 mg/ml) was treated with 100 μl
of ­FeSO4 (1 mM), ­H2O2 (80 mM) and different concentra-
LC–MS Analysis of Cellular Extract
tions of bioactive extract (10–50 μg/μl) and incubated at
37 °C for 1 h. 15U of catalase was added to stop the reaction
Liquid chromatography mass spectrometry (LC/MS) analy-
and 600 µl of DNPH (10 mM) was added before incubation
sis for the bioactive metabolite was performed with an Agi-
for 1 h. 10% TCA was added for precipitation of unbound
lent 6310 Ion Trap LC/MS system as previously described
proteins. The precipitates were washed with ethyl acetate:
[15]. 5 μl of the filtered sample was injected onto a C18 col-
ethanol (50:50) and re-dissolved in 1 ml of guanidine hydro-
umn using solvents acetonitrile and water, as mobile phase
chloride (6 M). The mixture was centrifuged at 10,000 rpm
with a flow rate of 0.5 ml/min in isocratic mode. The mass
for 5 min and absorbance of supernatant was determined at
spectrum was acquired using electrospray ionization mass
370 nm. Ascorbic acid (10–50 μg/μl) was used as positive
spectrometry in negative ion mode to detect m/z transitions
control.
[M+H]−.

13
A. A. Chaudhri et al.

Lipid Peroxidation Inhibition Assay mixture was incubated under light at room temperature.
Cytotoxic effect of the samples was analyzed by counting
The activity of purified extract against lipid peroxidation was the number of viable larvae for every 24 h up to 3 days.
assayed by estimating the Thiobarbituric Acid Reactive Sub-
stances (TBARS) as described previously [19], where mice
liver homogenate was used as lipid source. 1 g of mice liver Results
tissue obtained from the Department of Animal Sciences
was homogenized in tris HCL buffer (pH 7.4). 0.1 ml of the Identification of Strain TMC‑6
homogenate was mixed with cellular extract in different con-
centrations (10–50 μg/μl), 0.3 ml of ­FeSO4 (10 M), 0.2 ml of The strain TMC-6 is a non-motile, rod shaped, Gram-pos-
SDS (8.1%), 0.5 ml of acetic acid (pH 3.4) and TBA aqueous itive spore forming bacterium with yellowish-orange col-
solution (0.8% v/v). The reaction mixture was incubated at oration on TGY agar. The strain showed tolerance to NaCl
95 °C for 60 min and absorbance was measured at 532 nm up to 8% and is positive for catalase, oxidase, and amylase.
using ascorbic acid as positive control [20]. 16S rRNA gene sequence analysis revealed that the strain
TMC-6 showed maximum alignment with Bacillus sp. The
DNA Damage Prevention Assay nucleotide sequence of the strain was submitted to NCBI
GenBank with accession number MN721293. The phylo-
The DNA damage preventive activity of the extract was genetic tree was constructed following Neighbor-Joining
determined by the method as previously described with approach, which showed 99.9% homology of strain TMC-6
minor modification [21]. 2 μl of plasmid DNA pUC18, Fen- (MN721293) with Bacillus indicus ­CJY07T (MN177175)
ton’s reagent 7 μl, 1 M sodium nitroprusside 4 µl and cellular (Fig. 1).
extract (50 µg/µl) with distilled water for final volume 20 µl Strain TMC-6 when treated with different metal concen-
were mixed and incubated for 30 min at 37 °C. The untreated trations showed sensitivity to Mercury ­(Hg2+) even at least
plasmid DNA was used as positive control. Negative control concentration used (150 ppm). The strain was observed to
was run in parallel where the pUC18 was treated only with be resistant to cobalt ­(Co2+), zinc ­(Zn2+), nickel ­(Ni2+), man-
damaging or oxidative substances. The reaction mixtures ganese ­(Mn2+) and ferrous (­ Fe2+) ions at concentration of
were loaded on 0.8% agarose gel and electrophoresis was 500 ppm, which can be related to UV-B radiation resistance.
carried for 1 h prior to staining with ethidium bromide to An increase in pigmentation was observed in M ­ n2+ and C ­ o2+
examine the pattern of bands. supplemented plates.

Cytotoxic Assay Bacterial Survival Against UV‑B, Oxidative Stress


and Mitomycin C
Cytotoxic effect of flavonoid extract was analyzed by com-
paring it with mitomycin C, through brine shrimp lethality Survival rate of strain TMC-6 was observed in comparison
assay [22, 23]. In separated glass tubes 10 hatched brine to E. coli strain (ATCC 10536) against different doses of
shrimp larvae were added to 5 ml artificial seawater. Test UV-B, ­H2O2 and mitomycin C concentrations. The sur-
compounds ranges from 5 to 20 μg/μl were added and the vivability of strain TMC-6 was 54% at the energy dose of

Fig. 1  Phylogenetic analysis


of UV-resistant bacterial strain
TMC-6 by Neighbor-Joining
method with an evolutionary
analysis conducted in MEGAX.
Sequence variation of nucleo-
tides bar 0.010

13
Antioxidative and Radioprotective Properties of Glycosylated Flavonoid, Xanthorhamnin…

5.4 × 103 J/m2 of UV-B radiations. Survival rate against Characterization of Purified Metabolic Extract
­H 2O 2 decreased with increase in H ­ 2O 2 concentration,
about 58% survivability was observed at 30 mM concen- TLC Analysis
tration of H
­ 2O2 for 60 mins and 51% survivability at 6 μg/
ml of mitomycin C for 20 mins was observed. However, A yellow pigmented compound was obtained upon purifica-
E. coli ATCC strain represented negligible survivability tion of cellular extract by solid phase extraction (SPE) C18
at these doses and concentrations (Fig. 2). cartridge. TLC analysis showed two spots with antioxidant
property against DPPH spray with Rf values 0.25 and 0.56,
respectively.
The UV/Vis spectrum of the extracted compound when
dissolved in methanol showed predominant peaks at 350 nm,
440 nm and 450 nm.

FT‑IR Spectroscopy

FT-IR analysis showed peaks at 3344 cm−1 that corresponds


to stretching of hydroxyl (-OH) groups. While peak at
1564 cm−1 represents C=C– groups of aromatic ring bend-
ing. A peak at 1462 cm−1 exhibits –CH3,–CH2–,CH– bonds
that can be related to alkanes, flavonoids, and aromatic rings
with –CH– bending. Peaks at 1392 cm−1 and 1087 cm−1
predict the vibrations of –C=O– of carbonyl groups and
–C–O–C– of ethers, respectively, that could be present in
flavonoids, polyphenols and others (Fig. 3).

LC–MS Analysis

The extracted bioactive metabolite was subject to LC–MS


for mass identification through electrospray ionization mass
spectrometry (ESI–MS). The purified extract gave signals
in negative mode at m/z 769 [M+H]− (Fig. 4), indicating
our extract as a glycosylated flavonoid particularly flavo-
noid 3-O- glycosides [24]. As per web data bases, Mass-
Bank [25]; ResPect [26]; HMBD [27] and PubChem [28],
the compound was identified as Xanthorhamnin (7-Methyl
quercetin-3-Galactoside-6″-Rhamnoside-3‴-Rhamnoside)
with chemical formula ­C34H40O20.

In vitro Bioassays of Extracted Flavonoid

Radical Scavenging Activity by DPPH Assay

The concentration dependent DPPH radical scavenging


activity of xanthorhamnin was detected by disappearance
of violet color of DPPH. Maximum scavenging activity
(77%) of xanthorhamnin was observed at 50 μg/μl. While
the standard ascorbic acid showed a maximum activity of
81% at 50 μg/μl (Fig. 5).

Iron Chelation Assay


Fig. 2  % Survivability of Bacillus indicus strain TMC-6 under expo-
sure of (a) UV-B radiations (b) ­H2O2 and (c) mitomycin C in correla- Iron (Ferrous ion) chelation activity of purified xanthor-
tion to E. coli ATCC strain (10536) hamnin was observed by disappearance of dark color of

13
A. A. Chaudhri et al.

Fig. 3  FT-IR spectrum of xanthorhamnin from Bacillus indicus strain TMC-6

Fig. 4  LC–MS chromatogram/negative electrospray ionization mass spectrometry (ESI–MS) spectrum of Xanthorhamnin exhibiting high signal
at m/z 769 [M+H]−

ferrozine. A significant percentage of ferrous ion chela-


tion (79%) by the extracted flavonoid xanthorhamnin
was observed at concentration 50 μg/μl when compared
to standard EDTA (10–30 µg/µl) showing 89% chelation
(Fig. 6).

Protein and Lipid Oxidation Inhibition Assay

The protein and lipid oxidation inhibition assays were per-


formed to evaluate oxidation prevention activity of xan-
thorhamnin. The maximum inhibition of oxidative dam-
age to protein and lipid was observed as 65% and 72%,
respectively, at 50 μg/μl of xanthorhamnin in comparison
Fig. 5  Concentration dependent DPPH scavenging activity of xan- to ascorbic acid showing 80% and 70% inhibition, respec-
thorhamnin with ascorbic acid as positive control. The bars show tively (Fig. 7).
mean ± SD

13
Antioxidative and Radioprotective Properties of Glycosylated Flavonoid, Xanthorhamnin…

Fig. 6  Concentration dependent Iron (Ferrous ion) chelation by Fig. 8  Percentage survivability of brine shrimp larvae against xan-
xanthorhamnin using EDTA as positive control. The bars show thorhamnin and positive control (mitomycin C) after 72 h of incuba-
mean ± SD tion. The bars show mean ± SD

Fig. 9  DNA damage preven-


tive assay. Lane P.C is positive
control containing pUC18. Lane
N.C is negative control without
antioxidant. Lane FLV contains
pUC18 treated with xanthor-
hamnin

untreated DNA was loaded. While lane A indicates DNA


damage prevention by the flavonoid xanthorhamnin (Fig. 9).

Fig. 7  Concentration dependent protein carbonylation and lipid per-


oxidation inhibition activity of xanthorhamnin using bovine serum
albumin and mice lipids as test samples using ascorbic acid (50 µg/µl)
Discussion
as positive control. The bars show mean ± SD
The objective of this study was to assess the bioactive
compounds (xanthorhamnin) from UV-resistant Bacillus
Cytotoxic Assay indicus TMC-6 isolated from the desert soil of Pakistan
that may facilitates the survivability of the organism.
Cytotoxic effect of xanthorhamnin was determined by per- Bacillus indicus TMC-6 was found to produce xanthor-
forming brine shrimp cytotoxic assay and compared it with hamnin, a yellow pigmented glycosylated flavonoid with
an anticancer agent Mitomycin C. The cytotoxicity of xan- 3-O glycosylation of quercetin which is methylated at 7
thorhamnin was concentration dependent, at 20 μg/μl maxi- position of the benzene ring. Through FT-IR analysis, the
mum cytotoxicity (70%) was observed as compared to stand- obtained peaks confirmed the benzene rings bending along
ard which showed (100%) cytotoxicity at 20 μg/μl (Fig. 8). with the methyl groups and hydroxyl groups. Furthermore,
by elemental analysis through ESI–MS the compound pro-
DNA Damage Prevention Assay duced signals of a molecular ion at m/z 769. The isolate
showed high resistance to UV radiations and other oxida-
The prevention of DNA damage through extracted xanthor- tive stresses (mitomycin C and ­H 2O 2), probably due to
hamnin was detected by treating a plasmid pUC18 with the high production of ROS quenching enzymes catalase
oxidative agents. The DNA strands were broken down by and peroxidases [29]. The production of flavonoid also
the hydroxyl radical (⋅OH) generated through Fenton reac- provides antioxidant properties to the isolate against such
tion, as observed in lane NC (negative control). In lane PC, stresses [30]. Manganese accumulation and antioxidants

13
A. A. Chaudhri et al.

presence might be two interesting mechanisms of the strain Compliance with ethical standards
TMC-6 for the survival under high UV radiations and salt
concentrations, as ­Mn2+ are reported to prevent the cells Conflicts of interest All the authors declare no conflicts of interest as-
from oxidative damage by blocking the Fenton reactions sociated with the contents of this article.
and by quenching super oxides. The antioxidant and pro-
tein, lipid peroxidation prevention assay of the extracted
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